Wall clock time and date at job start Mon Mar 30 2020 02:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35824 * 117.00135 * 2 1 4 4 C 1.37889 * 119.47669 * 0.02562 * 3 2 1 5 5 C 1.40713 * 119.83428 * 179.97438 * 4 3 2 6 6 C 1.40737 * 120.56167 * 180.02562 * 5 4 3 7 7 H 1.07994 * 120.00456 * 155.47293 * 6 5 4 8 8 C 1.40207 * 119.99818 * 335.48141 * 6 5 4 9 9 N 1.30691 * 119.99934 * 342.12941 * 8 6 5 10 10 Si 1.86796 * 120.00144 * 162.12629 * 8 6 5 11 11 H 1.48504 * 109.47155 * 60.00128 * 10 8 6 12 12 H 1.48503 * 109.47011 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47166 * 299.99991 * 10 8 6 14 14 C 1.46597 * 118.88536 * 359.97438 * 5 4 3 15 15 C 1.43197 * 120.50857 * 179.97438 * 14 5 4 16 16 N 6.72858 * 118.08018 * 0.02562 * 2 1 3 17 17 C 1.39474 * 118.98395 * 0.02562 * 14 5 4 18 18 C 1.38135 * 120.07693 * 359.74387 * 17 14 5 19 19 F 1.35096 * 119.41550 * 180.24850 * 18 17 14 20 20 H 1.09003 * 109.46847 * 299.99387 * 1 2 3 21 21 H 1.09000 * 109.46819 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47426 * 59.99391 * 1 2 3 23 23 H 1.07997 * 120.08436 * 359.95476 * 4 3 2 24 24 H 0.97000 * 120.00222 * 185.04496 * 9 8 6 25 25 H 1.08006 * 119.95883 * 179.97438 * 17 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0457 1.2102 0.0000 4 6 1.2842 2.3597 0.0005 5 6 1.9152 3.6174 0.0011 6 6 1.1529 4.8005 0.0022 7 1 1.5758 5.7151 0.3908 8 6 -0.1556 4.7917 -0.5012 9 7 -0.5512 3.8164 -1.2760 10 14 -1.3337 6.1740 -0.0643 11 1 -0.7765 7.4670 -0.5363 12 1 -2.6448 5.9322 -0.7185 13 1 -1.5162 6.2218 1.4086 14 6 3.3801 3.6748 0.0016 15 6 4.0582 4.9360 0.0017 16 7 4.5962 5.9366 0.0027 17 6 4.1031 2.4821 0.0011 18 6 3.4398 1.2704 0.0053 19 9 4.1535 0.1233 0.0098 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8899 23 1 0.2062 2.2950 0.0002 24 1 -1.4310 3.8469 -1.6833 25 1 5.1829 2.5060 0.0011 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575650095.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:56 Heat of formation + Delta-G solvation = -47.403019 kcal Electronic energy + Delta-G solvation = -14248.571600 eV Core-core repulsion = 11527.587880 eV Total energy + Delta-G solvation = -2720.983720 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.52405 -38.84598 -36.76330 -34.98737 -33.92984 -29.91929 -29.35141 -26.99434 -25.50935 -22.06097 -21.42764 -18.21519 -17.72592 -16.65199 -15.80574 -15.23445 -15.14367 -14.61708 -14.05332 -13.75085 -13.32811 -12.88708 -12.68219 -12.53072 -12.03306 -11.75171 -11.57403 -11.21420 -11.14673 -11.04853 -10.75316 -10.39500 -10.03342 -9.99337 -9.46739 -7.87780 -7.36389 -7.11570 -4.88334 2.01272 2.40967 2.83524 2.86070 2.93564 3.58641 3.82031 3.95001 3.99632 4.32775 5.16903 5.23512 5.60425 5.70120 5.77039 5.90705 6.00206 6.41548 6.53226 6.61999 6.68939 7.08287 7.27749 7.51576 7.58634 7.86862 8.15689 8.27420 8.45277 8.73045 9.61053 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.022866 B = 0.012477 C = 0.008276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.250313 B = 2243.547273 C = 3382.295192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.324 6.324 3 C 0.139 3.861 4 C -0.239 4.239 5 C 0.167 3.833 6 C -0.422 4.422 7 H 0.091 0.909 8 C 0.076 3.924 9 N -0.761 5.761 10 Si 0.919 3.081 11 H -0.259 1.259 12 H -0.272 1.272 13 H -0.256 1.256 14 C -0.188 4.188 15 C 0.303 3.697 16 N -0.503 5.503 17 C -0.026 4.026 18 C -0.068 4.068 19 F -0.161 7.161 20 H 0.050 0.950 21 H 0.086 0.914 22 H 0.060 0.940 23 H 0.144 0.856 24 H 0.293 0.707 25 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.269 -3.804 1.239 5.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.237 6.237 3 C 0.093 3.907 4 C -0.259 4.259 5 C 0.162 3.838 6 C -0.449 4.449 7 H 0.109 0.891 8 C -0.148 4.148 9 N -0.383 5.383 10 Si 0.741 3.259 11 H -0.184 1.184 12 H -0.197 1.197 13 H -0.180 1.180 14 C -0.194 4.194 15 C -0.006 4.006 16 N -0.182 5.182 17 C -0.048 4.048 18 C -0.089 4.089 19 F -0.141 7.141 20 H 0.069 0.931 21 H 0.104 0.896 22 H 0.079 0.921 23 H 0.162 0.838 24 H 0.104 0.896 25 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.562 -2.618 1.133 4.564 hybrid contribution -0.931 0.120 -0.005 0.939 sum -4.493 -2.498 1.128 5.263 Atomic orbital electron populations 1.22915 0.79188 1.02237 1.01902 1.85961 1.20858 1.27894 1.89019 1.18942 0.90313 0.84738 0.96756 1.21232 1.00115 0.89870 1.14650 1.18163 0.87902 0.92765 0.85010 1.19762 0.96156 0.96667 1.32344 0.89125 1.26172 0.98608 0.97396 0.92588 1.69691 1.20505 1.29947 1.18162 0.86144 0.78362 0.80762 0.80588 1.18351 1.19674 1.18033 1.16555 0.91886 0.85077 1.25879 1.25516 0.91479 0.92439 0.91214 1.81042 1.10922 1.11265 1.14997 1.20254 0.98231 0.89588 0.96712 1.16108 0.85778 0.81459 1.25506 1.91316 1.78150 1.48473 1.96124 0.93129 0.89581 0.92142 0.83833 0.89576 0.86299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.79 101.05 0.99 1.51 15 2 O -0.32 -6.62 10.31 -19.19 -0.20 -6.81 15 3 C 0.14 3.09 6.68 -39.22 -0.26 2.82 15 4 C -0.24 -5.41 7.66 -38.78 -0.30 -5.71 15 5 C 0.17 3.97 5.73 -104.65 -0.60 3.37 15 6 C -0.42 -9.94 8.57 -37.90 -0.32 -10.26 15 7 H 0.09 2.14 7.38 -52.49 -0.39 1.76 15 8 C 0.08 1.65 5.15 -17.30 -0.09 1.56 15 9 N -0.76 -16.52 10.97 55.56 0.61 -15.92 15 10 Si 0.92 16.37 29.60 -169.99 -5.03 11.34 15 11 H -0.26 -4.74 7.11 56.52 0.40 -4.33 15 12 H -0.27 -4.63 7.11 56.52 0.40 -4.23 15 13 H -0.26 -4.55 7.11 56.52 0.40 -4.15 15 14 C -0.19 -4.28 5.94 -104.14 -0.62 -4.90 15 15 C 0.30 6.98 14.29 -22.47 -0.32 6.66 15 16 N -0.50 -11.87 18.54 41.84 0.78 -11.09 15 17 C -0.03 -0.56 9.72 -39.16 -0.38 -0.94 15 18 C -0.07 -1.51 7.29 -39.13 -0.29 -1.79 15 19 F -0.16 -3.54 17.05 2.25 0.04 -3.50 15 20 H 0.05 0.77 7.63 -51.93 -0.40 0.38 15 21 H 0.09 1.07 8.14 -51.93 -0.42 0.65 15 22 H 0.06 0.98 7.63 -51.93 -0.40 0.59 15 23 H 0.14 3.17 4.32 -52.49 -0.23 2.94 15 24 H 0.29 5.67 8.30 -40.82 -0.34 5.34 15 25 H 0.12 2.22 8.06 -52.48 -0.42 1.80 15 LS Contribution 240.06 15.07 3.62 3.62 Total: -1.00 -25.54 240.06 -3.76 -29.30 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -1.39 Total: 0.73 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -2.19 Total: -7.67 kcal Atomic # 7 Polarization: -28.39 SS G_CDS: 1.38 Total: -27.01 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.20 Total: -6.81 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.04 Total: -3.50 kcal Atomic # 14 Polarization: 16.37 SS G_CDS: -5.03 Total: 11.34 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -25.54 -3.76 -29.30 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575650095.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.103 kcal (2) G-P(sol) polarization free energy of solvation -25.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds