Wall clock time and date at job start Mon Mar 30 2020 02:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29421 * 120.00162 * 2 1 4 4 O 1.41599 * 119.99761 * 359.97438 * 3 2 1 5 5 C 1.47496 * 120.00072 * 179.97438 * 2 1 3 6 6 C 1.39753 * 120.07800 * 0.25209 * 5 2 1 7 7 C 1.37729 * 119.91419 * 180.26855 * 6 5 2 8 8 C 1.39071 * 120.07965 * 359.48357 * 7 6 5 9 9 O 1.35644 * 119.91800 * 180.29410 * 8 7 6 10 10 C 1.34813 * 116.99739 * 354.44866 * 9 8 7 11 11 H 1.07999 * 120.00334 * 5.05597 * 10 9 8 12 12 C 1.38671 * 120.00101 * 185.05781 * 10 9 8 13 13 N 1.31542 * 120.00272 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 119.99735 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47071 * 90.00250 * 14 12 10 16 16 H 1.48497 * 109.47301 * 209.99989 * 14 12 10 17 17 H 1.48500 * 109.47550 * 330.00398 * 14 12 10 18 18 C 1.39070 * 120.16688 * 0.26672 * 8 7 6 19 19 C 1.37722 * 120.07769 * 359.97438 * 18 8 7 20 20 H 1.09002 * 109.47796 * 270.00209 * 1 2 3 21 21 H 1.09003 * 109.47332 * 29.99917 * 1 2 3 22 22 H 1.08996 * 109.47160 * 150.00420 * 1 2 3 23 23 H 0.96700 * 113.99890 * 180.02562 * 4 3 2 24 24 H 1.07990 * 120.04232 * 0.04886 * 6 5 2 25 25 H 1.08000 * 119.95246 * 179.74833 * 7 6 5 26 26 H 0.97000 * 119.99552 * 180.02562 * 13 12 10 27 27 H 1.07993 * 119.96479 * 179.97438 * 18 8 7 28 28 H 1.08004 * 120.04354 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1540 1.1208 0.0000 4 8 1.4460 2.3471 -0.0005 5 6 2.2444 -1.2773 0.0006 6 6 1.5473 -2.4886 -0.0042 7 6 2.2394 -3.6794 0.0019 8 6 3.6301 -3.6774 0.0020 9 8 4.3083 -4.8521 0.0021 10 6 3.5789 -5.9799 0.1182 11 1 2.5002 -5.9272 0.1235 12 6 4.2137 -7.2076 0.2308 13 7 3.5020 -8.3081 0.3436 14 14 6.0794 -7.2988 0.2209 15 1 6.5878 -7.1879 1.6118 16 1 6.5086 -8.5958 -0.3610 17 1 6.6252 -6.1851 -0.5958 18 6 4.3272 -2.4740 0.0015 19 6 3.6419 -1.2794 0.0004 20 1 -0.3635 0.0000 1.0276 21 1 -0.3634 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5137 23 1 2.0144 3.1294 -0.0009 24 1 0.4674 -2.4909 -0.0091 25 1 1.7012 -4.6158 0.0024 26 1 3.9461 -9.1668 0.4228 27 1 5.4071 -2.4762 0.0020 28 1 4.1839 -0.3451 -0.0004 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019442520.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:00 Heat of formation + Delta-G solvation = -17.429317 kcal Electronic energy + Delta-G solvation = -14022.658870 eV Core-core repulsion = 11426.435212 eV Total energy + Delta-G solvation = -2596.223658 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.98854 -39.07649 -37.59616 -34.93607 -34.34368 -32.09872 -30.24022 -29.13018 -27.27888 -23.85209 -23.44512 -20.70169 -19.85438 -19.17289 -17.76182 -17.08693 -16.41670 -16.09099 -15.79902 -15.49144 -15.26707 -15.17856 -14.53431 -14.16228 -14.07388 -13.49756 -13.23260 -13.13193 -12.65162 -12.63331 -12.49106 -11.98482 -11.35358 -11.06797 -10.80939 -10.64926 -9.91350 -8.92836 -8.51845 -6.23833 -0.02130 0.54063 1.33663 1.34217 1.49312 1.54253 2.21194 2.27784 2.78324 2.99380 3.13662 3.60355 4.02937 4.12621 4.25727 4.46021 4.60784 4.68050 4.71594 4.87198 5.07353 5.18689 5.32593 5.50939 5.55919 5.73794 5.82046 6.01454 6.12533 6.81881 6.90898 7.52708 8.58737 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.066206 B = 0.005887 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.821205 B = 4755.099533 C = 5159.547769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.185 3.815 3 N -0.373 5.373 4 O -0.419 6.419 5 C -0.141 4.141 6 C -0.030 4.030 7 C -0.237 4.237 8 C 0.143 3.857 9 O -0.235 6.235 10 C -0.402 4.402 11 H 0.090 0.910 12 C 0.015 3.985 13 N -0.916 5.916 14 Si 0.967 3.033 15 H -0.266 1.266 16 H -0.268 1.268 17 H -0.262 1.262 18 C -0.197 4.197 19 C -0.031 4.031 20 H 0.092 0.908 21 H 0.077 0.923 22 H 0.093 0.907 23 H 0.416 0.584 24 H 0.155 0.845 25 H 0.124 0.876 26 H 0.286 0.714 27 H 0.135 0.865 28 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.507 14.710 -0.529 14.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.002 4.002 3 N -0.117 5.117 4 O -0.330 6.330 5 C -0.143 4.143 6 C -0.050 4.050 7 C -0.257 4.257 8 C 0.091 3.909 9 O -0.140 6.140 10 C -0.478 4.478 11 H 0.108 0.892 12 C -0.185 4.185 13 N -0.556 5.556 14 Si 0.789 3.211 15 H -0.191 1.191 16 H -0.193 1.193 17 H -0.186 1.186 18 C -0.216 4.216 19 C -0.051 4.051 20 H 0.110 0.890 21 H 0.095 0.905 22 H 0.112 0.888 23 H 0.267 0.733 24 H 0.173 0.827 25 H 0.142 0.858 26 H 0.096 0.904 27 H 0.153 0.847 28 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.931 14.526 -0.531 14.664 hybrid contribution 0.041 -0.263 0.037 0.269 sum -1.890 14.263 -0.494 14.396 Atomic orbital electron populations 1.21299 0.90071 1.04593 1.04411 1.23222 0.95520 0.90257 0.91213 1.76504 1.24193 0.92247 1.18758 1.88328 1.35631 1.13408 1.95633 1.18074 0.92857 0.89976 1.13393 1.21183 1.00651 0.89525 0.93606 1.21246 0.93583 0.99570 1.11259 1.19834 0.91820 0.86275 0.92932 1.83501 1.36662 1.12469 1.81404 1.20791 0.92324 0.82622 1.52090 0.89243 1.25260 1.04785 0.93229 0.95219 1.69709 1.38368 0.98789 1.48717 0.85267 0.78108 0.78263 0.79446 1.19097 1.19302 1.18574 1.20406 1.00594 0.89341 1.11224 1.21099 0.93243 0.97007 0.93746 0.88992 0.90454 0.88802 0.73294 0.82732 0.85847 0.90422 0.84729 0.83753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.28 71.23 0.66 -2.46 15 2 C 0.18 5.15 7.11 45.35 0.32 5.47 15 3 N -0.37 -10.48 11.23 -42.96 -0.48 -10.96 15 4 O -0.42 -9.69 13.73 -38.78 -0.53 -10.22 15 5 C -0.14 -4.42 5.87 -20.10 -0.12 -4.54 15 6 C -0.03 -0.96 9.35 22.52 0.21 -0.75 15 7 C -0.24 -9.64 9.15 22.35 0.20 -9.43 15 8 C 0.14 6.34 6.65 22.67 0.15 6.49 15 9 O -0.23 -12.14 8.58 -21.40 -0.18 -12.33 15 10 C -0.40 -22.58 9.94 67.92 0.68 -21.91 15 11 H 0.09 5.18 5.42 -2.91 -0.02 5.17 15 12 C 0.01 0.82 5.49 84.84 0.47 1.28 15 13 N -0.92 -52.78 13.96 21.62 0.30 -52.48 15 14 Si 0.97 43.77 28.62 68.60 1.96 45.74 15 15 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 16 H -0.27 -11.41 7.11 99.48 0.71 -10.71 15 17 H -0.26 -11.81 7.11 99.48 0.71 -11.10 15 18 C -0.20 -7.34 9.97 22.35 0.22 -7.11 15 19 C -0.03 -1.02 9.57 22.51 0.22 -0.80 15 20 H 0.09 1.78 8.14 -2.39 -0.02 1.76 15 21 H 0.08 1.64 7.35 -2.39 -0.02 1.62 15 22 H 0.09 1.72 6.46 -2.39 -0.02 1.71 15 23 H 0.42 5.58 9.28 -74.06 -0.69 4.89 15 24 H 0.16 3.81 6.34 -2.92 -0.02 3.79 15 25 H 0.12 5.39 5.62 -2.91 -0.02 5.37 15 26 H 0.29 15.13 8.31 -92.71 -0.77 14.36 15 27 H 0.13 4.60 8.06 -2.91 -0.02 4.58 15 28 H 0.14 4.14 7.55 -2.91 -0.02 4.11 15 Total: -1.00 -63.97 252.36 4.59 -59.38 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.51 Total: 14.63 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 3.01 Total: -33.76 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: -0.18 Total: -63.45 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.72 Total: -22.54 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.96 Total: 45.74 kcal Total: -63.97 4.59 -59.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019442520.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.954 kcal (2) G-P(sol) polarization free energy of solvation -63.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds