Wall clock time and date at job start Mon Mar 30 2020 02:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35942 * 116.99969 * 2 1 4 4 C 1.38878 * 119.80337 * 359.97438 * 3 2 1 5 5 C 1.39847 * 120.32977 * 180.02562 * 4 3 2 6 6 C 1.43203 * 120.02880 * 180.02562 * 5 4 3 7 7 N 5.84239 * 80.77039 * 359.97438 * 2 1 3 8 8 C 1.39444 * 119.94299 * 0.28336 * 5 4 3 9 9 F 1.35104 * 120.19553 * 179.71786 * 8 5 4 10 10 C 1.40846 * 119.61356 * 359.42644 * 8 5 4 11 11 C 1.41318 * 120.16486 * 180.29648 * 10 8 5 12 12 H 1.07998 * 119.99944 * 25.01190 * 11 10 8 13 13 C 1.39920 * 119.99557 * 205.01733 * 11 10 8 14 14 N 1.30851 * 120.00353 * 17.82740 * 13 11 10 15 15 Si 1.86809 * 119.99625 * 197.82677 * 13 11 10 16 16 H 1.48501 * 109.46706 * 59.99919 * 15 13 11 17 17 H 1.48494 * 109.47061 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.46992 * 299.99898 * 15 13 11 19 19 C 1.38142 * 119.80350 * 180.02562 * 3 2 1 20 20 H 1.09005 * 109.46958 * 300.00236 * 1 2 3 21 21 H 1.08995 * 109.47360 * 60.00078 * 1 2 3 22 22 H 1.09005 * 109.47450 * 180.02562 * 1 2 3 23 23 H 1.07997 * 119.83842 * 0.04928 * 4 3 2 24 24 H 0.97000 * 119.99494 * 180.02562 * 14 13 11 25 25 H 1.07999 * 119.97851 * 359.97438 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2858 2.3734 -0.0005 5 6 1.9092 3.6252 -0.0011 6 6 1.1188 4.8194 -0.0011 7 7 0.4920 5.7667 -0.0026 8 6 3.3011 3.7096 -0.0071 9 9 3.9086 4.9163 -0.0134 10 6 4.0699 2.5295 -0.0003 11 6 5.4813 2.6015 0.0001 12 1 5.9772 3.4776 0.3911 13 6 6.2361 1.5377 -0.5062 14 7 5.6737 0.6482 -1.2838 15 14 8.0468 1.3875 -0.0720 16 1 8.1940 1.2631 1.4005 17 1 8.6154 0.1840 -0.7303 18 1 8.7703 2.5962 -0.5415 19 6 3.4259 1.2788 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 0.2077 2.3101 -0.0001 24 1 6.1970 -0.0895 -1.6344 25 1 4.0107 0.3708 -0.0005 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575649420.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:34 Heat of formation + Delta-G solvation = -57.282370 kcal Electronic energy + Delta-G solvation = -14163.177141 eV Core-core repulsion = 11441.765020 eV Total energy + Delta-G solvation = -2721.412121 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.38633 -40.59539 -38.35789 -37.41692 -35.47013 -32.11981 -30.77353 -28.05007 -27.20640 -24.56754 -22.58788 -20.67322 -18.36507 -17.97402 -17.74899 -17.49040 -16.60167 -16.43681 -16.07788 -15.16470 -14.87542 -14.64147 -14.41406 -14.20864 -13.88515 -13.54427 -13.29363 -12.88616 -12.78911 -12.55855 -12.36414 -11.95750 -11.59660 -11.52886 -11.03250 -9.70090 -8.92957 -8.68428 -6.52724 0.03357 0.72240 1.43859 1.51216 1.54217 1.57490 2.04722 2.21442 2.61028 2.67936 2.93126 3.39658 3.73734 4.36282 4.44403 4.54873 4.63177 4.74862 4.83383 5.09735 5.22971 5.30273 5.60930 5.73171 5.84806 6.27274 6.36929 6.63836 6.69617 6.81490 8.19780 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.025153 B = 0.010932 C = 0.007801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.915162 B = 2560.656623 C = 3588.451780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.139 3.861 4 C -0.241 4.241 5 C -0.008 4.008 6 C 0.287 3.713 7 N -0.459 5.459 8 C -0.023 4.023 9 F -0.159 7.159 10 C 0.089 3.911 11 C -0.476 4.476 12 H 0.084 0.916 13 C 0.042 3.958 14 N -0.800 5.800 15 Si 0.986 3.014 16 H -0.257 1.257 17 H -0.262 1.262 18 H -0.262 1.262 19 C -0.176 4.176 20 H 0.062 0.938 21 H 0.058 0.942 22 H 0.120 0.880 23 H 0.148 0.852 24 H 0.298 0.702 25 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.744 -4.858 1.612 5.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.094 3.906 4 C -0.263 4.263 5 C -0.013 4.013 6 C -0.027 4.027 7 N -0.135 5.135 8 C -0.046 4.046 9 F -0.138 7.138 10 C 0.085 3.915 11 C -0.503 4.503 12 H 0.102 0.898 13 C -0.176 4.176 14 N -0.423 5.423 15 Si 0.806 3.194 16 H -0.181 1.181 17 H -0.186 1.186 18 H -0.186 1.186 19 C -0.197 4.197 20 H 0.080 0.920 21 H 0.077 0.923 22 H 0.138 0.862 23 H 0.166 0.834 24 H 0.109 0.891 25 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.587 -3.751 1.446 5.388 hybrid contribution 0.855 0.055 -0.025 0.857 sum -2.733 -3.696 1.421 4.811 Atomic orbital electron populations 1.23284 0.77148 1.05160 1.01953 1.86052 1.22994 1.26689 1.89234 1.18600 0.91703 0.83845 0.96494 1.20497 0.99658 0.88682 1.17510 1.15492 0.88695 0.88127 1.08976 1.25749 0.92264 0.92456 0.92252 1.81082 1.10674 1.10705 1.11077 1.17936 0.88735 0.80574 1.17396 1.91289 1.84092 1.43347 1.95048 1.17434 0.94101 0.89079 0.90849 1.19751 0.90876 1.03891 1.35826 0.89783 1.26752 1.06040 0.93299 0.91553 1.69813 1.41110 1.10931 1.20487 0.85172 0.75151 0.79078 0.79998 1.18082 1.18643 1.18643 1.20526 0.90656 0.97967 1.10517 0.91952 0.92303 0.86229 0.83398 0.89071 0.85571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.80 113.37 1.11 1.57 15 2 O -0.34 -12.16 10.49 -92.89 -0.97 -13.13 15 3 C 0.14 5.75 6.67 22.40 0.15 5.90 15 4 C -0.24 -9.23 8.74 22.81 0.20 -9.03 15 5 C -0.01 -0.35 5.73 -21.35 -0.12 -0.48 15 6 C 0.29 11.75 14.96 88.33 1.32 13.07 15 7 N -0.46 -19.00 18.54 19.00 0.35 -18.65 15 8 C -0.02 -1.13 7.28 23.20 0.17 -0.96 15 9 F -0.16 -7.78 16.24 44.97 0.73 -7.05 15 10 C 0.09 4.47 5.57 -21.29 -0.12 4.35 15 11 C -0.48 -23.90 8.77 23.44 0.21 -23.69 15 12 H 0.08 4.17 7.74 -2.91 -0.02 4.15 15 13 C 0.04 1.95 5.13 85.25 0.44 2.38 15 14 N -0.80 -37.80 10.96 21.82 0.24 -37.56 15 15 Si 0.99 34.86 29.60 68.60 2.03 36.89 15 16 H -0.26 -8.89 7.11 99.48 0.71 -8.18 15 17 H -0.26 -8.64 7.11 99.48 0.71 -7.94 15 18 H -0.26 -9.19 7.11 99.48 0.71 -8.49 15 19 C -0.18 -8.37 8.61 22.84 0.20 -8.18 15 20 H 0.06 1.35 7.65 -2.38 -0.02 1.33 15 21 H 0.06 1.32 7.65 -2.39 -0.02 1.30 15 22 H 0.12 2.13 8.14 -2.38 -0.02 2.11 15 23 H 0.15 4.60 6.25 -2.91 -0.02 4.58 15 24 H 0.30 12.58 8.30 -92.71 -0.77 11.81 15 25 H 0.13 6.30 6.15 -2.91 -0.02 6.28 15 Total: -1.00 -54.75 240.29 7.16 -47.58 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 1.24 Total: 6.97 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: 3.55 Total: -15.05 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.59 Total: -56.21 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.97 Total: -13.13 kcal Atomic # 9 Polarization: -7.78 SS G_CDS: 0.73 Total: -7.05 kcal Atomic # 14 Polarization: 34.86 SS G_CDS: 2.03 Total: 36.89 kcal Total: -54.75 7.16 -47.58 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575649420.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.698 kcal (2) G-P(sol) polarization free energy of solvation -54.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds