Wall clock time and date at job start Mon Mar 30 2020 02:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35620 * 117.00126 * 2 1 4 4 C 1.38106 * 120.13600 * 0.02562 * 3 2 1 5 5 C 1.38644 * 121.09638 * 179.97438 * 4 3 2 6 6 F 1.35096 * 119.33536 * 180.02562 * 5 4 3 7 7 C 1.38547 * 121.32903 * 0.02562 * 5 4 3 8 8 C 1.39264 * 120.16188 * 359.97438 * 7 5 4 9 9 C 1.43203 * 120.53004 * 179.97438 * 8 7 5 10 10 N 5.93739 * 151.56047 * 0.02562 * 2 1 3 11 11 C 1.41503 * 120.13549 * 180.26242 * 3 2 1 12 12 C 1.40428 * 120.62806 * 0.02562 * 11 3 2 13 13 H 1.08001 * 120.00059 * 218.65439 * 12 11 3 14 14 C 1.40255 * 119.99962 * 38.65359 * 12 11 3 15 15 N 1.30689 * 120.00188 * 20.08013 * 14 12 11 16 16 Si 1.86794 * 119.99998 * 200.08535 * 14 12 11 17 17 H 1.48499 * 109.47427 * 89.99671 * 16 14 12 18 18 H 1.48504 * 109.47334 * 209.99892 * 16 14 12 19 19 H 1.48500 * 109.47308 * 329.99487 * 16 14 12 20 20 H 1.09002 * 109.46814 * 300.00114 * 1 2 3 21 21 H 1.09001 * 109.47026 * 59.99253 * 1 2 3 22 22 H 1.08993 * 109.47515 * 179.97438 * 1 2 3 23 23 H 1.08000 * 119.45888 * 359.97438 * 4 3 2 24 24 H 1.07996 * 119.91898 * 180.02562 * 7 5 4 25 25 H 0.97001 * 120.00143 * 183.84078 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2084 0.0000 4 6 1.2954 2.3684 0.0005 5 6 1.9040 3.6141 0.0011 6 9 1.1364 4.7258 0.0021 7 6 3.2836 3.7418 0.0006 8 6 4.0913 2.6073 0.0000 9 6 5.5181 2.7301 -0.0010 10 7 6.6499 2.8276 0.0013 11 6 3.4577 1.2857 -0.0056 12 6 4.2381 0.1183 -0.0118 13 1 5.1478 0.0738 0.5686 14 6 3.8361 -0.9899 -0.7716 15 7 2.9913 -0.8352 -1.7567 16 14 4.5081 -2.6872 -0.3755 17 1 3.6196 -3.3539 0.6100 18 1 4.5664 -3.4989 -1.6178 19 1 5.8726 -2.5584 0.1960 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5140 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 0.2173 2.3043 0.0005 24 1 3.7337 4.7235 0.0014 25 1 2.6704 -1.6085 -2.2464 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575649599.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:15 Heat of formation + Delta-G solvation = -50.608475 kcal Electronic energy + Delta-G solvation = -14410.781692 eV Core-core repulsion = 11689.658973 eV Total energy + Delta-G solvation = -2721.122719 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.36598 -40.40909 -38.08411 -36.54976 -35.58966 -31.74173 -31.08544 -28.08138 -27.05211 -24.03208 -22.95633 -19.99695 -19.35291 -17.70412 -17.15325 -16.93579 -16.39373 -16.31363 -15.86636 -15.80505 -14.92580 -14.47726 -14.32867 -14.17522 -13.70710 -13.49960 -13.00421 -12.87145 -12.64446 -12.47066 -12.18915 -12.02701 -11.65894 -11.42291 -10.92350 -9.42846 -9.00100 -8.71447 -6.42721 0.16592 0.80357 1.42332 1.48503 1.52509 1.95060 2.20355 2.24561 2.69985 2.81725 3.40380 3.48900 3.94996 4.21719 4.41819 4.52313 4.57708 4.68717 4.83082 4.98903 5.08754 5.41888 5.54828 5.59660 6.04189 6.27119 6.35224 6.67807 6.88896 7.08925 8.18576 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.024308 B = 0.013288 C = 0.008980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.616727 B = 2106.643672 C = 3117.353198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.297 6.297 3 C 0.097 3.903 4 C -0.199 4.199 5 C -0.009 4.009 6 F -0.159 7.159 7 C -0.085 4.085 8 C -0.159 4.159 9 C 0.310 3.690 10 N -0.514 5.514 11 C 0.112 3.888 12 C -0.457 4.457 13 H 0.076 0.924 14 C 0.056 3.944 15 N -0.760 5.760 16 Si 0.971 3.029 17 H -0.255 1.255 18 H -0.264 1.264 19 H -0.269 1.269 20 H 0.057 0.943 21 H 0.050 0.950 22 H 0.107 0.893 23 H 0.140 0.860 24 H 0.133 0.867 25 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.263 -2.168 1.528 7.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.210 6.210 3 C 0.050 3.950 4 C -0.220 4.220 5 C -0.030 4.030 6 F -0.139 7.139 7 C -0.106 4.106 8 C -0.165 4.165 9 C 0.001 3.999 10 N -0.194 5.194 11 C 0.106 3.894 12 C -0.483 4.483 13 H 0.094 0.906 14 C -0.167 4.167 15 N -0.382 5.382 16 Si 0.792 3.208 17 H -0.179 1.179 18 H -0.189 1.189 19 H -0.193 1.193 20 H 0.076 0.924 21 H 0.068 0.932 22 H 0.125 0.875 23 H 0.157 0.843 24 H 0.151 0.849 25 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.562 -2.276 1.281 6.145 hybrid contribution -0.542 -0.259 0.002 0.601 sum -6.104 -2.535 1.283 6.733 Atomic orbital electron populations 1.23139 0.79110 1.04165 1.01056 1.86148 1.20745 1.25942 1.88149 1.18737 0.91141 0.83856 1.01260 1.20839 1.00377 0.90899 1.09884 1.16561 0.87739 0.81736 1.16921 1.91341 1.75535 1.51440 1.95559 1.20503 0.91398 0.97547 1.01167 1.16307 0.83449 0.92976 1.23804 1.25510 0.92450 0.90949 0.90994 1.81015 1.12614 1.10406 1.15336 1.18072 0.89547 0.91123 0.90618 1.19573 1.07933 0.97415 1.23409 0.90564 1.26456 0.94130 1.03898 0.92216 1.69623 1.21729 1.35235 1.11607 0.85345 0.79446 0.76728 0.79323 1.17893 1.18879 1.19305 0.92404 0.93183 0.87469 0.84256 0.84907 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 9.81 113.37 1.11 1.72 15 2 O -0.30 -12.27 7.40 -89.32 -0.66 -12.93 15 3 C 0.10 4.28 6.18 23.04 0.14 4.42 15 4 C -0.20 -7.94 8.96 22.34 0.20 -7.74 15 5 C -0.01 -0.38 7.27 22.44 0.16 -0.22 15 6 F -0.16 -6.09 17.24 44.97 0.78 -5.31 15 7 C -0.08 -3.49 9.72 22.59 0.22 -3.27 15 8 C -0.16 -7.29 5.94 -19.61 -0.12 -7.41 15 9 C 0.31 14.57 14.50 88.33 1.28 15.85 15 10 N -0.51 -24.67 18.54 19.01 0.35 -24.32 15 11 C 0.11 5.43 5.53 -19.77 -0.11 5.32 15 12 C -0.46 -22.53 8.21 23.29 0.19 -22.34 15 13 H 0.08 3.83 7.74 -2.91 -0.02 3.81 15 14 C 0.06 2.56 4.43 85.35 0.38 2.94 15 15 N -0.76 -34.96 11.23 21.88 0.25 -34.71 15 16 Si 0.97 35.43 29.61 68.60 2.03 37.46 15 17 H -0.25 -8.91 7.11 99.48 0.71 -8.20 15 18 H -0.26 -9.09 7.11 99.48 0.71 -8.39 15 19 H -0.27 -10.10 7.11 99.48 0.71 -9.39 15 20 H 0.06 1.50 7.65 -2.39 -0.02 1.48 15 21 H 0.05 1.42 7.65 -2.39 -0.02 1.40 15 22 H 0.11 2.61 8.14 -2.39 -0.02 2.59 15 23 H 0.14 4.73 6.23 -2.91 -0.02 4.71 15 24 H 0.13 4.81 8.06 -2.91 -0.02 4.79 15 25 H 0.30 12.28 8.30 -92.71 -0.77 11.51 15 Total: -1.00 -53.66 239.63 7.44 -46.23 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: 1.23 Total: 4.30 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 3.46 Total: -10.73 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: 0.60 Total: -59.03 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.66 Total: -12.93 kcal Atomic # 9 Polarization: -6.09 SS G_CDS: 0.78 Total: -5.31 kcal Atomic # 14 Polarization: 35.43 SS G_CDS: 2.03 Total: 37.46 kcal Total: -53.66 7.44 -46.23 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575649599.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.379 kcal (2) G-P(sol) polarization free energy of solvation -53.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds