Wall clock time and date at job start Mon Mar 30 2020 02:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 119.99712 * 2 1 4 4 O 1.21513 * 120.00561 * 0.02562 * 3 2 1 5 5 O 1.34705 * 119.99793 * 180.02562 * 3 2 1 6 6 C 1.35735 * 117.00060 * 175.25376 * 5 3 2 7 7 C 1.39284 * 119.81389 * 264.35717 * 6 5 3 8 8 C 1.36450 * 120.18709 * 179.75944 * 7 6 5 9 9 C 1.40827 * 119.80891 * 0.51325 * 8 7 6 10 10 C 1.41222 * 120.18120 * 179.72007 * 9 8 7 11 11 H 1.08004 * 119.99796 * 204.89531 * 10 9 8 12 12 C 1.39904 * 119.99974 * 24.89499 * 10 9 8 13 13 N 1.30863 * 120.00468 * 17.38124 * 12 10 9 14 14 Si 1.86799 * 119.99867 * 197.38329 * 12 10 9 15 15 H 1.48501 * 109.47180 * 59.99919 * 14 12 10 16 16 H 1.48506 * 109.47046 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47335 * 299.99924 * 14 12 10 18 18 C 1.40829 * 119.63522 * 359.74334 * 9 8 7 19 19 C 1.36445 * 119.81083 * 359.97438 * 18 9 8 20 20 H 1.09006 * 109.46708 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47284 * 300.00082 * 1 2 3 22 22 H 1.08994 * 109.46744 * 60.00219 * 1 2 3 23 23 H 0.96996 * 120.00058 * 179.97438 * 2 1 3 24 24 H 1.08002 * 119.90279 * 0.02562 * 7 6 5 25 25 H 1.07999 * 120.09568 * 180.23719 * 8 7 6 26 26 H 0.96996 * 120.00554 * 179.97438 * 13 12 10 27 27 H 1.08002 * 120.09450 * 179.97438 * 18 9 8 28 28 H 1.08002 * 119.90759 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5313 2.2196 0.0005 5 8 3.4859 1.1672 -0.0005 6 6 4.1021 2.3725 -0.1006 7 6 4.5218 2.8344 -1.3457 8 6 5.1376 4.0471 -1.4557 9 6 5.3580 4.8274 -0.3043 10 6 5.9999 6.0810 -0.4083 11 1 6.5239 6.4915 0.4422 12 6 5.9571 6.7909 -1.6131 13 7 5.0662 6.4852 -2.5215 14 14 7.1718 8.1753 -1.9250 15 1 8.5562 7.6404 -1.8728 16 1 6.9190 8.7632 -3.2651 17 1 7.0064 9.2227 -0.8853 18 6 4.9353 4.3504 0.9515 19 6 4.3158 3.1382 1.0432 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3632 0.5138 -0.8900 23 1 1.9500 -0.8400 0.0004 24 1 4.3556 2.2329 -2.2272 25 1 5.4591 4.4055 -2.4225 26 1 5.0362 6.9777 -3.3566 27 1 5.1009 4.9425 1.8395 28 1 3.9913 2.7707 2.0056 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002019452.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:02 Heat of formation + Delta-G solvation = -77.265795 kcal Electronic energy + Delta-G solvation = -14349.352741 eV Core-core repulsion = 11750.534379 eV Total energy + Delta-G solvation = -2598.818362 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.85274 -39.46186 -37.81061 -35.74530 -35.37091 -31.69492 -31.23151 -28.28361 -26.71275 -23.58474 -23.09091 -21.91010 -20.09418 -19.37966 -18.43123 -17.50328 -17.01866 -16.27132 -15.83574 -15.54049 -15.33224 -14.58771 -14.20876 -14.09006 -13.83424 -13.23512 -13.06403 -12.87726 -12.77327 -12.56600 -12.11988 -11.83855 -11.72684 -11.21601 -11.04435 -10.28704 -9.64046 -9.34803 -8.74131 -6.44318 0.51495 1.02249 1.36841 1.41476 1.52857 1.67626 1.79987 2.18295 2.63183 3.49009 3.71688 4.25032 4.29577 4.42270 4.59622 4.81645 4.90639 5.01478 5.05964 5.20940 5.26996 5.41197 5.52995 5.87347 5.93858 6.03384 6.21685 6.42892 6.53953 6.78972 6.85949 7.48286 8.22222 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.064716 B = 0.006277 C = 0.006080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.559065 B = 4459.498388 C = 4604.474998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.697 5.697 3 C 0.613 3.387 4 O -0.606 6.606 5 O -0.291 6.291 6 C -0.061 4.061 7 C -0.096 4.096 8 C -0.179 4.179 9 C 0.087 3.913 10 C -0.480 4.480 11 H 0.089 0.911 12 C 0.032 3.968 13 N -0.815 5.815 14 Si 0.992 3.008 15 H -0.256 1.256 16 H -0.267 1.267 17 H -0.257 1.257 18 C -0.231 4.231 19 C -0.079 4.079 20 H 0.132 0.868 21 H 0.052 0.948 22 H 0.049 0.951 23 H 0.423 0.577 24 H 0.109 0.891 25 H 0.115 0.885 26 H 0.294 0.706 27 H 0.114 0.886 28 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.075 -8.665 1.341 9.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.358 5.358 3 C 0.368 3.632 4 O -0.496 6.496 5 O -0.202 6.202 6 C -0.104 4.104 7 C -0.115 4.115 8 C -0.198 4.198 9 C 0.085 3.915 10 C -0.508 4.508 11 H 0.107 0.893 12 C -0.185 4.185 13 N -0.439 5.439 14 Si 0.812 3.188 15 H -0.180 1.180 16 H -0.191 1.191 17 H -0.181 1.181 18 C -0.251 4.251 19 C -0.098 4.098 20 H 0.150 0.850 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.260 0.740 24 H 0.127 0.873 25 H 0.133 0.867 26 H 0.105 0.895 27 H 0.132 0.868 28 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.461 -8.056 1.121 8.839 hybrid contribution 0.344 0.338 -0.222 0.531 sum -3.117 -7.718 0.899 8.372 Atomic orbital electron populations 1.21797 0.75317 1.05284 1.01726 1.44468 1.08223 1.05485 1.77672 1.19581 0.82249 0.85227 0.76161 1.90956 1.69392 1.32843 1.56410 1.84377 1.18046 1.32331 1.85462 1.17928 1.09107 0.89438 0.93882 1.20679 0.99725 0.95900 0.95192 1.20915 1.06178 0.93268 0.99476 1.18088 0.88704 0.93131 0.91616 1.19969 1.29493 1.02418 0.98914 0.89312 1.26966 0.96057 1.01132 0.94327 1.69889 1.28434 1.38057 1.07515 0.85097 0.78385 0.76748 0.78595 1.18006 1.19121 1.18086 1.20847 1.08833 0.97590 0.97824 1.20633 0.98458 0.93978 0.96749 0.84970 0.92928 0.93209 0.73994 0.87264 0.86722 0.89530 0.86817 0.86901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.99 10.70 127.77 1.37 3.35 15 2 N -0.70 -18.39 5.72 -612.41 -3.50 -21.89 15 3 C 0.61 24.76 8.68 129.79 1.13 25.89 15 4 O -0.61 -30.13 16.10 19.80 0.32 -29.81 15 5 O -0.29 -12.58 10.06 2.25 0.02 -12.56 15 6 C -0.06 -3.02 4.97 22.77 0.11 -2.90 15 7 C -0.10 -4.92 9.92 22.10 0.22 -4.70 15 8 C -0.18 -9.80 8.64 22.49 0.19 -9.60 15 9 C 0.09 4.84 5.57 -21.28 -0.12 4.72 15 10 C -0.48 -25.56 9.04 23.41 0.21 -25.35 15 11 H 0.09 4.44 7.90 -2.91 -0.02 4.41 15 12 C 0.03 1.58 5.14 85.24 0.44 2.02 15 13 N -0.81 -42.45 10.95 21.82 0.24 -42.21 15 14 Si 0.99 36.93 29.59 68.60 2.03 38.96 15 15 H -0.26 -9.23 7.11 99.48 0.71 -8.53 15 16 H -0.27 -9.40 7.11 99.48 0.71 -8.70 15 17 H -0.26 -9.22 7.11 99.48 0.71 -8.51 15 18 C -0.23 -11.94 9.74 22.48 0.22 -11.72 15 19 C -0.08 -3.92 9.88 22.10 0.22 -3.71 15 20 H 0.13 1.21 8.14 -2.38 -0.02 1.19 15 21 H 0.05 1.14 8.14 -2.39 -0.02 1.12 15 22 H 0.05 1.11 8.14 -2.39 -0.02 1.09 15 23 H 0.42 8.00 8.94 -92.71 -0.83 7.17 15 24 H 0.11 5.07 8.06 -2.91 -0.02 5.04 15 25 H 0.11 6.37 6.16 -2.91 -0.02 6.35 15 26 H 0.29 13.73 8.30 -92.71 -0.77 12.96 15 27 H 0.11 5.37 8.06 -2.91 -0.02 5.34 15 28 H 0.11 4.98 8.06 -2.91 -0.02 4.96 15 Total: -1.00 -69.06 255.93 3.45 -65.61 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.35 Total: 23.91 kcal Atomic # 6 Polarization: -25.98 SS G_CDS: 3.99 Total: -21.99 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -3.26 Total: -64.10 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: 0.34 Total: -42.38 kcal Atomic # 14 Polarization: 36.93 SS G_CDS: 2.03 Total: 38.96 kcal Total: -69.06 3.45 -65.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002019452.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.659 kcal (2) G-P(sol) polarization free energy of solvation -69.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds