Wall clock time and date at job start Mon Mar 30 2020 02:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35620 * 117.00126 * 2 1 4 4 C 1.38106 * 120.13600 * 0.02562 * 3 2 1 5 5 C 1.38644 * 121.09638 * 179.97438 * 4 3 2 6 6 F 1.35096 * 119.33536 * 180.02562 * 5 4 3 7 7 C 1.38547 * 121.32903 * 0.02562 * 5 4 3 8 8 C 1.39264 * 120.16188 * 359.97438 * 7 5 4 9 9 C 1.43203 * 120.53004 * 179.97438 * 8 7 5 10 10 N 5.93739 * 151.56047 * 0.02562 * 2 1 3 11 11 C 1.41503 * 120.13549 * 180.26242 * 3 2 1 12 12 C 1.40428 * 120.62806 * 0.02562 * 11 3 2 13 13 H 1.08001 * 120.00059 * 218.65439 * 12 11 3 14 14 C 1.40255 * 119.99962 * 38.65359 * 12 11 3 15 15 N 1.30689 * 120.00188 * 20.08013 * 14 12 11 16 16 Si 1.86794 * 119.99998 * 200.08535 * 14 12 11 17 17 H 1.48499 * 109.47427 * 89.99671 * 16 14 12 18 18 H 1.48504 * 109.47334 * 209.99892 * 16 14 12 19 19 H 1.48500 * 109.47308 * 329.99487 * 16 14 12 20 20 H 1.09002 * 109.46814 * 300.00114 * 1 2 3 21 21 H 1.09001 * 109.47026 * 59.99253 * 1 2 3 22 22 H 1.08993 * 109.47515 * 179.97438 * 1 2 3 23 23 H 1.08000 * 119.45888 * 359.97438 * 4 3 2 24 24 H 1.07996 * 119.91898 * 180.02562 * 7 5 4 25 25 H 0.97001 * 120.00143 * 183.84078 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2084 0.0000 4 6 1.2954 2.3684 0.0005 5 6 1.9040 3.6141 0.0011 6 9 1.1364 4.7258 0.0021 7 6 3.2836 3.7418 0.0006 8 6 4.0913 2.6073 0.0000 9 6 5.5181 2.7301 -0.0010 10 7 6.6499 2.8276 0.0013 11 6 3.4577 1.2857 -0.0056 12 6 4.2381 0.1183 -0.0118 13 1 5.1478 0.0738 0.5686 14 6 3.8361 -0.9899 -0.7716 15 7 2.9913 -0.8352 -1.7567 16 14 4.5081 -2.6872 -0.3755 17 1 3.6196 -3.3539 0.6100 18 1 4.5664 -3.4989 -1.6178 19 1 5.8726 -2.5584 0.1960 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5140 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 0.2173 2.3043 0.0005 24 1 3.7337 4.7235 0.0014 25 1 2.6704 -1.6085 -2.2464 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575649599.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:16 Heat of formation + Delta-G solvation = -37.235725 kcal Electronic energy + Delta-G solvation = -14410.201806 eV Core-core repulsion = 11689.658973 eV Total energy + Delta-G solvation = -2720.542833 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.70497 -38.78946 -36.37950 -34.76602 -33.87862 -30.01969 -29.41122 -26.69457 -25.33009 -22.33452 -21.26927 -18.32543 -17.63636 -16.04729 -15.48754 -15.27783 -14.82864 -14.70526 -14.29031 -14.19389 -13.37572 -12.70993 -12.59025 -12.57037 -11.94346 -11.75733 -11.41650 -11.26159 -11.01451 -10.94067 -10.68794 -10.39980 -10.04133 -9.82094 -9.24610 -7.70767 -7.30912 -7.02418 -4.64454 1.90915 2.49551 2.97509 3.01281 3.02341 3.76660 3.79025 4.00244 4.34348 4.45904 5.15551 5.22935 5.58292 5.75488 5.79435 5.81659 6.02663 6.09647 6.34635 6.69591 6.80498 7.11183 7.25556 7.31906 7.74765 7.99918 8.08462 8.42577 8.70183 8.72958 9.84942 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.024308 B = 0.013288 C = 0.008980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.616727 B = 2106.643672 C = 3117.353198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.277 6.277 3 C 0.103 3.897 4 C -0.202 4.202 5 C -0.012 4.012 6 F -0.166 7.166 7 C -0.084 4.084 8 C -0.145 4.145 9 C 0.305 3.695 10 N -0.497 5.497 11 C 0.136 3.864 12 C -0.427 4.427 13 H 0.090 0.910 14 C 0.085 3.915 15 N -0.738 5.738 16 Si 0.911 3.089 17 H -0.262 1.262 18 H -0.275 1.275 19 H -0.260 1.260 20 H 0.040 0.960 21 H 0.044 0.956 22 H 0.083 0.917 23 H 0.114 0.886 24 H 0.112 0.888 25 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.051 -1.721 1.490 6.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.189 6.189 3 C 0.057 3.943 4 C -0.223 4.223 5 C -0.032 4.032 6 F -0.146 7.146 7 C -0.106 4.106 8 C -0.151 4.151 9 C -0.005 4.005 10 N -0.176 5.176 11 C 0.130 3.870 12 C -0.453 4.453 13 H 0.108 0.892 14 C -0.140 4.140 15 N -0.359 5.359 16 Si 0.735 3.265 17 H -0.187 1.187 18 H -0.200 1.200 19 H -0.183 1.183 20 H 0.059 0.941 21 H 0.063 0.937 22 H 0.101 0.899 23 H 0.132 0.868 24 H 0.130 0.870 25 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.331 -1.842 1.245 4.868 hybrid contribution -0.819 -0.466 0.014 0.943 sum -5.150 -2.309 1.259 5.782 Atomic orbital electron populations 1.22825 0.81722 1.02095 1.00051 1.86194 1.18016 1.26392 1.88297 1.18700 0.91441 0.82830 1.01316 1.20612 0.99052 0.91587 1.11012 1.16440 0.87630 0.81345 1.17759 1.91320 1.75786 1.51813 1.95666 1.20332 0.91302 0.97144 1.01777 1.16152 0.83570 0.92460 1.22903 1.25362 0.92291 0.91438 0.91422 1.81034 1.12262 1.09822 1.14507 1.17735 0.88280 0.90807 0.90159 1.19485 1.07739 0.95975 1.22122 0.89180 1.25859 0.93976 1.01388 0.92758 1.69627 1.21024 1.33968 1.11269 0.86217 0.80613 0.80514 0.79172 1.18718 1.20037 1.18324 0.94101 0.93707 0.89878 0.86819 0.86957 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.81 101.05 0.99 1.46 15 2 O -0.28 -5.90 7.40 -18.56 -0.14 -6.04 15 3 C 0.10 2.34 6.18 -38.39 -0.24 2.10 15 4 C -0.20 -4.22 8.96 -39.48 -0.35 -4.57 15 5 C -0.01 -0.24 7.27 -39.32 -0.29 -0.53 15 6 F -0.17 -3.39 17.24 2.25 0.04 -3.35 15 7 C -0.08 -1.78 9.72 -39.09 -0.38 -2.16 15 8 C -0.14 -3.32 5.94 -104.23 -0.62 -3.94 15 9 C 0.31 7.12 14.50 -22.47 -0.33 6.79 15 10 N -0.50 -11.87 18.54 41.84 0.78 -11.10 15 11 C 0.14 3.29 5.53 -104.47 -0.58 2.71 15 12 C -0.43 -10.40 8.21 -38.00 -0.31 -10.71 15 13 H 0.09 2.20 7.74 -52.49 -0.41 1.79 15 14 C 0.09 1.96 4.43 -17.28 -0.08 1.88 15 15 N -0.74 -17.18 11.23 55.56 0.62 -16.56 15 16 Si 0.91 17.50 29.61 -169.99 -5.03 12.47 15 17 H -0.26 -4.96 7.11 56.52 0.40 -4.56 15 18 H -0.28 -5.15 7.11 56.52 0.40 -4.75 15 19 H -0.26 -5.06 7.11 56.52 0.40 -4.66 15 20 H 0.04 0.59 7.65 -51.93 -0.40 0.19 15 21 H 0.04 0.69 7.65 -51.93 -0.40 0.30 15 22 H 0.08 1.13 8.14 -51.93 -0.42 0.71 15 23 H 0.11 2.10 6.23 -52.49 -0.33 1.77 15 24 H 0.11 2.13 8.06 -52.49 -0.42 1.71 15 25 H 0.29 6.10 8.30 -40.82 -0.34 5.76 15 LS Contribution 239.63 15.07 3.61 3.61 Total: -1.00 -25.86 239.63 -3.80 -29.67 By element: Atomic # 1 Polarization: -0.23 SS G_CDS: -1.51 Total: -1.73 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -2.18 Total: -6.97 kcal Atomic # 7 Polarization: -29.06 SS G_CDS: 1.40 Total: -27.66 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -0.14 Total: -6.04 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.04 Total: -3.35 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -25.86 -3.80 -29.67 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575649599.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.569 kcal (2) G-P(sol) polarization free energy of solvation -25.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds