Wall clock time and date at job start Mon Mar 30 2020 02:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29439 * 119.99826 * 2 1 4 4 O 1.41597 * 119.99880 * 359.97438 * 3 2 1 5 5 C 1.47433 * 120.00277 * 179.97438 * 2 1 3 6 6 C 1.39631 * 120.19568 * 0.02562 * 5 2 1 7 7 C 1.37882 * 119.91766 * 179.97438 * 6 5 2 8 8 C 1.38524 * 120.31681 * 0.02562 * 7 6 5 9 9 C 1.38089 * 120.39297 * 359.97305 * 8 7 6 10 10 C 1.38763 * 120.07213 * 0.28092 * 9 8 7 11 11 O 1.35603 * 120.15190 * 179.71962 * 10 9 8 12 12 C 1.34807 * 117.00237 * 354.38606 * 11 10 9 13 13 H 1.07999 * 119.99604 * 5.03573 * 12 11 10 14 14 C 1.38663 * 120.00136 * 185.03357 * 12 11 10 15 15 N 1.31540 * 120.00068 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 119.99913 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47233 * 89.99546 * 16 14 12 18 18 H 1.48500 * 109.46951 * 209.99991 * 16 14 12 19 19 H 1.48499 * 109.46793 * 329.99344 * 16 14 12 20 20 H 1.08994 * 109.46971 * 270.00626 * 1 2 3 21 21 H 1.08996 * 109.47031 * 30.00466 * 1 2 3 22 22 H 1.08996 * 109.46639 * 150.00645 * 1 2 3 23 23 H 0.96698 * 114.00151 * 180.02562 * 4 3 2 24 24 H 1.08001 * 120.03744 * 0.02562 * 6 5 2 25 25 H 1.08001 * 119.84370 * 179.97438 * 7 6 5 26 26 H 1.08001 * 119.80682 * 180.02562 * 8 7 6 27 27 H 1.08001 * 119.96467 * 180.02562 * 9 8 7 28 28 H 0.96997 * 119.99738 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1542 1.1210 0.0000 4 8 1.4461 2.3472 -0.0005 5 6 2.2443 -1.2768 0.0006 6 6 1.5503 -2.4884 0.0006 7 6 2.2456 -3.6791 0.0006 8 6 3.6308 -3.6800 0.0011 9 6 4.3302 -2.4893 0.0011 10 6 3.6469 -1.2816 0.0064 11 8 4.3321 -0.1114 0.0121 12 6 5.6728 -0.1877 0.1298 13 1 6.1606 -1.1513 0.1323 14 6 6.4256 0.9708 0.2477 15 7 7.7338 0.8963 0.3631 16 14 5.5817 2.6374 0.2441 17 1 5.2328 3.0186 1.6362 18 1 6.4970 3.6544 -0.3331 19 1 4.3445 2.5639 -0.5739 20 1 -0.3633 0.0001 1.0276 21 1 -0.3633 0.8899 -0.5139 22 1 -0.3632 -0.8900 -0.5137 23 1 2.0145 3.1296 -0.0009 24 1 0.4703 -2.4929 -0.0003 25 1 1.7076 -4.6156 0.0010 26 1 4.1670 -4.6175 0.0007 27 1 5.4101 -2.4981 0.0011 28 1 8.2603 1.7067 0.4459 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019489310.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:08 Heat of formation + Delta-G solvation = -11.039729 kcal Electronic energy + Delta-G solvation = -14757.856395 eV Core-core repulsion = 12161.909811 eV Total energy + Delta-G solvation = -2595.946584 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -40.97114 -38.52088 -37.78355 -35.07781 -34.45289 -31.29268 -30.56774 -29.06048 -27.17133 -24.31522 -22.81391 -20.91730 -19.72994 -18.86886 -17.74187 -17.04832 -16.31196 -16.17837 -15.85409 -15.45742 -15.10670 -14.98601 -14.53029 -14.23042 -13.98420 -13.47399 -13.12882 -12.93455 -12.57612 -12.53661 -12.24037 -11.88559 -11.40713 -11.02196 -10.89723 -10.54495 -9.51633 -8.96300 -8.52307 -6.21643 0.04440 0.71797 1.30683 1.36369 1.57705 1.61460 2.29624 2.34832 2.79933 3.06822 3.20723 3.62673 4.16784 4.23303 4.35525 4.52868 4.61943 4.71835 4.80154 4.88447 5.14567 5.26522 5.36502 5.58134 5.70258 5.76745 5.88544 6.01299 6.22901 6.83761 6.98127 7.62615 8.58127 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.023686 B = 0.013401 C = 0.008604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.870944 B = 2088.826109 C = 3253.440657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.158 3.842 3 N -0.356 5.356 4 O -0.426 6.426 5 C -0.149 4.149 6 C -0.035 4.035 7 C -0.186 4.186 8 C -0.055 4.055 9 C -0.252 4.252 10 C 0.143 3.857 11 O -0.201 6.201 12 C -0.400 4.400 13 H 0.082 0.918 14 C 0.013 3.987 15 N -0.921 5.921 16 Si 0.967 3.033 17 H -0.277 1.277 18 H -0.280 1.280 19 H -0.237 1.237 20 H 0.092 0.908 21 H 0.069 0.931 22 H 0.106 0.894 23 H 0.407 0.593 24 H 0.170 0.830 25 H 0.164 0.836 26 H 0.145 0.855 27 H 0.109 0.891 28 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.603 -5.133 -0.720 15.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.029 4.029 3 N -0.101 5.101 4 O -0.334 6.334 5 C -0.152 4.152 6 C -0.055 4.055 7 C -0.205 4.205 8 C -0.073 4.073 9 C -0.272 4.272 10 C 0.090 3.910 11 O -0.104 6.104 12 C -0.477 4.477 13 H 0.099 0.901 14 C -0.186 4.186 15 N -0.562 5.562 16 Si 0.790 3.210 17 H -0.203 1.203 18 H -0.206 1.206 19 H -0.160 1.160 20 H 0.110 0.890 21 H 0.088 0.912 22 H 0.125 0.875 23 H 0.256 0.744 24 H 0.187 0.813 25 H 0.182 0.818 26 H 0.163 0.837 27 H 0.127 0.873 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.134 -4.670 -0.726 14.903 hybrid contribution 0.544 1.119 0.103 1.248 sum -13.590 -3.551 -0.623 14.060 Atomic orbital electron populations 1.21237 0.88719 1.04726 1.04374 1.23561 0.96100 0.90418 0.92846 1.77309 1.23245 0.92302 1.17274 1.88179 1.35701 1.13876 1.95677 1.17865 0.88461 0.92270 1.16575 1.21351 1.01010 0.89044 0.94086 1.21205 0.93305 0.98885 1.07071 1.21375 0.95385 0.96676 0.93904 1.21317 1.00503 0.93058 1.12275 1.19899 0.91876 0.86151 0.93114 1.83738 1.19274 1.27295 1.80138 1.20837 0.79248 0.96245 1.51356 0.90056 1.25246 0.95293 1.02782 0.95257 1.69730 1.05657 1.31374 1.49405 0.85252 0.79516 0.77018 0.79237 1.20286 1.20588 1.16013 0.88972 0.91227 0.87514 0.74414 0.81292 0.81822 0.83702 0.87263 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 9.28 71.24 0.66 -2.71 15 2 C 0.16 5.90 7.11 45.34 0.32 6.23 15 3 N -0.36 -15.49 9.71 -42.99 -0.42 -15.90 15 4 O -0.43 -15.68 13.73 -38.78 -0.53 -16.21 15 5 C -0.15 -5.68 5.88 -20.03 -0.12 -5.80 15 6 C -0.04 -0.96 9.36 22.52 0.21 -0.75 15 7 C -0.19 -4.72 10.03 22.25 0.22 -4.49 15 8 C -0.05 -1.71 10.03 22.30 0.22 -1.49 15 9 C -0.25 -10.81 9.16 22.36 0.20 -10.60 15 10 C 0.14 6.73 6.66 22.89 0.15 6.88 15 11 O -0.20 -11.04 6.47 -20.89 -0.14 -11.17 15 12 C -0.40 -23.91 9.95 67.92 0.68 -23.24 15 13 H 0.08 5.05 5.44 -2.91 -0.02 5.03 15 14 C 0.01 0.77 5.49 84.84 0.47 1.24 15 15 N -0.92 -56.12 13.96 21.61 0.30 -55.81 15 16 Si 0.97 47.10 28.62 68.60 1.96 49.06 15 17 H -0.28 -13.31 7.11 99.48 0.71 -12.61 15 18 H -0.28 -12.95 7.11 99.48 0.71 -12.24 15 19 H -0.24 -11.27 6.83 99.48 0.68 -10.59 15 20 H 0.09 2.07 8.14 -2.39 -0.02 2.05 15 21 H 0.07 1.85 7.35 -2.39 -0.02 1.83 15 22 H 0.11 1.96 6.48 -2.39 -0.02 1.95 15 23 H 0.41 12.47 9.28 -74.06 -0.69 11.78 15 24 H 0.17 2.99 6.36 -2.91 -0.02 2.97 15 25 H 0.16 2.66 8.06 -2.91 -0.02 2.64 15 26 H 0.15 3.56 8.06 -2.91 -0.02 3.54 15 27 H 0.11 5.18 5.64 -2.91 -0.02 5.17 15 28 H 0.28 15.91 8.31 -92.71 -0.77 15.14 15 Total: -1.00 -72.80 249.59 4.69 -68.11 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.49 Total: 16.66 kcal Atomic # 6 Polarization: -37.75 SS G_CDS: 3.02 Total: -34.73 kcal Atomic # 7 Polarization: -71.60 SS G_CDS: -0.12 Total: -71.72 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.67 Total: -27.38 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.96 Total: 49.06 kcal Total: -72.80 4.69 -68.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019489310.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.071 kcal (2) G-P(sol) polarization free energy of solvation -72.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds