Wall clock time and date at job start Mon Mar 30 2020 03:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08999 * 110.85551 * 55.93087 * 9 7 2 11 11 C 1.54627 * 110.96675 * 292.09751 * 9 7 2 12 12 C 1.51281 * 104.19446 * 217.08440 * 11 9 7 13 13 O 1.21286 * 124.93959 * 196.25694 * 12 11 9 14 14 N 1.34421 * 110.11533 * 16.25217 * 12 11 9 15 15 C 1.46758 * 111.30160 * 0.40719 * 14 12 11 16 16 H 1.08995 * 110.24740 * 223.98203 * 15 14 12 17 17 C 1.50701 * 110.24569 * 101.98002 * 15 14 12 18 18 C 1.34512 * 125.79089 * 143.94940 * 17 15 14 19 19 C 1.41383 * 106.84225 * 180.02562 * 18 17 15 20 20 C 1.34512 * 106.84092 * 359.97438 * 19 18 17 21 21 O 1.34301 * 108.41940 * 359.74100 * 20 19 18 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09002 * 110.48865 * 335.76401 * 11 9 7 24 24 H 1.09009 * 110.48327 * 98.40911 * 11 9 7 25 25 H 0.96997 * 124.34658 * 180.43111 * 14 12 11 26 26 H 1.07997 * 126.57834 * 0.04369 * 18 17 15 27 27 H 1.08003 * 126.57992 * 180.02562 * 19 18 17 28 28 H 1.08003 * 125.79280 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.5664 -2.5482 -0.8521 11 6 0.4981 -2.7095 1.3288 12 6 0.6174 -4.1944 1.5921 13 8 -0.0625 -4.8170 2.3802 14 7 1.5866 -4.7234 0.8254 15 6 2.2237 -3.6993 -0.0107 16 1 2.3580 -4.0714 -1.0263 17 6 3.5512 -3.2970 0.5783 18 6 4.6565 -2.9773 -0.1185 19 6 5.6611 -2.6671 0.8267 20 6 5.1096 -2.8152 2.0445 21 8 3.8298 -3.1910 1.8879 22 1 -0.4850 0.8401 -0.0004 23 1 0.9729 -2.1409 2.1285 24 1 -0.5486 -2.4232 1.2254 25 1 1.8329 -5.6616 0.8246 26 1 4.7570 -2.9605 -1.1937 27 1 6.6764 -2.3677 0.6120 28 1 5.6096 -2.6544 2.9882 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709935120.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:20 Heat of formation + Delta-G solvation = -42.157869 kcal Electronic energy + Delta-G solvation = -15204.630838 eV Core-core repulsion = 12607.334870 eV Total energy + Delta-G solvation = -2597.295968 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.37038 -41.01675 -37.69993 -34.86163 -33.74403 -31.88741 -31.01952 -27.87759 -26.49219 -22.68386 -22.44490 -21.53859 -20.94923 -19.00471 -18.17554 -17.80082 -16.78551 -16.48587 -16.29993 -15.88669 -14.86152 -14.69566 -14.35740 -14.16035 -13.52660 -13.49152 -13.20252 -12.91620 -12.75457 -12.59120 -12.22049 -11.50576 -11.37929 -10.82451 -10.54173 -10.43367 -10.25414 -9.07797 -8.13779 -6.20966 1.03470 1.45380 1.47047 1.53273 1.58846 1.90925 2.32707 2.45672 2.51956 3.21075 3.74557 3.99589 4.10056 4.32309 4.41640 4.48690 4.66000 4.83667 5.08425 5.18935 5.33536 5.40358 5.58381 5.78009 5.84891 5.90341 6.00294 6.25267 6.47389 6.87248 7.31109 7.48039 8.96432 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.021309 B = 0.014887 C = 0.009920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.687320 B = 1880.330354 C = 2822.000092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.021 3.979 3 Si 0.945 3.055 4 H -0.266 1.266 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.518 4.518 8 H 0.077 0.923 9 C 0.049 3.951 10 H 0.045 0.955 11 C -0.127 4.127 12 C 0.521 3.479 13 O -0.590 6.590 14 N -0.709 5.709 15 C 0.212 3.788 16 H 0.138 0.862 17 C 0.007 3.993 18 C -0.221 4.221 19 C -0.218 4.218 20 C -0.066 4.066 21 O -0.193 6.193 22 H 0.261 0.739 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.415 0.585 26 H 0.159 0.841 27 H 0.168 0.832 28 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.148 -4.761 -1.339 11.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.179 4.179 3 Si 0.772 3.228 4 H -0.191 1.191 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.556 4.556 8 H 0.095 0.905 9 C 0.030 3.970 10 H 0.063 0.937 11 C -0.168 4.168 12 C 0.310 3.690 13 O -0.472 6.472 14 N -0.362 5.362 15 C 0.107 3.893 16 H 0.156 0.844 17 C -0.044 4.044 18 C -0.240 4.240 19 C -0.237 4.237 20 C -0.133 4.133 21 O -0.089 6.089 22 H 0.070 0.930 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.255 0.745 26 H 0.177 0.823 27 H 0.186 0.814 28 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 9.405 -4.905 -0.724 10.632 hybrid contribution 0.349 0.850 0.061 0.921 sum 9.754 -4.055 -0.663 10.584 Atomic orbital electron populations 1.70053 1.07166 1.27519 1.50852 1.25633 0.95388 1.02097 0.94748 0.85791 0.78464 0.79692 0.78851 1.19068 1.21574 1.20355 1.21422 0.93836 0.89868 1.50508 0.90498 1.19663 0.92364 0.92156 0.92815 0.93725 1.22275 1.02635 0.90100 1.01762 1.21485 0.78240 0.91334 0.77924 1.90612 1.48986 1.69141 1.38466 1.46104 1.36072 1.11454 1.42619 1.20564 0.86265 0.88943 0.93513 0.84427 1.22624 0.97093 1.03935 0.80789 1.21701 0.92693 1.08208 1.01411 1.22053 1.01818 1.07689 0.92123 1.24619 0.81842 1.05135 1.01723 1.84015 1.29593 1.67745 1.27557 0.92960 0.90821 0.90828 0.74465 0.82302 0.81429 0.75801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.24 12.84 21.45 0.28 -49.96 15 2 C 0.02 1.10 5.37 84.66 0.46 1.55 15 3 Si 0.95 41.53 29.54 68.60 2.03 43.55 15 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 15 5 H -0.29 -12.77 7.11 99.48 0.71 -12.06 15 6 H -0.28 -12.18 7.11 99.48 0.71 -11.47 15 7 C -0.52 -25.41 7.84 25.60 0.20 -25.21 15 8 H 0.08 3.68 5.22 -2.91 -0.02 3.66 15 9 C 0.05 2.19 2.87 -10.48 -0.03 2.16 15 10 H 0.04 2.12 8.14 -2.39 -0.02 2.10 15 11 C -0.13 -5.96 5.82 30.59 0.18 -5.78 15 12 C 0.52 22.68 8.43 87.90 0.74 23.42 15 13 O -0.59 -28.89 18.03 -3.05 -0.05 -28.94 15 14 N -0.71 -24.74 5.85 -442.98 -2.59 -27.33 15 15 C 0.21 7.50 3.90 44.70 0.17 7.67 15 16 H 0.14 3.92 8.14 -2.39 -0.02 3.90 15 17 C 0.01 0.26 4.43 24.83 0.11 0.37 15 18 C -0.22 -7.00 9.65 22.19 0.21 -6.78 15 19 C -0.22 -6.19 10.91 22.19 0.24 -5.95 15 20 C -0.07 -1.97 12.09 66.97 0.81 -1.16 15 21 O -0.19 -7.21 10.63 -2.49 -0.03 -7.24 15 22 H 0.26 13.87 8.31 -92.70 -0.77 13.10 15 23 H 0.07 3.72 7.89 -2.39 -0.02 3.70 15 24 H 0.07 3.71 8.14 -2.38 -0.02 3.69 15 25 H 0.42 11.89 8.96 -92.71 -0.83 11.06 15 26 H 0.16 4.38 8.06 -2.91 -0.02 4.35 15 27 H 0.17 3.66 8.06 -2.91 -0.02 3.64 15 28 H 0.23 4.70 8.06 -2.91 -0.02 4.67 15 Total: -1.00 -62.84 248.50 3.08 -59.76 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.36 Total: 19.88 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 3.09 Total: -9.72 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -2.32 Total: -77.29 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -0.08 Total: -36.18 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.55 kcal Total: -62.84 3.08 -59.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709935120.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.604 kcal (2) G-P(sol) polarization free energy of solvation -62.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds