Wall clock time and date at job start Mon Mar 30 2020 02:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35942 * 116.99969 * 2 1 4 4 C 1.38878 * 119.80337 * 359.97438 * 3 2 1 5 5 C 1.39847 * 120.32977 * 180.02562 * 4 3 2 6 6 C 1.43203 * 120.02880 * 180.02562 * 5 4 3 7 7 N 5.84239 * 80.77039 * 359.97438 * 2 1 3 8 8 C 1.39444 * 119.94299 * 0.28336 * 5 4 3 9 9 F 1.35104 * 120.19553 * 179.71786 * 8 5 4 10 10 C 1.40846 * 119.61356 * 359.42644 * 8 5 4 11 11 C 1.41318 * 120.16486 * 180.29648 * 10 8 5 12 12 H 1.07998 * 119.99944 * 25.01190 * 11 10 8 13 13 C 1.39920 * 119.99557 * 205.01733 * 11 10 8 14 14 N 1.30851 * 120.00353 * 17.82740 * 13 11 10 15 15 Si 1.86809 * 119.99625 * 197.82677 * 13 11 10 16 16 H 1.48501 * 109.46706 * 59.99919 * 15 13 11 17 17 H 1.48494 * 109.47061 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.46992 * 299.99898 * 15 13 11 19 19 C 1.38142 * 119.80350 * 180.02562 * 3 2 1 20 20 H 1.09005 * 109.46958 * 300.00236 * 1 2 3 21 21 H 1.08995 * 109.47360 * 60.00078 * 1 2 3 22 22 H 1.09005 * 109.47450 * 180.02562 * 1 2 3 23 23 H 1.07997 * 119.83842 * 0.04928 * 4 3 2 24 24 H 0.97000 * 119.99494 * 180.02562 * 14 13 11 25 25 H 1.07999 * 119.97851 * 359.97438 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2858 2.3734 -0.0005 5 6 1.9092 3.6252 -0.0011 6 6 1.1188 4.8194 -0.0011 7 7 0.4920 5.7667 -0.0026 8 6 3.3011 3.7096 -0.0071 9 9 3.9086 4.9163 -0.0134 10 6 4.0699 2.5295 -0.0003 11 6 5.4813 2.6015 0.0001 12 1 5.9772 3.4776 0.3911 13 6 6.2361 1.5377 -0.5062 14 7 5.6737 0.6482 -1.2838 15 14 8.0468 1.3875 -0.0720 16 1 8.1940 1.2631 1.4005 17 1 8.6154 0.1840 -0.7303 18 1 8.7703 2.5962 -0.5415 19 6 3.4259 1.2788 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 0.2077 2.3101 -0.0001 24 1 6.1970 -0.0895 -1.6344 25 1 4.0107 0.3708 -0.0005 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575649420.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:35 Heat of formation + Delta-G solvation = -43.558032 kcal Electronic energy + Delta-G solvation = -14162.582009 eV Core-core repulsion = 11441.765020 eV Total energy + Delta-G solvation = -2720.816989 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.55354 -38.99770 -36.71585 -35.70175 -33.75469 -30.37361 -29.14187 -26.67366 -25.53540 -22.82994 -20.89709 -19.01464 -16.62171 -16.20847 -16.04792 -15.89995 -15.08499 -14.91032 -14.36017 -13.65562 -13.25752 -12.90903 -12.67357 -12.51041 -12.18556 -11.88448 -11.75934 -11.42119 -11.31436 -11.01608 -10.77126 -10.40916 -9.96750 -9.91385 -9.36385 -7.93281 -7.22870 -6.98900 -4.70971 1.78803 2.43602 2.96337 2.97944 3.02273 3.26673 3.73703 3.77803 4.06361 4.36300 4.64802 5.17070 5.45168 5.55161 5.60028 5.80698 6.04010 6.31520 6.44481 6.84889 6.94485 6.99800 7.35308 7.45828 7.64471 8.02084 8.09627 8.37698 8.45051 8.48590 9.86823 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.025153 B = 0.010932 C = 0.007801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.915162 B = 2560.656623 C = 3588.451780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.322 6.322 3 C 0.132 3.868 4 C -0.259 4.259 5 C -0.013 4.013 6 C 0.279 3.721 7 N -0.457 5.457 8 C 0.007 3.993 9 F -0.150 7.150 10 C 0.108 3.892 11 C -0.440 4.440 12 H 0.091 0.909 13 C 0.076 3.924 14 N -0.772 5.772 15 Si 0.918 3.082 16 H -0.259 1.259 17 H -0.275 1.275 18 H -0.262 1.262 19 C -0.158 4.158 20 H 0.048 0.952 21 H 0.048 0.952 22 H 0.087 0.913 23 H 0.114 0.886 24 H 0.289 0.711 25 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.912 -4.084 1.475 4.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.236 6.236 3 C 0.087 3.913 4 C -0.282 4.282 5 C -0.018 4.018 6 C -0.035 4.035 7 N -0.134 5.134 8 C -0.016 4.016 9 F -0.129 7.129 10 C 0.104 3.896 11 C -0.468 4.468 12 H 0.109 0.891 13 C -0.146 4.146 14 N -0.396 5.396 15 Si 0.741 3.259 16 H -0.184 1.184 17 H -0.200 1.200 18 H -0.186 1.186 19 C -0.179 4.179 20 H 0.066 0.934 21 H 0.067 0.933 22 H 0.106 0.894 23 H 0.132 0.868 24 H 0.101 0.899 25 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.723 -2.975 1.312 4.240 hybrid contribution 0.784 -0.130 0.027 0.795 sum -1.939 -3.104 1.339 3.897 Atomic orbital electron populations 1.22856 0.80236 1.02454 1.00833 1.86057 1.19869 1.27932 1.89714 1.18621 0.92203 0.82565 0.97877 1.20175 0.98071 0.89861 1.20071 1.15431 0.89428 0.87307 1.09611 1.25927 0.92493 0.92663 0.92383 1.81071 1.10382 1.10881 1.11072 1.17777 0.87852 0.80889 1.15126 1.91328 1.83776 1.43048 1.94754 1.17186 0.93554 0.88366 0.90486 1.19554 0.90293 1.02923 1.33996 0.89081 1.25992 1.02061 0.94201 0.92323 1.69791 1.39327 1.10384 1.20048 0.86178 0.80525 0.78886 0.80268 1.18364 1.19994 1.18631 1.20574 0.89384 0.98780 1.09164 0.93369 0.93316 0.89448 0.86809 0.89938 0.84207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.80 101.05 0.99 1.43 15 2 O -0.32 -6.17 10.49 -19.56 -0.21 -6.37 15 3 C 0.13 2.81 6.67 -39.38 -0.26 2.55 15 4 C -0.26 -5.24 8.74 -38.74 -0.34 -5.58 15 5 C -0.01 -0.29 5.73 -106.92 -0.61 -0.90 15 6 C 0.28 5.94 14.96 -22.47 -0.34 5.60 15 7 N -0.46 -9.87 18.54 41.84 0.78 -9.09 15 8 C 0.01 0.16 7.28 -38.15 -0.28 -0.12 15 9 F -0.15 -3.60 16.24 2.25 0.04 -3.56 15 10 C 0.11 2.64 5.57 -106.82 -0.60 2.05 15 11 C -0.44 -10.72 8.77 -37.78 -0.33 -11.05 15 12 H 0.09 2.17 7.74 -52.49 -0.41 1.76 15 13 C 0.08 1.72 5.13 -17.34 -0.09 1.63 15 14 N -0.77 -18.03 10.96 55.55 0.61 -17.42 15 15 Si 0.92 17.02 29.60 -169.99 -5.03 11.98 15 16 H -0.26 -4.77 7.11 56.52 0.40 -4.37 15 17 H -0.28 -4.94 7.11 56.52 0.40 -4.54 15 18 H -0.26 -4.86 7.11 56.52 0.40 -4.46 15 19 C -0.16 -3.72 8.61 -38.70 -0.33 -4.06 15 20 H 0.05 0.62 7.65 -51.93 -0.40 0.22 15 21 H 0.05 0.64 7.65 -51.93 -0.40 0.25 15 22 H 0.09 0.96 8.14 -51.93 -0.42 0.54 15 23 H 0.11 2.00 6.25 -52.49 -0.33 1.67 15 24 H 0.29 6.10 8.30 -40.82 -0.34 5.76 15 25 H 0.14 3.40 6.15 -52.49 -0.32 3.08 15 LS Contribution 240.29 15.07 3.62 3.62 Total: -1.00 -25.60 240.29 -3.79 -29.39 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: -1.41 Total: -0.10 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -2.19 Total: -8.45 kcal Atomic # 7 Polarization: -27.89 SS G_CDS: 1.38 Total: -26.51 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.21 Total: -6.37 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.04 Total: -3.56 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 11.98 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -25.60 -3.79 -29.39 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575649420.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.172 kcal (2) G-P(sol) polarization free energy of solvation -25.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds