Wall clock time and date at job start Mon Mar 30 2020 02:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29327 * 120.00073 * 2 1 4 4 O 1.41593 * 120.00222 * 359.97438 * 3 2 1 5 5 C 1.47661 * 119.99606 * 180.02562 * 2 1 3 6 6 C 1.39676 * 120.11901 * 359.97438 * 5 2 1 7 7 C 1.37997 * 119.99058 * 180.02562 * 6 5 2 8 8 C 1.38242 * 120.22075 * 359.97438 * 7 6 5 9 9 C 1.38971 * 120.23422 * 0.02562 * 8 7 6 10 10 O 1.35751 * 119.99337 * 179.97438 * 9 8 7 11 11 C 1.34829 * 117.00305 * 354.46056 * 10 9 8 12 12 H 1.07996 * 120.00159 * 5.05577 * 11 10 9 13 13 C 1.38654 * 119.99977 * 185.05364 * 11 10 9 14 14 N 1.31559 * 119.99961 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00257 * 0.02562 * 13 11 10 16 16 H 1.48493 * 109.47238 * 89.99965 * 15 13 11 17 17 H 1.48504 * 109.47145 * 210.00168 * 15 13 11 18 18 H 1.48500 * 109.46888 * 329.99910 * 15 13 11 19 19 C 1.38634 * 120.00627 * 359.72656 * 9 8 7 20 20 H 1.09005 * 109.47056 * 270.00300 * 1 2 3 21 21 H 1.09000 * 109.47186 * 29.99716 * 1 2 3 22 22 H 1.09007 * 109.47484 * 150.00077 * 1 2 3 23 23 H 0.96701 * 114.00200 * 179.97438 * 4 3 2 24 24 H 1.08001 * 120.00288 * 359.97438 * 6 5 2 25 25 H 1.07993 * 119.88924 * 180.02562 * 7 6 5 26 26 H 1.08004 * 119.88454 * 179.97438 * 8 7 6 27 27 H 0.97004 * 119.99961 * 179.97438 * 14 13 11 28 28 H 1.07999 * 120.11233 * 180.29552 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1536 1.1200 0.0000 4 8 1.4457 2.3463 -0.0005 5 6 2.2452 -1.2788 -0.0006 6 6 1.5492 -2.4899 -0.0006 7 6 2.2418 -3.6835 -0.0006 8 6 3.6242 -3.6858 -0.0011 9 6 4.3260 -2.4863 -0.0011 10 8 5.6835 -2.4943 -0.0011 11 6 6.2886 -3.6935 0.1149 12 1 5.6984 -4.5979 0.1201 13 6 7.6687 -3.7657 0.2273 14 7 8.2591 -4.9359 0.3410 15 14 8.6896 -2.2014 0.2189 16 1 8.8507 -1.7079 1.6102 17 1 10.0259 -2.4855 -0.3634 18 1 8.0039 -1.1672 -0.5968 19 6 3.6399 -1.2816 -0.0063 20 1 -0.3633 0.0001 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3634 -0.8900 -0.5138 23 1 2.0141 3.1286 -0.0001 24 1 0.4692 -2.4921 0.0003 25 1 1.7021 -4.6188 -0.0010 26 1 4.1608 -4.6231 -0.0007 27 1 9.2247 -4.9864 0.4193 28 1 4.1836 -0.3485 -0.0111 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019510701.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:19 Heat of formation + Delta-G solvation = -16.718373 kcal Electronic energy + Delta-G solvation = -14121.241651 eV Core-core repulsion = 11525.048822 eV Total energy + Delta-G solvation = -2596.192829 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -40.96356 -39.05975 -37.69507 -35.02304 -34.43461 -31.58977 -30.69206 -29.02777 -27.23814 -24.33648 -23.04006 -21.06794 -19.65589 -18.76370 -17.83547 -17.01934 -16.63854 -16.37719 -15.80515 -15.64260 -15.30709 -15.00862 -14.39369 -14.28546 -14.08326 -13.54017 -13.18236 -13.10628 -12.65174 -12.62778 -12.41364 -11.95790 -11.35634 -11.08125 -10.91296 -10.85245 -9.58462 -9.10343 -8.50867 -6.23269 -0.15623 0.62967 1.30337 1.32092 1.45179 1.51013 2.11440 2.27148 2.77960 2.95342 3.12433 3.66439 4.07453 4.15840 4.30077 4.40307 4.60980 4.64762 4.71065 4.92096 5.07375 5.17947 5.36788 5.42223 5.64114 5.74683 5.84216 5.94619 6.14571 6.82814 6.83896 7.57857 8.60378 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.035962 B = 0.007315 C = 0.006102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.411062 B = 3826.736191 C = 4587.353460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.171 3.829 3 N -0.368 5.368 4 O -0.410 6.410 5 C -0.023 4.023 6 C -0.141 4.141 7 C -0.072 4.072 8 C -0.217 4.217 9 C 0.115 3.885 10 O -0.247 6.247 11 C -0.399 4.399 12 H 0.089 0.911 13 C 0.014 3.986 14 N -0.920 5.920 15 Si 0.964 3.036 16 H -0.267 1.267 17 H -0.265 1.265 18 H -0.267 1.267 19 C -0.159 4.159 20 H 0.096 0.904 21 H 0.076 0.924 22 H 0.105 0.895 23 H 0.418 0.582 24 H 0.170 0.830 25 H 0.159 0.841 26 H 0.118 0.882 27 H 0.285 0.715 28 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.907 8.297 -0.527 17.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.018 4.018 3 N -0.110 5.110 4 O -0.323 6.323 5 C -0.024 4.024 6 C -0.161 4.161 7 C -0.089 4.089 8 C -0.237 4.237 9 C 0.066 3.934 10 O -0.155 6.155 11 C -0.475 4.475 12 H 0.106 0.894 13 C -0.185 4.185 14 N -0.561 5.561 15 Si 0.787 3.213 16 H -0.192 1.192 17 H -0.190 1.190 18 H -0.192 1.192 19 C -0.181 4.181 20 H 0.115 0.885 21 H 0.095 0.905 22 H 0.123 0.877 23 H 0.269 0.731 24 H 0.187 0.813 25 H 0.177 0.823 26 H 0.136 0.864 27 H 0.095 0.905 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.203 8.475 -0.527 16.548 hybrid contribution 0.728 0.500 0.038 0.884 sum -13.475 8.975 -0.490 16.198 Atomic orbital electron populations 1.21307 0.88497 1.05136 1.04808 1.23432 0.96297 0.89889 0.92132 1.76575 1.25011 0.92939 1.16508 1.88306 1.35437 1.13194 1.95338 1.18075 0.90625 0.91324 1.02407 1.21335 1.01286 0.89524 1.03925 1.21168 0.91866 0.99602 0.96309 1.21567 0.96370 0.97376 1.08349 1.19444 0.83171 0.94813 0.95968 1.83535 1.16204 1.32647 1.83144 1.20758 0.91889 0.83023 1.51871 0.89391 1.25195 0.96820 1.00958 0.95538 1.69715 1.11715 1.25067 1.49568 0.85305 0.77760 0.78875 0.79337 1.19170 1.19008 1.19199 1.20461 0.94041 0.95384 1.08172 0.88533 0.90491 0.87670 0.73110 0.81273 0.82340 0.86439 0.90541 0.86539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.27 71.23 0.66 -2.00 15 2 C 0.17 4.87 7.12 45.42 0.32 5.19 15 3 N -0.37 -11.46 11.23 -42.88 -0.48 -11.94 15 4 O -0.41 -10.07 13.73 -38.77 -0.53 -10.61 15 5 C -0.02 -0.75 5.87 -20.14 -0.12 -0.86 15 6 C -0.14 -3.74 9.36 22.56 0.21 -3.53 15 7 C -0.07 -2.17 10.02 22.21 0.22 -1.94 15 8 C -0.22 -8.98 9.16 22.45 0.21 -8.77 15 9 C 0.11 5.39 6.64 22.54 0.15 5.54 15 10 O -0.25 -13.61 8.58 -22.74 -0.20 -13.81 15 11 C -0.40 -23.37 9.94 67.92 0.68 -22.70 15 12 H 0.09 5.28 5.43 -2.91 -0.02 5.26 15 13 C 0.01 0.79 5.49 84.83 0.47 1.26 15 14 N -0.92 -54.59 13.96 21.61 0.30 -54.29 15 15 Si 0.96 45.99 28.62 68.60 1.96 47.95 15 16 H -0.27 -12.28 7.11 99.48 0.71 -11.57 15 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 18 H -0.27 -12.95 7.11 99.48 0.71 -12.24 15 19 C -0.16 -6.54 9.52 22.66 0.22 -6.33 15 20 H 0.10 1.60 8.14 -2.38 -0.02 1.58 15 21 H 0.08 1.50 7.35 -2.39 -0.02 1.48 15 22 H 0.10 1.48 6.47 -2.38 -0.02 1.46 15 23 H 0.42 6.49 9.28 -74.06 -0.69 5.80 15 24 H 0.17 2.86 6.35 -2.91 -0.02 2.85 15 25 H 0.16 3.53 8.06 -2.91 -0.02 3.51 15 26 H 0.12 5.29 5.62 -2.91 -0.02 5.27 15 27 H 0.28 15.52 8.31 -92.71 -0.77 14.75 15 28 H 0.12 4.93 7.55 -2.91 -0.02 4.91 15 Total: -1.00 -69.45 252.42 4.58 -64.86 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.51 Total: 11.99 kcal Atomic # 6 Polarization: -37.17 SS G_CDS: 3.01 Total: -34.16 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: -0.18 Total: -66.24 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.73 Total: -24.42 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.96 Total: 47.95 kcal Total: -69.45 4.58 -64.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019510701.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.146 kcal (2) G-P(sol) polarization free energy of solvation -69.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds