Wall clock time and date at job start Mon Mar 30 2020 02:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29439 * 119.99826 * 2 1 4 4 O 1.41597 * 119.99880 * 359.97438 * 3 2 1 5 5 C 1.47433 * 120.00277 * 179.97438 * 2 1 3 6 6 C 1.39631 * 120.19568 * 0.02562 * 5 2 1 7 7 C 1.37882 * 119.91766 * 179.97438 * 6 5 2 8 8 C 1.38524 * 120.31681 * 0.02562 * 7 6 5 9 9 C 1.38089 * 120.39297 * 359.97305 * 8 7 6 10 10 C 1.38763 * 120.07213 * 0.28092 * 9 8 7 11 11 O 1.35603 * 120.15190 * 179.71962 * 10 9 8 12 12 C 1.34807 * 117.00237 * 354.38606 * 11 10 9 13 13 H 1.07999 * 119.99604 * 5.03573 * 12 11 10 14 14 C 1.38663 * 120.00136 * 185.03357 * 12 11 10 15 15 N 1.31540 * 120.00068 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 119.99913 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47233 * 89.99546 * 16 14 12 18 18 H 1.48500 * 109.46951 * 209.99991 * 16 14 12 19 19 H 1.48499 * 109.46793 * 329.99344 * 16 14 12 20 20 H 1.08994 * 109.46971 * 270.00626 * 1 2 3 21 21 H 1.08996 * 109.47031 * 30.00466 * 1 2 3 22 22 H 1.08996 * 109.46639 * 150.00645 * 1 2 3 23 23 H 0.96698 * 114.00151 * 180.02562 * 4 3 2 24 24 H 1.08001 * 120.03744 * 0.02562 * 6 5 2 25 25 H 1.08001 * 119.84370 * 179.97438 * 7 6 5 26 26 H 1.08001 * 119.80682 * 180.02562 * 8 7 6 27 27 H 1.08001 * 119.96467 * 180.02562 * 9 8 7 28 28 H 0.96997 * 119.99738 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1542 1.1210 0.0000 4 8 1.4461 2.3472 -0.0005 5 6 2.2443 -1.2768 0.0006 6 6 1.5503 -2.4884 0.0006 7 6 2.2456 -3.6791 0.0006 8 6 3.6308 -3.6800 0.0011 9 6 4.3302 -2.4893 0.0011 10 6 3.6469 -1.2816 0.0064 11 8 4.3321 -0.1114 0.0121 12 6 5.6728 -0.1877 0.1298 13 1 6.1606 -1.1513 0.1323 14 6 6.4256 0.9708 0.2477 15 7 7.7338 0.8963 0.3631 16 14 5.5817 2.6374 0.2441 17 1 5.2328 3.0186 1.6362 18 1 6.4970 3.6544 -0.3331 19 1 4.3445 2.5639 -0.5739 20 1 -0.3633 0.0001 1.0276 21 1 -0.3633 0.8899 -0.5139 22 1 -0.3632 -0.8900 -0.5137 23 1 2.0145 3.1296 -0.0009 24 1 0.4703 -2.4929 -0.0003 25 1 1.7076 -4.6156 0.0010 26 1 4.1670 -4.6175 0.0007 27 1 5.4101 -2.4981 0.0011 28 1 8.2603 1.7067 0.4459 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019489310.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:09 Heat of formation + Delta-G solvation = 11.220755 kcal Electronic energy + Delta-G solvation = -14756.891108 eV Core-core repulsion = 12161.909811 eV Total energy + Delta-G solvation = -2594.981297 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 5.49 seconds Orbital eigenvalues (eV) -39.34455 -36.91067 -36.27405 -33.63601 -32.43835 -29.79964 -29.01865 -27.73646 -25.23894 -22.82227 -21.20745 -19.35308 -17.90028 -17.16193 -16.26586 -15.44690 -14.78782 -14.52844 -14.22370 -13.81873 -13.50757 -13.43151 -13.18009 -12.36853 -12.20892 -12.15033 -11.71168 -11.49044 -10.99896 -10.79903 -10.75407 -10.09661 -9.57444 -9.56358 -9.04844 -8.89492 -8.02688 -7.32586 -6.47395 -4.11318 1.52616 2.23398 3.04925 3.25002 3.29043 3.50181 3.70914 4.27626 4.49262 4.76627 5.01310 5.08251 5.46738 5.52574 5.64070 5.78873 5.86069 5.97819 6.14994 6.35258 6.49674 6.67646 6.89383 7.10493 7.20950 7.36253 7.52981 7.72014 7.96440 8.36984 8.88198 9.52675 10.58681 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.023686 B = 0.013401 C = 0.008604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.870944 B = 2088.826109 C = 3253.440657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.166 3.834 3 N -0.306 5.306 4 O -0.432 6.432 5 C -0.141 4.141 6 C -0.046 4.046 7 C -0.214 4.214 8 C -0.060 4.060 9 C -0.225 4.225 10 C 0.182 3.818 11 O -0.171 6.171 12 C -0.393 4.393 13 H 0.107 0.893 14 C 0.067 3.933 15 N -0.873 5.873 16 Si 0.905 3.095 17 H -0.276 1.276 18 H -0.289 1.289 19 H -0.240 1.240 20 H 0.074 0.926 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.396 0.604 24 H 0.120 0.880 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.136 0.864 28 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.762 -3.368 -0.607 11.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 N -0.052 5.052 4 O -0.337 6.337 5 C -0.144 4.144 6 C -0.066 4.066 7 C -0.233 4.233 8 C -0.079 4.079 9 C -0.244 4.244 10 C 0.125 3.875 11 O -0.071 6.071 12 C -0.468 4.468 13 H 0.124 0.876 14 C -0.137 4.137 15 N -0.510 5.510 16 Si 0.730 3.270 17 H -0.201 1.201 18 H -0.216 1.216 19 H -0.163 1.163 20 H 0.093 0.907 21 H 0.091 0.909 22 H 0.092 0.908 23 H 0.244 0.756 24 H 0.138 0.862 25 H 0.130 0.870 26 H 0.130 0.870 27 H 0.154 0.846 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.256 -2.862 -0.606 10.665 hybrid contribution -0.361 0.920 0.073 0.991 sum -10.618 -1.942 -0.533 10.807 Atomic orbital electron populations 1.21183 0.92589 1.03206 1.02882 1.23084 0.93465 0.91254 0.94380 1.77368 1.21193 0.90779 1.15844 1.88227 1.35655 1.14136 1.95686 1.17311 0.89591 0.90121 1.17352 1.20747 0.98616 0.90646 0.96600 1.20542 0.94134 0.96941 1.11707 1.20941 0.94050 0.97066 0.95836 1.21272 1.01282 0.91659 1.10216 1.19192 0.90191 0.86174 0.91913 1.83757 1.20824 1.25870 1.76613 1.20905 0.77742 0.96971 1.51205 0.87613 1.24498 0.94706 0.99555 0.94971 1.69650 1.04531 1.30565 1.46238 0.86168 0.80472 0.80866 0.79514 1.20148 1.21552 1.16269 0.90694 0.90928 0.90835 0.75639 0.86173 0.86961 0.86959 0.84622 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.28 36.01 0.33 -1.75 15 2 C 0.17 3.28 7.11 -79.86 -0.57 2.71 15 3 N -0.31 -6.75 9.71 35.06 0.34 -6.41 15 4 O -0.43 -8.17 13.73 -11.47 -0.16 -8.33 15 5 C -0.14 -2.84 5.88 -104.87 -0.62 -3.46 15 6 C -0.05 -0.75 9.36 -39.19 -0.37 -1.12 15 7 C -0.21 -3.37 10.03 -39.61 -0.40 -3.76 15 8 C -0.06 -1.03 10.03 -39.53 -0.40 -1.43 15 9 C -0.23 -4.75 9.16 -39.44 -0.36 -5.11 15 10 C 0.18 4.24 6.66 -38.63 -0.26 3.98 15 11 O -0.17 -4.49 6.47 0.57 0.00 -4.49 15 12 C -0.39 -10.99 9.95 30.89 0.31 -10.68 15 13 H 0.11 2.99 5.44 -52.49 -0.29 2.71 15 14 C 0.07 1.89 5.49 -17.52 -0.10 1.79 15 15 N -0.87 -25.12 13.96 55.48 0.77 -24.34 15 16 Si 0.90 21.77 28.62 -169.99 -4.86 16.91 15 17 H -0.28 -6.64 7.11 56.52 0.40 -6.23 15 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 19 H -0.24 -5.66 6.83 56.52 0.39 -5.28 15 20 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 21 H 0.07 1.09 7.35 -51.93 -0.38 0.71 15 22 H 0.07 0.91 6.48 -51.93 -0.34 0.57 15 23 H 0.40 6.21 9.28 45.56 0.42 6.63 15 24 H 0.12 1.55 6.36 -52.49 -0.33 1.22 15 25 H 0.11 1.41 8.06 -52.49 -0.42 0.99 15 26 H 0.11 1.61 8.06 -52.49 -0.42 1.18 15 27 H 0.14 2.98 5.64 -52.49 -0.30 2.68 15 28 H 0.28 7.47 8.31 -40.82 -0.34 7.13 15 LS Contribution 249.59 15.07 3.76 3.76 Total: -1.00 -31.00 249.59 -4.19 -35.19 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -1.63 Total: 6.54 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -2.42 Total: -18.83 kcal Atomic # 7 Polarization: -31.86 SS G_CDS: 1.11 Total: -30.75 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.15 Total: -12.82 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.86 Total: 16.91 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -31.00 -4.19 -35.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019489310.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.411 kcal (2) G-P(sol) polarization free energy of solvation -31.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.49 seconds