Wall clock time and date at job start Mon Mar 30 2020 03:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37813 * 120.05251 * 2 1 4 4 C 1.38518 * 120.30766 * 179.97438 * 3 2 1 5 5 C 1.38118 * 120.39652 * 0.25800 * 4 3 2 6 6 C 1.38640 * 120.09225 * 359.48357 * 5 4 3 7 7 O 1.35663 * 120.15329 * 180.27626 * 6 5 4 8 8 C 1.39729 * 120.04501 * 179.97438 * 2 1 3 9 9 C 1.47429 * 120.19949 * 0.03798 * 8 2 1 10 10 O 1.21621 * 119.99787 * 90.00394 * 9 8 2 11 11 N 1.34768 * 120.00048 * 270.00422 * 9 8 2 12 12 C 1.36908 * 120.00075 * 180.02562 * 11 9 8 13 13 H 1.07996 * 120.00193 * 359.97438 * 12 11 9 14 14 C 1.39028 * 119.99974 * 179.97438 * 12 11 9 15 15 N 1.31374 * 120.00049 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99655 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46591 * 90.00396 * 16 14 12 18 18 H 1.48501 * 109.46976 * 209.99853 * 16 14 12 19 19 H 1.48499 * 109.47303 * 330.00253 * 16 14 12 20 20 H 1.09000 * 109.47313 * 89.99733 * 1 2 3 21 21 H 1.08993 * 109.47365 * 210.00124 * 1 2 3 22 22 H 1.09000 * 109.46664 * 329.99962 * 1 2 3 23 23 H 1.08005 * 119.84400 * 359.95454 * 3 2 1 24 24 H 1.08002 * 119.79779 * 179.97438 * 4 3 2 25 25 H 1.08003 * 119.94852 * 179.74978 * 5 4 3 26 26 H 0.96699 * 114.00607 * 270.23917 * 7 6 5 27 27 H 0.97001 * 120.00255 * 359.97438 * 11 9 8 28 28 H 0.97006 * 120.00215 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1929 0.0000 4 6 3.5823 1.1990 0.0005 5 6 4.2865 0.0108 -0.0043 6 6 3.6090 -1.1987 0.0011 7 8 4.2994 -2.3665 0.0020 8 6 2.2066 -1.2095 0.0005 9 6 1.4749 -2.4894 0.0003 10 8 1.1738 -3.0175 -1.0531 11 7 1.1398 -3.0743 1.1673 12 6 0.4607 -4.2631 1.1670 13 1 0.1933 -4.7321 0.2317 14 6 0.1154 -4.8667 2.3709 15 7 0.4403 -4.2960 3.5088 16 14 -0.8116 -6.4884 2.3705 17 1 0.1583 -7.6129 2.3707 18 1 -1.6653 -6.5708 3.5828 19 1 -1.6647 -6.5706 1.1577 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.6555 2.1272 -0.0007 24 1 4.1149 2.1386 0.0001 25 1 5.3664 0.0241 -0.0079 26 1 4.5000 -2.7057 -0.8811 27 1 1.3802 -2.6533 2.0074 28 1 0.1997 -4.7173 4.3488 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606261788.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:39 Heat of formation + Delta-G solvation = -62.916145 kcal Electronic energy + Delta-G solvation = -14663.685370 eV Core-core repulsion = 12065.489256 eV Total energy + Delta-G solvation = -2598.196114 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.76380 -37.49919 -36.49664 -33.93209 -32.23882 -31.18017 -29.68233 -26.77638 -25.12371 -22.78380 -21.33994 -19.43615 -18.00847 -17.61389 -16.49750 -15.73399 -15.06713 -14.87139 -14.29132 -13.88477 -13.32350 -13.13243 -12.81530 -12.65543 -12.23804 -11.65475 -11.50903 -11.38325 -11.23405 -11.07304 -10.40184 -10.25929 -10.23781 -9.53114 -8.64133 -8.33901 -8.23107 -7.99116 -6.43278 -3.83727 1.46839 1.54305 3.16805 3.26118 3.31975 3.80028 3.85260 4.17468 4.52744 4.92313 5.09402 5.13078 5.27466 5.50948 5.67013 5.75283 5.98197 6.02789 6.07637 6.32593 6.49345 6.58358 6.67446 6.84998 7.07893 7.53301 8.00691 8.03547 8.57565 9.13905 9.52018 10.02412 10.73856 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.039013 B = 0.008204 C = 0.007714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.532235 B = 3411.986723 C = 3628.964880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.042 4.042 3 C -0.137 4.137 4 C -0.102 4.102 5 C -0.158 4.158 6 C 0.135 3.865 7 O -0.490 6.490 8 C -0.118 4.118 9 C 0.485 3.515 10 O -0.595 6.595 11 N -0.541 5.541 12 C -0.304 4.304 13 H 0.105 0.895 14 C 0.026 3.974 15 N -0.894 5.894 16 Si 0.932 3.068 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.269 1.269 20 H 0.073 0.927 21 H 0.077 0.923 22 H 0.066 0.934 23 H 0.124 0.876 24 H 0.123 0.877 25 H 0.127 0.873 26 H 0.391 0.609 27 H 0.394 0.606 28 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.305 9.542 -3.760 11.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.043 4.043 3 C -0.155 4.155 4 C -0.120 4.120 5 C -0.177 4.177 6 C 0.089 3.911 7 O -0.300 6.300 8 C -0.122 4.122 9 C 0.271 3.729 10 O -0.482 6.482 11 N -0.174 5.174 12 C -0.433 4.433 13 H 0.122 0.878 14 C -0.177 4.177 15 N -0.535 5.535 16 Si 0.758 3.242 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.193 1.193 20 H 0.092 0.908 21 H 0.096 0.904 22 H 0.085 0.915 23 H 0.142 0.858 24 H 0.141 0.859 25 H 0.144 0.856 26 H 0.247 0.753 27 H 0.228 0.772 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.014 9.153 -3.622 10.631 hybrid contribution -0.116 -0.611 0.126 0.635 sum 3.898 8.542 -3.496 10.019 Atomic orbital electron populations 1.20856 0.90655 1.03321 1.02750 1.19915 0.96353 0.91414 0.96647 1.20913 0.94154 0.97242 1.03180 1.20974 0.94046 0.97397 0.99602 1.21278 1.00163 0.91763 1.04493 1.18533 0.88574 0.85609 0.98390 1.84746 1.74943 1.36916 1.33421 1.20627 0.93373 0.95308 1.02885 1.17421 0.85180 0.85244 0.85075 1.90624 1.60167 1.66052 1.31333 1.41828 1.48461 1.20584 1.06556 1.19727 1.31429 0.97662 0.94521 0.87763 1.25320 0.97923 0.99855 0.94596 1.69617 1.46383 1.39821 0.97653 0.85838 0.79223 0.81241 0.77866 1.20292 1.20848 1.19310 0.90823 0.90396 0.91516 0.85832 0.85880 0.85552 0.75263 0.77192 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.99 9.62 36.01 0.35 -1.65 15 2 C -0.04 -0.76 5.91 -104.22 -0.62 -1.37 15 3 C -0.14 -1.97 9.68 -39.63 -0.38 -2.35 15 4 C -0.10 -1.36 10.03 -39.52 -0.40 -1.76 15 5 C -0.16 -2.37 9.98 -39.48 -0.39 -2.76 15 6 C 0.13 2.51 6.72 -38.68 -0.26 2.25 15 7 O -0.49 -9.09 12.95 -18.69 -0.24 -9.33 15 8 C -0.12 -2.47 5.64 -104.85 -0.59 -3.06 15 9 C 0.49 12.30 5.20 -12.52 -0.07 12.24 15 10 O -0.60 -16.96 16.68 5.26 0.09 -16.87 15 11 N -0.54 -14.51 5.28 -11.96 -0.06 -14.57 15 12 C -0.30 -8.66 9.68 -14.99 -0.15 -8.80 15 13 H 0.10 3.08 7.15 -52.49 -0.38 2.71 15 14 C 0.03 0.70 5.50 -17.45 -0.10 0.60 15 15 N -0.89 -24.85 13.05 55.50 0.72 -24.13 15 16 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 15 17 H -0.28 -6.24 7.11 56.52 0.40 -5.83 15 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 20 H 0.07 1.17 8.14 -51.93 -0.42 0.75 15 21 H 0.08 1.53 7.08 -51.93 -0.37 1.17 15 22 H 0.07 0.89 8.09 -51.93 -0.42 0.48 15 23 H 0.12 1.40 8.06 -52.48 -0.42 0.98 15 24 H 0.12 1.22 8.06 -52.49 -0.42 0.79 15 25 H 0.13 1.56 8.06 -52.48 -0.42 1.14 15 26 H 0.39 5.59 9.06 45.56 0.41 6.00 15 27 H 0.39 10.50 7.88 -40.82 -0.32 10.18 15 28 H 0.27 7.13 8.31 -40.82 -0.34 6.79 15 LS Contribution 256.68 15.07 3.87 3.87 Total: -1.00 -32.77 256.68 -5.15 -37.91 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -1.90 Total: 13.62 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -2.60 Total: -6.66 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.66 Total: -38.70 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.15 Total: -26.20 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -32.77 -5.15 -37.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606261788.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.002 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds