Wall clock time and date at job start Mon Mar 30 2020 02:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35572 * 116.99956 * 2 1 4 4 C 1.38816 * 120.05762 * 269.98103 * 3 2 1 5 5 F 1.35097 * 119.84446 * 359.97438 * 4 3 2 6 6 C 1.38038 * 120.30722 * 180.02562 * 4 3 2 7 7 C 1.40234 * 120.42187 * 359.97438 * 6 4 3 8 8 C 1.43205 * 119.94476 * 179.97438 * 7 6 4 9 9 N 6.71459 * 117.01451 * 359.67552 * 2 1 3 10 10 C 1.39000 * 120.10994 * 359.72831 * 7 6 4 11 11 C 1.40454 * 119.68841 * 0.54489 * 10 7 6 12 12 C 1.41229 * 120.20531 * 179.72457 * 11 10 7 13 13 H 1.07995 * 120.00034 * 205.23013 * 12 11 10 14 14 C 1.39905 * 119.99593 * 25.23346 * 12 11 10 15 15 N 1.30864 * 120.00628 * 26.57219 * 14 12 11 16 16 Si 1.86803 * 119.99569 * 206.57138 * 14 12 11 17 17 H 1.48503 * 109.47117 * 179.97438 * 16 14 12 18 18 H 1.48499 * 109.47314 * 299.99993 * 16 14 12 19 19 H 1.48505 * 109.47168 * 59.99936 * 16 14 12 20 20 H 1.09000 * 109.47151 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47291 * 300.00551 * 1 2 3 22 22 H 1.09000 * 109.47162 * 60.00276 * 1 2 3 23 23 H 1.08003 * 119.78346 * 179.97438 * 6 4 3 24 24 H 1.07999 * 120.15633 * 180.27573 * 10 7 6 25 25 H 0.97003 * 120.00110 * 5.88717 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2080 0.0000 4 6 2.3605 1.8273 -1.2015 5 9 2.0537 1.2232 -2.3703 6 6 2.9876 3.0570 -1.2075 7 6 3.3120 3.6945 -0.0013 8 6 3.9631 4.9699 -0.0195 9 7 4.4789 5.9819 -0.0339 10 6 2.9981 3.0930 1.2118 11 6 2.3652 1.8392 1.2234 12 6 2.0465 1.2154 2.4497 13 1 1.9506 0.1409 2.5001 14 6 1.8550 1.9896 3.5992 15 7 1.4558 3.2313 3.4929 16 14 2.1693 1.2506 5.2858 17 1 1.8959 2.2693 6.3313 18 1 1.2766 0.0812 5.4881 19 1 3.5857 0.8142 5.3790 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 3.2300 3.5310 -2.1472 24 1 3.2436 3.5854 2.1411 25 1 1.2107 3.5894 2.6254 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575649226.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:53 Heat of formation + Delta-G solvation = -61.812589 kcal Electronic energy + Delta-G solvation = -14332.514905 eV Core-core repulsion = 11610.906340 eV Total energy + Delta-G solvation = -2721.608566 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.74537 -40.44128 -38.52996 -37.25747 -35.82704 -31.69178 -30.96636 -28.05761 -27.10551 -24.10171 -23.32941 -20.83486 -18.88321 -18.44097 -17.75966 -16.98409 -16.80670 -15.81613 -15.77203 -15.33997 -15.26403 -14.86916 -14.67196 -14.49075 -14.24355 -13.36958 -13.25897 -13.05604 -12.60534 -12.44777 -12.23236 -11.95446 -11.67143 -11.06504 -10.62108 -9.81626 -9.56129 -9.26797 -6.63334 -0.14976 0.53031 1.49826 1.55632 1.57239 1.84214 1.90401 2.29802 2.57395 2.82198 2.97354 3.36304 3.59701 4.25495 4.34337 4.52135 4.62562 4.64596 4.80066 5.01454 5.03829 5.37775 5.43727 5.60657 5.87017 5.88783 6.27429 6.37284 6.63216 6.91899 7.88059 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.021087 B = 0.013028 C = 0.008492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.519368 B = 2148.710448 C = 3296.292725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.335 6.335 3 C -0.058 4.058 4 C 0.117 3.883 5 F -0.146 7.146 6 C -0.229 4.229 7 C 0.023 3.977 8 C 0.288 3.712 9 N -0.460 5.460 10 C -0.167 4.167 11 C 0.073 3.927 12 C -0.498 4.498 13 H 0.088 0.912 14 C 0.010 3.990 15 N -0.791 5.791 16 Si 1.112 2.888 17 H -0.272 1.272 18 H -0.255 1.255 19 H -0.262 1.262 20 H 0.111 0.889 21 H 0.035 0.965 22 H 0.038 0.962 23 H 0.143 0.857 24 H 0.115 0.885 25 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.968 -4.370 -0.917 4.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.252 6.252 3 C -0.105 4.105 4 C 0.097 3.903 5 F -0.125 7.125 6 C -0.251 4.251 7 C 0.019 3.981 8 C -0.026 4.026 9 N -0.136 5.136 10 C -0.189 4.189 11 C 0.069 3.931 12 C -0.525 4.525 13 H 0.106 0.894 14 C -0.209 4.209 15 N -0.413 5.413 16 Si 0.928 3.072 17 H -0.197 1.197 18 H -0.179 1.179 19 H -0.186 1.186 20 H 0.129 0.871 21 H 0.053 0.947 22 H 0.057 0.943 23 H 0.161 0.839 24 H 0.133 0.867 25 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.114 -2.575 0.602 2.870 hybrid contribution -0.543 -0.475 -2.066 2.189 sum -1.657 -3.051 -1.465 3.768 Atomic orbital electron populations 1.23024 0.79876 1.03538 0.99723 1.85900 1.20224 1.24946 1.94117 1.18739 1.08706 0.92188 0.90838 1.17634 1.00668 0.92080 0.79899 1.91386 1.91424 1.83281 1.46425 1.20187 1.11546 0.95983 0.97423 1.15465 1.00686 0.87759 0.94156 1.25816 0.92323 0.92541 0.91920 1.81120 1.11154 1.12050 1.09292 1.21155 1.04010 0.98129 0.95639 1.17746 0.91485 0.91097 0.92767 1.20744 1.40826 0.97611 0.93282 0.89405 1.28463 0.90235 0.93408 1.08831 1.70627 1.24346 1.15254 1.31032 0.83047 0.78992 0.76163 0.68969 1.19705 1.17881 1.18625 0.87124 0.94655 0.94324 0.83929 0.86749 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.13 11.13 113.37 1.26 2.40 15 2 O -0.34 -14.48 9.54 -88.79 -0.85 -15.33 15 3 C -0.06 -2.62 5.76 23.17 0.13 -2.49 15 4 C 0.12 4.87 7.28 22.36 0.16 5.04 15 5 F -0.15 -5.83 17.09 44.97 0.77 -5.06 15 6 C -0.23 -8.84 9.71 22.71 0.22 -8.62 15 7 C 0.02 0.94 5.73 -21.36 -0.12 0.81 15 8 C 0.29 11.31 15.31 88.33 1.35 12.66 15 9 N -0.46 -18.54 18.54 19.00 0.35 -18.19 15 10 C -0.17 -7.44 7.67 22.99 0.18 -7.26 15 11 C 0.07 3.41 5.30 -21.24 -0.11 3.30 15 12 C -0.50 -23.24 8.63 23.41 0.20 -23.04 15 13 H 0.09 4.10 7.72 -2.91 -0.02 4.08 15 14 C 0.01 0.46 4.90 85.24 0.42 0.88 15 15 N -0.79 -37.17 12.32 21.82 0.27 -36.90 15 16 Si 1.11 37.62 30.01 68.60 2.06 39.68 15 17 H -0.27 -9.23 7.11 99.48 0.71 -8.52 15 18 H -0.25 -7.90 7.11 99.48 0.71 -7.19 15 19 H -0.26 -8.48 7.11 99.48 0.71 -7.78 15 20 H 0.11 3.05 8.14 -2.39 -0.02 3.03 15 21 H 0.03 1.28 8.14 -2.39 -0.02 1.26 15 22 H 0.04 1.26 8.14 -2.39 -0.02 1.24 15 23 H 0.14 4.75 8.06 -2.91 -0.02 4.73 15 24 H 0.11 5.29 6.51 -2.91 -0.02 5.27 15 25 H 0.29 14.02 6.78 -92.71 -0.63 13.40 15 Total: -1.00 -50.27 243.75 7.66 -42.61 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 1.37 Total: 9.52 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: 3.69 Total: -16.32 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: 0.62 Total: -55.09 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.85 Total: -15.33 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 0.77 Total: -5.06 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 2.06 Total: 39.68 kcal Total: -50.27 7.66 -42.61 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575649226.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.206 kcal (2) G-P(sol) polarization free energy of solvation -50.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds