Wall clock time and date at job start Mon Mar 30 2020 03:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 H 1.08996 * 110.85957 * 62.33325 * 9 7 2 11 11 C 1.54629 * 110.96725 * 298.54781 * 9 7 2 12 12 C 1.51286 * 104.19254 * 217.08269 * 11 9 7 13 13 O 1.21281 * 124.94067 * 196.28946 * 12 11 9 14 14 N 1.34414 * 110.11851 * 16.25194 * 12 11 9 15 15 C 1.46761 * 111.29839 * 0.40933 * 14 12 11 16 16 H 1.09003 * 110.24743 * 101.98155 * 15 14 12 17 17 C 1.50697 * 110.24482 * 223.98209 * 15 14 12 18 18 C 1.34517 * 125.79276 * 215.76394 * 17 15 14 19 19 C 1.41381 * 106.84558 * 179.89021 * 18 17 15 20 20 C 1.34509 * 106.83681 * 0.37014 * 19 18 17 21 21 O 1.34306 * 125.78951 * 36.07085 * 17 15 14 22 22 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 23 23 H 1.09003 * 110.48816 * 335.76176 * 11 9 7 24 24 H 1.08998 * 110.48717 * 98.40873 * 11 9 7 25 25 H 0.97000 * 124.35405 * 180.42320 * 14 12 11 26 26 H 1.08004 * 126.57428 * 0.02562 * 18 17 15 27 27 H 1.07996 * 126.57919 * 180.12336 * 19 18 17 28 28 H 1.08008 * 125.78920 * 179.74820 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6471 -2.5986 -0.9024 11 6 0.3774 -2.6336 1.2681 12 6 0.4676 -4.1006 1.6269 13 8 -0.2845 -4.6783 2.3828 14 7 1.5020 -4.6707 0.9852 15 6 2.2167 -3.6950 0.1539 16 1 3.1342 -3.3774 0.6494 17 6 2.5303 -4.2895 -1.1949 18 6 3.6419 -4.0599 -1.9167 19 6 3.5224 -4.8167 -3.1049 20 6 2.3413 -5.4571 -3.0419 21 8 1.7446 -5.1341 -1.8828 22 1 -0.4850 -0.8401 0.0004 23 1 0.7777 -2.0185 2.0740 24 1 -0.6544 -2.3566 1.0519 25 1 1.7448 -5.6067 1.0616 26 1 4.4682 -3.4217 -1.6404 27 1 4.2399 -4.8674 -3.9105 28 1 1.9404 -6.1186 -3.7958 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709935118.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:15 Heat of formation + Delta-G solvation = -49.432759 kcal Electronic energy + Delta-G solvation = -14915.909920 eV Core-core repulsion = 12318.298489 eV Total energy + Delta-G solvation = -2597.611431 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.52120 -41.24409 -37.90279 -35.25968 -33.92681 -31.67567 -31.32357 -28.05860 -26.16864 -22.87576 -22.63122 -21.62358 -21.35867 -19.26265 -18.71852 -17.59584 -17.08592 -16.86648 -16.13576 -15.62081 -15.25963 -15.08920 -14.30345 -14.05729 -13.69834 -13.65238 -13.50885 -13.23828 -12.64274 -12.39266 -12.03304 -11.84605 -11.28752 -10.80994 -10.65276 -10.46427 -10.36890 -9.33663 -8.57629 -6.35110 0.78661 1.43831 1.62118 1.68847 1.73042 1.84355 2.07956 2.32545 2.61141 3.20525 3.54489 3.72582 3.92178 4.16061 4.24939 4.30524 4.45257 4.57977 4.91939 4.97517 5.06070 5.20425 5.31792 5.61077 5.70559 5.82490 5.98167 6.20356 6.25543 6.59719 7.14699 7.45923 8.80455 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.022166 B = 0.011717 C = 0.008371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.876908 B = 2389.190480 C = 3344.028302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.023 4.023 3 Si 1.117 2.883 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.287 1.287 7 C -0.598 4.598 8 H 0.068 0.932 9 C 0.038 3.962 10 H 0.012 0.988 11 C -0.143 4.143 12 C 0.524 3.476 13 O -0.583 6.583 14 N -0.710 5.710 15 C 0.228 3.772 16 H 0.121 0.879 17 C -0.034 4.034 18 C -0.202 4.202 19 C -0.218 4.218 20 C -0.050 4.050 21 O -0.195 6.195 22 H 0.262 0.738 23 H 0.095 0.905 24 H 0.073 0.927 25 H 0.414 0.586 26 H 0.159 0.841 27 H 0.176 0.824 28 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.815 -7.519 -5.249 12.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.223 4.223 3 Si 0.940 3.060 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.213 1.213 7 C -0.636 4.636 8 H 0.086 0.914 9 C 0.019 3.981 10 H 0.030 0.970 11 C -0.184 4.184 12 C 0.312 3.688 13 O -0.464 6.464 14 N -0.364 5.364 15 C 0.124 3.876 16 H 0.138 0.862 17 C -0.085 4.085 18 C -0.221 4.221 19 C -0.237 4.237 20 C -0.116 4.116 21 O -0.091 6.091 22 H 0.073 0.927 23 H 0.113 0.887 24 H 0.091 0.909 25 H 0.254 0.746 26 H 0.176 0.824 27 H 0.194 0.806 28 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 7.938 -6.179 -4.766 11.131 hybrid contribution 0.003 -1.945 -0.136 1.950 sum 7.941 -8.124 -4.902 12.372 Atomic orbital electron populations 1.70870 1.08078 1.30709 1.47581 1.27137 0.96423 1.06239 0.92497 0.82908 0.74725 0.71369 0.76994 1.18792 1.21044 1.21294 1.22129 0.94807 0.90876 1.55791 0.91377 1.19777 0.92654 0.93568 0.92114 0.97021 1.22585 1.02291 0.91795 1.01723 1.21259 0.78980 0.90577 0.78004 1.90633 1.45926 1.70943 1.38927 1.46153 1.30753 1.12824 1.46644 1.20410 0.97325 0.86922 0.82973 0.86151 1.22579 0.91884 0.97313 0.96679 1.21851 0.99692 1.04299 0.96279 1.22155 0.99902 1.01349 1.00302 1.24869 0.94545 1.03999 0.88212 1.84016 1.44718 1.51579 1.28832 0.92650 0.88703 0.90864 0.74573 0.82373 0.80643 0.74577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.56 13.43 21.45 0.29 -53.27 15 2 C -0.02 -1.22 5.34 84.65 0.45 -0.77 15 3 Si 1.12 46.44 29.90 68.60 2.05 48.49 15 4 H -0.26 -9.83 7.11 99.48 0.71 -9.13 15 5 H -0.28 -11.69 7.11 99.48 0.71 -10.99 15 6 H -0.29 -11.87 7.11 99.48 0.71 -11.16 15 7 C -0.60 -29.74 8.43 25.60 0.22 -29.53 15 8 H 0.07 3.21 7.66 -2.91 -0.02 3.19 15 9 C 0.04 1.76 2.20 -10.48 -0.02 1.74 15 10 H 0.01 0.61 7.86 -2.39 -0.02 0.59 15 11 C -0.14 -6.61 5.32 30.59 0.16 -6.45 15 12 C 0.52 22.69 8.43 87.90 0.74 23.43 15 13 O -0.58 -28.17 18.03 -3.03 -0.05 -28.22 15 14 N -0.71 -25.77 5.85 -442.98 -2.59 -28.36 15 15 C 0.23 8.56 3.52 44.70 0.16 8.72 15 16 H 0.12 4.20 7.78 -2.39 -0.02 4.18 15 17 C -0.03 -1.19 6.13 24.83 0.15 -1.04 15 18 C -0.20 -6.19 10.81 22.19 0.24 -5.95 15 19 C -0.22 -5.51 10.91 22.19 0.24 -5.27 15 20 C -0.05 -1.25 12.09 66.97 0.81 -0.45 15 21 O -0.19 -6.61 10.63 -2.56 -0.03 -6.63 15 22 H 0.26 15.15 5.50 -92.71 -0.51 14.64 15 23 H 0.09 4.49 7.89 -2.39 -0.02 4.47 15 24 H 0.07 3.59 6.88 -2.39 -0.02 3.58 15 25 H 0.41 12.86 8.96 -92.71 -0.83 12.03 15 26 H 0.16 4.40 8.06 -2.91 -0.02 4.38 15 27 H 0.18 3.21 8.06 -2.91 -0.02 3.19 15 28 H 0.24 3.67 8.06 -2.91 -0.02 3.64 15 Total: -1.00 -64.37 249.03 3.43 -60.94 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.61 Total: 22.62 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: 3.15 Total: -15.57 kcal Atomic # 7 Polarization: -79.32 SS G_CDS: -2.30 Total: -81.62 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -0.08 Total: -34.86 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.05 Total: 48.49 kcal Total: -64.37 3.43 -60.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709935118.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.510 kcal (2) G-P(sol) polarization free energy of solvation -64.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds