Wall clock time and date at job start Mon Mar 30 2020 03:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37813 * 120.05251 * 2 1 4 4 C 1.38518 * 120.30766 * 179.97438 * 3 2 1 5 5 C 1.38118 * 120.39652 * 0.25800 * 4 3 2 6 6 C 1.38640 * 120.09225 * 359.48357 * 5 4 3 7 7 O 1.35663 * 120.15329 * 180.27626 * 6 5 4 8 8 C 1.39729 * 120.04501 * 179.97438 * 2 1 3 9 9 C 1.47429 * 120.19949 * 0.03798 * 8 2 1 10 10 O 1.21621 * 119.99787 * 90.00394 * 9 8 2 11 11 N 1.34768 * 120.00048 * 270.00422 * 9 8 2 12 12 C 1.36908 * 120.00075 * 180.02562 * 11 9 8 13 13 H 1.07996 * 120.00193 * 359.97438 * 12 11 9 14 14 C 1.39028 * 119.99974 * 179.97438 * 12 11 9 15 15 N 1.31374 * 120.00049 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99655 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46591 * 90.00396 * 16 14 12 18 18 H 1.48501 * 109.46976 * 209.99853 * 16 14 12 19 19 H 1.48499 * 109.47303 * 330.00253 * 16 14 12 20 20 H 1.09000 * 109.47313 * 89.99733 * 1 2 3 21 21 H 1.08993 * 109.47365 * 210.00124 * 1 2 3 22 22 H 1.09000 * 109.46664 * 329.99962 * 1 2 3 23 23 H 1.08005 * 119.84400 * 359.95454 * 3 2 1 24 24 H 1.08002 * 119.79779 * 179.97438 * 4 3 2 25 25 H 1.08003 * 119.94852 * 179.74978 * 5 4 3 26 26 H 0.96699 * 114.00607 * 270.23917 * 7 6 5 27 27 H 0.97001 * 120.00255 * 359.97438 * 11 9 8 28 28 H 0.97006 * 120.00215 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1929 0.0000 4 6 3.5823 1.1990 0.0005 5 6 4.2865 0.0108 -0.0043 6 6 3.6090 -1.1987 0.0011 7 8 4.2994 -2.3665 0.0020 8 6 2.2066 -1.2095 0.0005 9 6 1.4749 -2.4894 0.0003 10 8 1.1738 -3.0175 -1.0531 11 7 1.1398 -3.0743 1.1673 12 6 0.4607 -4.2631 1.1670 13 1 0.1933 -4.7321 0.2317 14 6 0.1154 -4.8667 2.3709 15 7 0.4403 -4.2960 3.5088 16 14 -0.8116 -6.4884 2.3705 17 1 0.1583 -7.6129 2.3707 18 1 -1.6653 -6.5708 3.5828 19 1 -1.6647 -6.5706 1.1577 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.6555 2.1272 -0.0007 24 1 4.1149 2.1386 0.0001 25 1 5.3664 0.0241 -0.0079 26 1 4.5000 -2.7057 -0.8811 27 1 1.3802 -2.6533 2.0074 28 1 0.1997 -4.7173 4.3488 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606261788.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:38 Heat of formation + Delta-G solvation = -88.102857 kcal Electronic energy + Delta-G solvation = -14664.777548 eV Core-core repulsion = 12065.489256 eV Total energy + Delta-G solvation = -2599.288292 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.24922 -39.34070 -37.83554 -36.04801 -33.65771 -33.14688 -31.09784 -28.09993 -27.09389 -24.30826 -22.66787 -21.17404 -20.07717 -19.00518 -18.21677 -17.12155 -16.90090 -16.31960 -16.02681 -15.58098 -14.83222 -14.65849 -14.48564 -14.23989 -13.60362 -13.57387 -12.97265 -12.77944 -12.67241 -12.49810 -12.47648 -12.14273 -11.65994 -11.56341 -10.54040 -10.11719 -9.71451 -9.53181 -8.53184 -6.03671 0.17163 0.31114 1.33981 1.38538 1.52854 1.91161 2.25984 2.60143 3.13429 3.17628 3.26187 3.89137 4.04223 4.19218 4.38015 4.43289 4.65964 4.69993 4.80885 4.91172 5.20312 5.32557 5.39750 5.42729 5.56024 5.88018 5.94497 6.47007 6.74447 7.01224 7.43230 7.96811 8.64360 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.039013 B = 0.008204 C = 0.007714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.532235 B = 3411.986723 C = 3628.964880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.058 4.058 3 C -0.126 4.126 4 C -0.081 4.081 5 C -0.152 4.152 6 C 0.114 3.886 7 O -0.510 6.510 8 C -0.164 4.164 9 C 0.492 3.508 10 O -0.638 6.638 11 N -0.550 5.550 12 C -0.342 4.342 13 H 0.082 0.918 14 C -0.010 4.010 15 N -0.917 5.917 16 Si 1.000 3.000 17 H -0.269 1.269 18 H -0.267 1.267 19 H -0.269 1.269 20 H 0.075 0.925 21 H 0.035 0.965 22 H 0.103 0.897 23 H 0.165 0.835 24 H 0.174 0.826 25 H 0.157 0.843 26 H 0.403 0.597 27 H 0.392 0.608 28 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.083 11.707 -3.423 13.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.059 4.059 3 C -0.144 4.144 4 C -0.099 4.099 5 C -0.170 4.170 6 C 0.068 3.932 7 O -0.323 6.323 8 C -0.168 4.168 9 C 0.280 3.720 10 O -0.528 6.528 11 N -0.183 5.183 12 C -0.471 4.471 13 H 0.100 0.900 14 C -0.211 4.211 15 N -0.557 5.557 16 Si 0.822 3.178 17 H -0.195 1.195 18 H -0.191 1.191 19 H -0.194 1.194 20 H 0.093 0.907 21 H 0.054 0.946 22 H 0.122 0.878 23 H 0.182 0.818 24 H 0.191 0.809 25 H 0.174 0.826 26 H 0.261 0.739 27 H 0.225 0.775 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.806 11.335 -3.278 12.740 hybrid contribution -0.293 -1.164 -0.007 1.201 sum 4.513 10.170 -3.285 11.601 Atomic orbital electron populations 1.20853 0.90688 1.03024 1.02797 1.20133 0.96686 0.91732 0.97305 1.21354 0.94971 0.97095 1.00987 1.21583 0.93741 0.98647 0.95925 1.21615 1.01719 0.90647 1.03040 1.18847 0.87876 0.86874 0.99555 1.84695 1.74895 1.37813 1.34867 1.20463 0.94502 0.93884 1.07955 1.18173 0.83778 0.86301 0.83791 1.90559 1.61708 1.67880 1.32605 1.41888 1.48954 1.20520 1.06958 1.19741 1.33757 0.99185 0.94424 0.89982 1.26200 0.98065 1.03112 0.93690 1.69688 1.46638 1.41183 0.98202 0.84843 0.78025 0.76673 0.78244 1.19458 1.19111 1.19383 0.90653 0.94571 0.87791 0.81769 0.80875 0.82557 0.73860 0.77462 0.90977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.90 9.62 71.24 0.69 -3.22 15 2 C -0.06 -2.00 5.91 -19.60 -0.12 -2.11 15 3 C -0.13 -3.10 9.68 22.24 0.22 -2.89 15 4 C -0.08 -1.74 10.03 22.31 0.22 -1.52 15 5 C -0.15 -4.04 9.98 22.34 0.22 -3.81 15 6 C 0.11 4.20 6.72 22.85 0.15 4.35 15 7 O -0.51 -19.34 12.95 -89.79 -1.16 -20.50 15 8 C -0.16 -7.01 5.64 -20.01 -0.11 -7.12 15 9 C 0.49 26.37 5.20 86.67 0.45 26.82 15 10 O -0.64 -38.67 16.68 -4.10 -0.07 -38.74 15 11 N -0.55 -31.23 5.28 -309.99 -1.64 -32.86 15 12 C -0.34 -20.49 9.68 84.09 0.81 -19.68 15 13 H 0.08 5.17 7.15 -2.91 -0.02 5.15 15 14 C -0.01 -0.57 5.50 84.95 0.47 -0.10 15 15 N -0.92 -51.77 13.05 21.68 0.28 -51.49 15 16 Si 1.00 43.96 29.55 68.60 2.03 45.99 15 17 H -0.27 -11.48 7.11 99.48 0.71 -10.77 15 18 H -0.27 -10.96 7.11 99.48 0.71 -10.26 15 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 20 H 0.07 2.42 8.14 -2.39 -0.02 2.40 15 21 H 0.04 1.48 7.08 -2.39 -0.02 1.47 15 22 H 0.10 2.58 8.09 -2.39 -0.02 2.56 15 23 H 0.16 2.71 8.06 -2.91 -0.02 2.68 15 24 H 0.17 2.09 8.06 -2.91 -0.02 2.07 15 25 H 0.16 3.19 8.06 -2.91 -0.02 3.16 15 26 H 0.40 12.02 9.06 -74.06 -0.67 11.35 15 27 H 0.39 22.06 7.88 -92.71 -0.73 21.33 15 28 H 0.28 14.65 8.31 -92.70 -0.77 13.88 15 Total: -1.00 -75.19 256.68 2.25 -72.94 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: -0.20 Total: 33.94 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 3.00 Total: -9.28 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -1.35 Total: -84.35 kcal Atomic # 8 Polarization: -58.01 SS G_CDS: -1.23 Total: -59.24 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -75.19 2.25 -72.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606261788.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.165 kcal (2) G-P(sol) polarization free energy of solvation -75.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds