Wall clock time and date at job start Mon Mar 30 2020 03:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31366 * 1 3 3 Si 1.86803 * 119.99774 * 2 1 4 4 H 1.48503 * 109.47040 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47387 * 300.00116 * 3 2 1 6 6 H 1.48497 * 109.47278 * 60.00176 * 3 2 1 7 7 C 1.39046 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00152 * 179.97438 * 7 2 1 9 9 N 1.36871 * 119.99854 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00183 * 179.97438 * 9 7 2 11 11 O 1.21587 * 119.99938 * 359.97438 * 10 9 7 12 12 C 1.47727 * 120.00081 * 179.97438 * 10 9 7 13 13 C 1.39646 * 120.14993 * 179.97438 * 12 10 9 14 14 C 1.37935 * 119.84644 * 180.02562 * 13 12 10 15 15 C 1.38375 * 120.15243 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.84915 * 179.97438 * 15 14 13 17 17 O 1.42903 * 109.47152 * 90.00518 * 16 15 14 18 18 C 1.38377 * 120.30360 * 0.25481 * 15 14 13 19 19 C 1.37937 * 120.15069 * 359.48978 * 18 15 14 20 20 H 0.96996 * 119.99657 * 359.97438 * 1 2 3 21 21 H 0.97011 * 120.00012 * 359.97438 * 9 7 2 22 22 H 1.07994 * 120.07995 * 0.02562 * 13 12 10 23 23 H 1.08000 * 119.92508 * 179.97438 * 14 13 12 24 24 H 1.08997 * 109.47198 * 330.00196 * 16 15 14 25 25 H 1.09008 * 109.47393 * 209.99913 * 16 15 14 26 26 H 0.96700 * 114.00311 * 180.02562 * 17 16 15 27 27 H 1.08000 * 119.92383 * 179.74273 * 18 15 14 28 28 H 1.08002 * 120.07386 * 180.25574 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.7076 1.3465 -0.0006 5 1 1.8888 2.3965 -1.2125 6 1 1.8889 2.3965 1.2125 7 6 2.0090 -1.2041 -0.0005 8 1 3.0890 -1.2041 -0.0010 9 7 1.3247 -2.3895 -0.0005 10 6 1.9985 -3.5567 -0.0016 11 8 3.2144 -3.5566 -0.0030 12 6 1.2599 -4.8360 -0.0010 13 6 1.9550 -6.0472 -0.0026 14 6 1.2591 -7.2381 -0.0026 15 6 -0.1247 -7.2345 -0.0015 16 6 -0.8782 -8.5396 -0.0021 17 8 -1.1154 -8.9533 1.3450 18 6 -0.8198 -6.0380 -0.0058 19 6 -0.1365 -4.8397 -0.0005 20 1 -0.4849 0.8400 0.0004 21 1 0.3545 -2.3895 0.0002 22 1 3.0350 -6.0515 -0.0039 23 1 1.7953 -8.1755 -0.0043 24 1 -0.2895 -9.2988 -0.5170 25 1 -1.8311 -8.4089 -0.5151 26 1 -1.5970 -9.7884 1.4210 27 1 -1.8998 -6.0423 -0.0091 28 1 -0.6803 -3.9066 0.0004 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701288565.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:27 Heat of formation + Delta-G solvation = -67.204836 kcal Electronic energy + Delta-G solvation = -14052.689358 eV Core-core repulsion = 11454.307272 eV Total energy + Delta-G solvation = -2598.382086 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.37793 -37.75227 -36.34588 -34.09891 -31.81286 -31.06247 -30.43899 -26.56353 -24.72849 -22.20425 -21.75690 -19.41898 -18.20847 -17.51794 -16.68275 -15.57851 -15.18097 -14.72829 -14.20308 -13.98049 -13.60889 -13.43720 -13.10958 -12.99328 -12.34978 -11.91425 -11.63848 -11.17769 -11.01123 -10.74959 -10.39566 -10.30022 -10.13430 -9.65574 -8.60851 -8.51001 -8.41893 -8.08888 -6.57673 -3.90296 1.29910 1.77018 3.11282 3.21167 3.28820 3.60155 4.08069 4.35609 4.59577 4.88310 4.95807 5.03850 5.26913 5.28746 5.37106 5.38387 5.79572 5.89679 6.08109 6.25880 6.36421 6.74822 6.81038 6.94130 7.27876 7.41808 7.51551 7.95310 8.49254 9.04779 9.40908 9.96744 10.59316 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.059541 B = 0.005881 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.154622 B = 4759.973130 C = 5144.798004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.023 3.977 3 Si 0.935 3.065 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.294 4.294 8 H 0.109 0.891 9 N -0.542 5.542 10 C 0.463 3.537 11 O -0.597 6.597 12 C -0.085 4.085 13 C -0.082 4.082 14 C -0.107 4.107 15 C -0.104 4.104 16 C 0.121 3.879 17 O -0.567 6.567 18 C -0.103 4.103 19 C -0.108 4.108 20 H 0.275 0.725 21 H 0.394 0.606 22 H 0.133 0.867 23 H 0.120 0.880 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.375 0.625 27 H 0.121 0.879 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.070 -12.752 -0.885 13.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.180 4.180 3 Si 0.761 3.239 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.424 4.424 8 H 0.127 0.873 9 N -0.176 5.176 10 C 0.251 3.749 11 O -0.485 6.485 12 C -0.089 4.089 13 C -0.102 4.102 14 C -0.125 4.125 15 C -0.104 4.104 16 C 0.043 3.957 17 O -0.373 6.373 18 C -0.121 4.121 19 C -0.127 4.127 20 H 0.085 0.915 21 H 0.229 0.771 22 H 0.151 0.849 23 H 0.138 0.862 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.222 0.778 27 H 0.139 0.861 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.080 -11.966 -0.767 12.666 hybrid contribution -0.616 0.353 -0.150 0.725 sum -4.696 -11.614 -0.917 12.561 Atomic orbital electron populations 1.69599 1.06157 1.28671 1.48450 1.25401 0.95708 1.00139 0.96798 0.85713 0.79807 0.80484 0.77889 1.18948 1.20511 1.20493 1.19910 0.93810 0.82136 1.46535 0.87332 1.41922 1.09536 1.04766 1.61369 1.17761 0.87503 0.83322 0.86291 1.90589 1.13261 1.87034 1.57588 1.20420 0.93422 0.95035 0.99996 1.21203 1.00663 0.90783 0.97536 1.20898 0.93258 0.97860 1.00484 1.19591 0.93775 0.93826 1.03252 1.20968 0.97842 0.93336 0.83504 1.86621 1.79861 1.44063 1.26710 1.20875 0.99495 0.91679 1.00063 1.21416 0.93659 0.98323 0.99330 0.91455 0.77097 0.84928 0.86155 0.92988 0.92947 0.77801 0.86101 0.85349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.81 13.05 55.50 0.72 -23.09 15 2 C 0.02 0.61 5.50 -17.45 -0.10 0.51 15 3 Si 0.93 20.70 29.55 -169.99 -5.02 15.67 15 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 7 C -0.29 -8.26 9.68 -15.00 -0.15 -8.41 15 8 H 0.11 3.18 7.15 -52.49 -0.38 2.80 15 9 N -0.54 -14.26 5.23 -11.87 -0.06 -14.32 15 10 C 0.46 11.85 7.72 -12.38 -0.10 11.76 15 11 O -0.60 -17.15 15.92 5.29 0.08 -17.07 15 12 C -0.09 -1.79 5.87 -104.97 -0.62 -2.40 15 13 C -0.08 -1.54 9.60 -39.17 -0.38 -1.91 15 14 C -0.11 -1.66 9.68 -39.64 -0.38 -2.04 15 15 C -0.10 -1.53 5.52 -104.52 -0.58 -2.11 15 16 C 0.12 1.33 7.16 36.01 0.26 1.59 15 17 O -0.57 -6.53 13.64 -35.23 -0.48 -7.02 15 18 C -0.10 -1.60 9.68 -39.64 -0.38 -1.99 15 19 C -0.11 -1.97 9.54 -39.17 -0.37 -2.34 15 20 H 0.28 6.89 8.31 -40.82 -0.34 6.55 15 21 H 0.39 9.80 5.93 -40.82 -0.24 9.55 15 22 H 0.13 2.48 7.65 -52.49 -0.40 2.08 15 23 H 0.12 1.53 8.06 -52.49 -0.42 1.11 15 24 H 0.05 0.47 8.08 -51.93 -0.42 0.05 15 25 H 0.05 0.48 8.08 -51.92 -0.42 0.06 15 26 H 0.38 2.24 9.12 45.56 0.42 2.65 15 27 H 0.12 1.56 8.06 -52.49 -0.42 1.14 15 28 H 0.13 2.29 6.41 -52.49 -0.34 1.95 15 LS Contribution 255.51 15.07 3.85 3.85 Total: -1.00 -32.70 255.51 -5.46 -38.16 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -1.76 Total: 11.15 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -2.79 Total: -7.35 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.66 Total: -37.41 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.40 Total: -24.08 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -32.70 -5.46 -38.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701288565.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.047 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds