Wall clock time and date at job start Mon Mar 30 2020 02:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48498 * 109.47136 * 269.99947 * 3 2 1 5 5 H 1.48503 * 109.47098 * 30.00013 * 3 2 1 6 6 H 1.48496 * 109.47087 * 149.99669 * 3 2 1 7 7 C 1.38806 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99681 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00545 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00396 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46998 * 180.02562 * 10 9 7 12 12 H 1.09002 * 115.55153 * 29.41745 * 11 10 9 13 13 C 1.53002 * 117.49643 * 175.08507 * 11 10 9 14 14 H 1.09006 * 117.49821 * 359.97438 * 13 11 10 15 15 C 1.50694 * 117.49823 * 214.97790 * 13 11 10 16 16 O 1.20827 * 120.00247 * 0.02562 * 15 13 11 17 17 O 1.34232 * 119.99877 * 180.02562 * 15 13 11 18 18 C 1.53003 * 117.49663 * 243.74539 * 11 10 9 19 19 F 1.39893 * 117.49825 * 0.02562 * 18 11 10 20 20 F 1.39900 * 117.49924 * 145.02419 * 18 11 10 21 21 H 0.97001 * 119.99731 * 359.97438 * 1 2 3 22 22 H 0.97010 * 119.99695 * 0.02562 * 9 7 2 23 23 H 1.08993 * 109.47452 * 60.00465 * 10 9 7 24 24 H 1.09000 * 109.47175 * 300.00255 * 10 9 7 25 25 H 0.96699 * 116.99973 * 180.02562 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.1074 -4.6203 -0.4845 13 6 1.6326 -6.2353 -0.1176 14 1 2.7151 -6.3381 -0.1941 15 6 0.8273 -7.2473 -0.8911 16 8 -0.2249 -6.9272 -1.3915 17 8 1.2790 -8.5043 -1.0242 18 6 1.0606 -5.7470 1.2158 19 9 1.9666 -5.4664 2.2441 20 9 -0.1696 -6.2745 1.6227 21 1 -0.4850 0.8401 0.0004 22 1 0.3555 -2.3880 -0.0005 23 1 2.6847 -3.7146 0.8894 24 1 2.6848 -3.7145 -0.8905 25 1 0.7279 -9.1176 -1.5295 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715370778.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:55 Heat of formation + Delta-G solvation = -168.456167 kcal Electronic energy + Delta-G solvation = -14858.800521 eV Core-core repulsion = 11701.798318 eV Total energy + Delta-G solvation = -3157.002203 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.065 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.93206 -48.60252 -41.49812 -38.36589 -37.15295 -35.85599 -32.91406 -28.47230 -26.24779 -24.65688 -22.55228 -21.78668 -19.60880 -19.29503 -18.84097 -18.21324 -17.29308 -17.09923 -16.63644 -16.18261 -15.42242 -15.29869 -15.13639 -14.87374 -14.58902 -14.39448 -14.09374 -13.12031 -12.84480 -12.75947 -12.72230 -12.30358 -12.10042 -11.98126 -11.76977 -11.25740 -10.89266 -9.04957 -7.95517 -5.26610 0.59342 1.49924 1.52157 1.59363 1.61445 1.87308 1.99864 2.55518 2.85750 3.28097 3.36709 3.40553 4.01033 4.05928 4.26953 4.42288 4.45601 4.91980 5.03449 5.42931 5.50488 6.24967 6.82873 7.31921 8.02378 8.25633 9.28215 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.045925 B = 0.006492 C = 0.006281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.539575 B = 4311.885725 C = 4456.733422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.075 4.075 3 Si 0.978 3.022 4 H -0.286 1.286 5 H -0.298 1.298 6 H -0.266 1.266 7 C -0.248 4.248 8 H 0.085 0.915 9 N -0.747 5.747 10 C 0.178 3.822 11 C -0.118 4.118 12 H 0.130 0.870 13 C -0.136 4.136 14 H 0.199 0.801 15 C 0.519 3.481 16 O -0.530 6.530 17 O -0.493 6.493 18 C 0.223 3.777 19 F -0.148 7.148 20 F -0.163 7.163 21 H 0.252 0.748 22 H 0.374 0.626 23 H 0.046 0.954 24 H 0.058 0.942 25 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.225 -16.529 -0.699 17.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.806 3.194 4 H -0.213 1.213 5 H -0.224 1.224 6 H -0.191 1.191 7 C -0.380 4.380 8 H 0.103 0.897 9 N -0.391 5.391 10 C 0.051 3.949 11 C -0.138 4.138 12 H 0.148 0.852 13 C -0.156 4.156 14 H 0.216 0.784 15 C 0.361 3.639 16 O -0.419 6.419 17 O -0.308 6.308 18 C 0.186 3.814 19 F -0.128 7.128 20 F -0.144 7.144 21 H 0.061 0.939 22 H 0.206 0.794 23 H 0.064 0.936 24 H 0.076 0.924 25 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges 5.336 -16.112 -0.559 16.982 hybrid contribution -0.777 0.505 -0.055 0.929 sum 4.558 -15.607 -0.614 16.270 Atomic orbital electron populations 1.69834 1.06831 1.26252 1.59201 1.25637 0.96385 1.01382 1.03346 0.85079 0.77726 0.79078 0.77478 1.21251 1.22447 1.19062 1.19662 0.91842 0.84817 1.41634 0.89719 1.42533 1.05725 1.01006 1.89795 1.20403 0.91941 0.82067 1.00443 1.23911 1.03644 0.90978 0.95262 0.85212 1.23394 1.04799 0.93276 0.94109 0.78411 1.21699 0.82766 0.82370 0.77026 1.90784 1.24266 1.80304 1.46593 1.84424 1.54871 1.20581 1.70890 1.19918 0.77325 1.03466 0.80708 1.93047 1.65322 1.93602 1.60805 1.93037 1.42334 1.86930 1.92053 0.93937 0.79377 0.93613 0.92409 0.69970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.67 13.06 21.65 0.28 -59.38 15 2 C -0.08 -4.29 5.50 84.86 0.47 -3.82 15 3 Si 0.98 45.59 29.55 68.60 2.03 47.61 15 4 H -0.29 -13.04 7.11 99.48 0.71 -12.33 15 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 15 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 15 7 C -0.25 -13.59 9.99 84.03 0.84 -12.75 15 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 15 9 N -0.75 -37.46 5.60 -343.46 -1.92 -39.39 15 10 C 0.18 6.59 6.52 86.38 0.56 7.15 15 11 C -0.12 -3.76 5.34 -10.79 -0.06 -3.82 15 12 H 0.13 4.63 7.57 -2.39 -0.02 4.61 15 13 C -0.14 -3.16 6.01 -11.51 -0.07 -3.23 15 14 H 0.20 3.11 8.14 -2.38 -0.02 3.09 15 15 C 0.52 12.11 7.75 71.23 0.55 12.66 15 16 O -0.53 -16.33 17.02 21.96 0.37 -15.96 15 17 O -0.49 -7.46 13.42 -51.43 -0.69 -8.15 15 18 C 0.22 6.57 5.14 30.62 0.16 6.73 15 19 F -0.15 -4.48 16.48 44.97 0.74 -3.74 15 20 F -0.16 -5.25 17.13 44.97 0.77 -4.48 15 21 H 0.25 15.00 8.31 -92.71 -0.77 14.23 15 22 H 0.37 20.29 7.60 -92.70 -0.70 19.59 15 23 H 0.05 1.67 7.06 -2.39 -0.02 1.65 15 24 H 0.06 1.98 8.14 -2.39 -0.02 1.96 15 25 H 0.44 2.58 9.10 -74.06 -0.67 1.91 15 Total: -1.00 -69.73 243.58 3.91 -65.82 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -0.12 Total: 14.75 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 2.45 Total: 2.92 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -1.64 Total: -98.77 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.32 Total: -24.12 kcal Atomic # 9 Polarization: -9.73 SS G_CDS: 1.51 Total: -8.22 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -69.73 3.91 -65.82 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715370778.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.632 kcal (2) G-P(sol) polarization free energy of solvation -69.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds