Wall clock time and date at job start Mon Mar 30 2020 03:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31366 * 1 3 3 Si 1.86803 * 119.99774 * 2 1 4 4 H 1.48503 * 109.47040 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47387 * 300.00116 * 3 2 1 6 6 H 1.48497 * 109.47278 * 60.00176 * 3 2 1 7 7 C 1.39046 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00152 * 179.97438 * 7 2 1 9 9 N 1.36871 * 119.99854 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00183 * 179.97438 * 9 7 2 11 11 O 1.21587 * 119.99938 * 359.97438 * 10 9 7 12 12 C 1.47727 * 120.00081 * 179.97438 * 10 9 7 13 13 C 1.39646 * 120.14993 * 179.97438 * 12 10 9 14 14 C 1.37935 * 119.84644 * 180.02562 * 13 12 10 15 15 C 1.38375 * 120.15243 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.84915 * 179.97438 * 15 14 13 17 17 O 1.42903 * 109.47152 * 90.00518 * 16 15 14 18 18 C 1.38377 * 120.30360 * 0.25481 * 15 14 13 19 19 C 1.37937 * 120.15069 * 359.48978 * 18 15 14 20 20 H 0.96996 * 119.99657 * 359.97438 * 1 2 3 21 21 H 0.97011 * 120.00012 * 359.97438 * 9 7 2 22 22 H 1.07994 * 120.07995 * 0.02562 * 13 12 10 23 23 H 1.08000 * 119.92508 * 179.97438 * 14 13 12 24 24 H 1.08997 * 109.47198 * 330.00196 * 16 15 14 25 25 H 1.09008 * 109.47393 * 209.99913 * 16 15 14 26 26 H 0.96700 * 114.00311 * 180.02562 * 17 16 15 27 27 H 1.08000 * 119.92383 * 179.74273 * 18 15 14 28 28 H 1.08002 * 120.07386 * 180.25574 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.7076 1.3465 -0.0006 5 1 1.8888 2.3965 -1.2125 6 1 1.8889 2.3965 1.2125 7 6 2.0090 -1.2041 -0.0005 8 1 3.0890 -1.2041 -0.0010 9 7 1.3247 -2.3895 -0.0005 10 6 1.9985 -3.5567 -0.0016 11 8 3.2144 -3.5566 -0.0030 12 6 1.2599 -4.8360 -0.0010 13 6 1.9550 -6.0472 -0.0026 14 6 1.2591 -7.2381 -0.0026 15 6 -0.1247 -7.2345 -0.0015 16 6 -0.8782 -8.5396 -0.0021 17 8 -1.1154 -8.9533 1.3450 18 6 -0.8198 -6.0380 -0.0058 19 6 -0.1365 -4.8397 -0.0005 20 1 -0.4849 0.8400 0.0004 21 1 0.3545 -2.3895 0.0002 22 1 3.0350 -6.0515 -0.0039 23 1 1.7953 -8.1755 -0.0043 24 1 -0.2895 -9.2988 -0.5170 25 1 -1.8311 -8.4089 -0.5151 26 1 -1.5970 -9.7884 1.4210 27 1 -1.8998 -6.0423 -0.0091 28 1 -0.6803 -3.9066 0.0004 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701288565.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:27 Heat of formation + Delta-G solvation = -92.402041 kcal Electronic energy + Delta-G solvation = -14053.781991 eV Core-core repulsion = 11454.307272 eV Total energy + Delta-G solvation = -2599.474719 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.94440 -39.38158 -37.34974 -36.16401 -33.64515 -32.54318 -31.86245 -28.03513 -26.42346 -23.55673 -23.22106 -21.11405 -20.22695 -18.42194 -18.29718 -17.16071 -16.43054 -16.39620 -15.73632 -15.61024 -15.57603 -14.70871 -14.49597 -14.28189 -13.78293 -13.57940 -13.31406 -12.96077 -12.55443 -12.13566 -12.11116 -12.00005 -11.63998 -10.90187 -10.56713 -10.18015 -9.94232 -9.81490 -8.59697 -6.05036 -0.12102 0.42902 1.36337 1.39272 1.54630 1.99627 2.24149 2.77859 3.06718 3.24823 3.59949 3.84049 4.02515 4.10240 4.24667 4.38685 4.45716 4.59847 4.72398 4.88915 5.06868 5.28629 5.36199 5.47316 5.55002 5.88560 5.96598 6.45529 6.97876 6.99933 7.38109 7.94910 8.57889 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.059541 B = 0.005881 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.154622 B = 4759.973130 C = 5144.798004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.009 4.009 3 Si 1.002 2.998 4 H -0.272 1.272 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.340 4.340 8 H 0.084 0.916 9 N -0.550 5.550 10 C 0.459 3.541 11 O -0.639 6.639 12 C -0.122 4.122 13 C -0.092 4.092 14 C -0.101 4.101 15 C -0.091 4.091 16 C 0.121 3.879 17 O -0.590 6.590 18 C -0.101 4.101 19 C -0.110 4.110 20 H 0.284 0.716 21 H 0.398 0.602 22 H 0.121 0.879 23 H 0.155 0.845 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.401 0.599 27 H 0.154 0.846 28 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.777 -14.530 -0.995 16.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.210 4.210 3 Si 0.824 3.176 4 H -0.196 1.196 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.469 4.469 8 H 0.102 0.898 9 N -0.185 5.185 10 C 0.249 3.751 11 O -0.529 6.529 12 C -0.125 4.125 13 C -0.111 4.111 14 C -0.119 4.119 15 C -0.092 4.092 16 C 0.045 3.955 17 O -0.400 6.400 18 C -0.119 4.119 19 C -0.129 4.129 20 H 0.094 0.906 21 H 0.234 0.766 22 H 0.139 0.861 23 H 0.173 0.827 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.252 0.748 27 H 0.172 0.828 28 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.838 -13.780 -0.875 14.992 hybrid contribution -0.171 0.663 -0.104 0.692 sum -6.009 -13.118 -0.979 14.462 Atomic orbital electron populations 1.69647 1.07065 1.29994 1.48178 1.26233 0.96660 1.02783 0.95374 0.84756 0.77991 0.76169 0.78705 1.19638 1.19052 1.19111 1.19858 0.93115 0.83788 1.50187 0.89847 1.41910 1.09618 1.04741 1.62197 1.18587 0.87360 0.84758 0.84380 1.90528 1.15286 1.88034 1.59093 1.20151 0.94585 0.93317 1.04480 1.21270 1.00424 0.91392 0.98051 1.21249 0.93992 0.97712 0.98956 1.20206 0.93765 0.95702 0.99479 1.21037 0.98993 0.91604 0.83916 1.86535 1.80631 1.46071 1.26771 1.21252 1.01162 0.90746 0.98711 1.21450 0.92460 0.99695 0.99289 0.90642 0.76616 0.86073 0.82737 0.90384 0.90440 0.74846 0.82799 0.85768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.21 13.05 21.68 0.28 -48.93 15 2 C -0.01 -0.49 5.50 84.96 0.47 -0.02 15 3 Si 1.00 42.92 29.55 68.60 2.03 44.95 15 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 15 6 H -0.27 -10.81 7.11 99.48 0.71 -10.11 15 7 C -0.34 -20.07 9.68 84.10 0.81 -19.26 15 8 H 0.08 5.22 7.15 -2.91 -0.02 5.20 15 9 N -0.55 -30.50 5.23 -309.74 -1.62 -32.12 15 10 C 0.46 24.86 7.72 86.75 0.67 25.53 15 11 O -0.64 -39.02 15.92 -3.99 -0.06 -39.08 15 12 C -0.12 -5.26 5.87 -20.09 -0.12 -5.38 15 13 C -0.09 -3.44 9.60 22.54 0.22 -3.22 15 14 C -0.10 -2.87 9.68 22.23 0.22 -2.66 15 15 C -0.09 -2.34 5.52 -19.80 -0.11 -2.45 15 16 C 0.12 2.02 7.16 71.24 0.51 2.53 15 17 O -0.59 -10.79 13.64 -148.98 -2.03 -12.83 15 18 C -0.10 -2.85 9.68 22.23 0.22 -2.64 15 19 C -0.11 -3.97 9.54 22.54 0.22 -3.76 15 20 H 0.28 14.11 8.31 -92.71 -0.77 13.34 15 21 H 0.40 20.76 5.93 -92.70 -0.55 20.21 15 22 H 0.12 4.71 7.65 -2.91 -0.02 4.69 15 23 H 0.16 3.30 8.06 -2.91 -0.02 3.28 15 24 H 0.08 0.95 8.08 -2.39 -0.02 0.93 15 25 H 0.08 0.95 8.08 -2.38 -0.02 0.94 15 26 H 0.40 2.85 9.12 -74.06 -0.68 2.17 15 27 H 0.15 3.33 8.06 -2.91 -0.02 3.30 15 28 H 0.12 4.51 6.41 -2.91 -0.02 4.49 15 Total: -1.00 -73.74 255.51 1.67 -72.08 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: -0.02 Total: 27.27 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 3.10 Total: -11.33 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -1.34 Total: -81.06 kcal Atomic # 8 Polarization: -49.81 SS G_CDS: -2.10 Total: -51.91 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -73.74 1.67 -72.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701288565.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.326 kcal (2) G-P(sol) polarization free energy of solvation -73.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds