Wall clock time and date at job start Mon Mar 30 2020 02:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00091 * 2 1 4 4 H 1.48499 * 109.47222 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46936 * 300.00003 * 3 2 1 6 6 H 1.48506 * 109.46937 * 59.99582 * 3 2 1 7 7 C 1.38818 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99201 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00296 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00095 * 180.02562 * 9 7 2 11 11 H 1.09005 * 110.05078 * 33.59445 * 10 9 7 12 12 C 1.54736 * 109.87319 * 272.28533 * 10 9 7 13 13 S 1.83287 * 102.51780 * 198.21750 * 12 10 9 14 14 O 1.42096 * 109.35407 * 269.81495 * 13 12 10 15 15 O 1.42107 * 109.47465 * 136.65133 * 13 12 10 16 16 C 1.82912 * 97.01853 * 23.21850 * 13 12 10 17 17 C 1.53875 * 110.02956 * 154.99641 * 10 9 7 18 18 H 1.08998 * 109.65263 * 286.19402 * 17 10 9 19 19 O 1.42903 * 109.64600 * 46.62256 * 17 10 9 20 20 H 0.96997 * 120.00037 * 359.97438 * 1 2 3 21 21 H 0.97007 * 119.99667 * 359.97438 * 9 7 2 22 22 H 1.08998 * 110.81027 * 79.96953 * 12 10 9 23 23 H 1.09006 * 110.97998 * 316.54777 * 12 10 9 24 24 H 1.09002 * 110.32102 * 243.21891 * 16 13 12 25 25 H 1.09005 * 110.32021 * 121.02213 * 16 13 12 26 26 H 0.96700 * 114.00311 * 180.27245 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9832 -3.5537 0.5689 12 6 2.3725 -4.0839 -1.4519 13 16 2.7479 -5.8686 -1.2692 14 8 4.1391 -6.0353 -1.0325 15 8 2.1158 -6.5952 -2.3141 16 6 1.8316 -6.1310 0.2920 17 6 1.1865 -4.7680 0.6125 18 1 1.1275 -4.6355 1.6928 19 8 -0.1259 -4.7134 0.0496 20 1 -0.4850 0.8400 0.0004 21 1 0.3555 -2.3881 0.0005 22 1 3.2380 -3.5439 -1.8357 23 1 1.5075 -3.9347 -2.0983 24 1 2.5164 -6.4224 1.0884 25 1 1.0623 -6.8913 0.1561 26 1 -0.7300 -5.3852 0.3943 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709932404.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:41 Heat of formation + Delta-G solvation = -134.249094 kcal Electronic energy + Delta-G solvation = -13692.753407 eV Core-core repulsion = 11091.074921 eV Total energy + Delta-G solvation = -2601.678486 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 221.055 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.37218 -38.03792 -37.02510 -36.25519 -34.16065 -31.88037 -29.79637 -26.57461 -24.58233 -21.73018 -19.91191 -19.38790 -18.51302 -17.72720 -16.93290 -16.52711 -16.30247 -15.75964 -15.58839 -15.17165 -14.64648 -13.96515 -13.65792 -13.26526 -13.07846 -12.99594 -12.88688 -12.60545 -12.41762 -12.09840 -11.96944 -11.74211 -11.48099 -11.05632 -10.78403 -9.07943 -7.97032 -5.26994 -0.83100 1.48119 1.49254 1.58895 1.65986 2.53196 2.67862 3.06996 3.28996 3.35283 3.45020 3.78240 3.89284 4.08549 4.24345 4.47608 4.69340 4.71908 4.85601 5.24811 5.50320 6.23719 6.95571 7.33023 8.05421 8.30875 9.25871 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.047070 B = 0.008516 C = 0.007781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.713593 B = 3287.072416 C = 3597.705001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.071 4.071 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.297 1.297 6 H -0.292 1.292 7 C -0.251 4.251 8 H 0.083 0.917 9 N -0.714 5.714 10 C 0.169 3.831 11 H 0.098 0.902 12 C -0.599 4.599 13 S 2.407 3.593 14 O -0.975 6.975 15 O -0.981 6.981 16 C -0.596 4.596 17 C 0.112 3.888 18 H 0.102 0.898 19 O -0.570 6.570 20 H 0.252 0.748 21 H 0.385 0.615 22 H 0.127 0.873 23 H 0.122 0.878 24 H 0.176 0.824 25 H 0.172 0.828 26 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.860 -12.539 3.015 13.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.264 4.264 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.224 1.224 6 H -0.219 1.219 7 C -0.383 4.383 8 H 0.101 0.899 9 N -0.353 5.353 10 C 0.057 3.943 11 H 0.116 0.884 12 C -0.733 4.733 13 S 2.594 3.406 14 O -0.972 6.972 15 O -0.978 6.978 16 C -0.728 4.728 17 C 0.050 3.950 18 H 0.120 0.880 19 O -0.379 6.379 20 H 0.061 0.939 21 H 0.219 0.781 22 H 0.145 0.855 23 H 0.140 0.860 24 H 0.194 0.806 25 H 0.190 0.810 26 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 3.800 -12.555 2.111 13.286 hybrid contribution -0.780 1.199 0.422 1.491 sum 3.020 -11.356 2.533 12.021 Atomic orbital electron populations 1.69842 1.06684 1.26124 1.58854 1.25586 0.96323 1.01161 1.03326 0.85101 0.78399 0.79820 0.76568 1.18792 1.22408 1.21911 1.19784 0.91808 0.85032 1.41663 0.89894 1.42332 1.06119 0.99709 1.87151 1.21305 0.95787 0.86822 0.90435 0.88447 1.31254 1.11194 1.22276 1.08573 1.08275 0.75214 0.78401 0.78701 1.93542 1.31486 1.85698 1.86473 1.93524 1.78018 1.70693 1.55578 1.31064 1.15637 1.05863 1.20284 1.22383 0.83608 0.89324 0.99640 0.88037 1.86610 1.21873 1.60365 1.69055 0.93936 0.78092 0.85514 0.85986 0.80634 0.81031 0.74982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.93 13.06 21.65 0.28 -57.65 15 2 C -0.07 -3.97 5.50 84.86 0.47 -3.50 15 3 Si 0.97 44.90 29.55 68.60 2.03 46.93 15 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 15 5 H -0.30 -13.90 7.11 99.48 0.71 -13.19 15 6 H -0.29 -13.45 7.11 99.48 0.71 -12.75 15 7 C -0.25 -13.31 9.96 84.04 0.84 -12.48 15 8 H 0.08 4.15 7.83 -2.91 -0.02 4.12 15 9 N -0.71 -33.88 5.12 -318.75 -1.63 -35.51 15 10 C 0.17 5.81 3.01 45.88 0.14 5.95 15 11 H 0.10 3.07 8.09 -2.38 -0.02 3.05 15 12 C -0.60 -19.36 6.83 72.57 0.50 -18.87 15 13 S 2.41 62.87 6.10 -56.49 -0.34 62.53 15 14 O -0.97 -30.63 18.15 -127.47 -2.31 -32.94 15 15 O -0.98 -32.11 18.15 -127.47 -2.31 -34.42 15 16 C -0.60 -10.05 6.96 72.38 0.50 -9.55 15 17 C 0.11 2.76 3.72 31.29 0.12 2.87 15 18 H 0.10 2.21 8.14 -2.39 -0.02 2.19 15 19 O -0.57 -15.45 12.18 -148.98 -1.82 -17.27 15 20 H 0.25 14.65 8.31 -92.71 -0.77 13.88 15 21 H 0.39 20.03 6.98 -92.70 -0.65 19.38 15 22 H 0.13 4.08 8.14 -2.39 -0.02 4.06 15 23 H 0.12 4.34 8.14 -2.38 -0.02 4.32 15 24 H 0.18 1.90 8.14 -2.39 -0.02 1.88 15 25 H 0.17 1.93 8.03 -2.38 -0.02 1.91 15 26 H 0.40 6.17 9.05 -74.06 -0.67 5.50 15 Total: -1.00 -76.53 240.47 -3.66 -80.19 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: -0.11 Total: 23.70 kcal Atomic # 6 Polarization: -38.12 SS G_CDS: 2.56 Total: -35.56 kcal Atomic # 7 Polarization: -91.81 SS G_CDS: -1.35 Total: -93.16 kcal Atomic # 8 Polarization: -78.19 SS G_CDS: -6.44 Total: -84.63 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: 62.87 SS G_CDS: -0.34 Total: 62.53 kcal Total: -76.53 -3.66 -80.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709932404.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.059 kcal (2) G-P(sol) polarization free energy of solvation -76.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds