Wall clock time and date at job start Mon Mar 30 2020 03:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.46888 * 120.00297 * 345.36121 * 3 2 1 5 5 N 1.34780 * 119.99937 * 0.02562 * 4 3 2 6 6 O 1.21685 * 120.00057 * 179.97438 * 4 3 2 7 7 C 1.37968 * 119.99994 * 165.36604 * 3 2 1 8 8 C 1.51276 * 125.15750 * 180.02562 * 7 3 2 9 9 C 1.54405 * 105.18202 * 182.11779 * 8 7 3 10 10 C 1.54257 * 102.54022 * 15.43093 * 9 8 7 11 11 N 1.35749 * 125.15292 * 0.02562 * 7 3 2 12 12 C 1.36601 * 125.29724 * 339.45864 * 11 7 3 13 13 H 1.07997 * 120.00180 * 333.50023 * 12 11 7 14 14 C 1.39110 * 120.00190 * 153.49906 * 12 11 7 15 15 N 1.31311 * 119.99991 * 334.96959 * 14 12 11 16 16 Si 1.86798 * 120.00263 * 154.97074 * 14 12 11 17 17 H 1.48506 * 109.46892 * 59.99956 * 16 14 12 18 18 H 1.48501 * 109.47163 * 300.00103 * 16 14 12 19 19 H 1.48499 * 109.47355 * 180.02562 * 16 14 12 20 20 H 0.96995 * 119.99722 * 359.97438 * 5 4 3 21 21 H 0.96993 * 119.99795 * 179.97438 * 5 4 3 22 22 H 1.09003 * 110.30038 * 301.04345 * 8 7 3 23 23 H 1.08998 * 110.30171 * 63.09169 * 8 7 3 24 24 H 1.08996 * 110.80641 * 133.85344 * 9 8 7 25 25 H 1.08999 * 110.80428 * 257.35184 * 9 8 7 26 26 H 1.08998 * 110.44771 * 214.49919 * 10 9 8 27 27 H 1.08999 * 110.31334 * 92.04773 * 10 9 8 28 28 H 0.97010 * 119.99940 * 354.15672 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3030 -1.2298 0.3215 5 7 2.6297 -2.3596 0.6160 6 8 4.5199 -1.2293 0.3210 7 6 3.2573 1.1570 -0.3019 8 6 4.7639 1.2891 -0.3368 9 6 5.0321 2.7734 -0.6671 10 6 3.6623 3.4294 -0.3972 11 7 2.6864 2.3488 -0.6126 12 6 1.4071 2.5181 -1.0607 13 1 0.9105 1.7192 -1.5912 14 6 0.7439 3.7197 -0.8337 15 7 1.0929 4.4814 0.1774 16 14 -0.6430 4.2497 -1.9672 17 1 -1.7240 3.2319 -1.9361 18 1 -0.1267 4.3812 -3.3533 19 1 -1.1807 5.5575 -1.5137 20 1 1.6597 -2.3600 0.6160 21 1 3.1151 -3.1721 0.8279 22 1 5.1884 1.0352 0.6346 23 1 5.1821 0.6462 -1.1113 24 1 5.7972 3.1845 -0.0086 25 1 5.3155 2.8921 -1.7129 26 1 3.4866 4.2460 -1.0975 27 1 3.6113 3.7899 0.6302 28 1 1.7537 4.1686 0.8149 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033593581.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:51 Heat of formation + Delta-G solvation = -24.319239 kcal Electronic energy + Delta-G solvation = -14940.613271 eV Core-core repulsion = 12376.383595 eV Total energy + Delta-G solvation = -2564.229676 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.13116 -39.60536 -36.96470 -35.52360 -34.16999 -32.78240 -31.71976 -27.74937 -26.89156 -22.89280 -22.39290 -21.36260 -20.23086 -18.79197 -17.86541 -16.95079 -16.81373 -16.12207 -15.67633 -15.30838 -14.94960 -14.52127 -14.29462 -13.81189 -13.73050 -13.67891 -13.17117 -12.82760 -12.58767 -12.43291 -12.22116 -12.06364 -11.93780 -11.21618 -10.78542 -10.63405 -10.38887 -9.22276 -8.74873 -6.25826 0.62465 1.43903 1.51453 1.69659 2.09698 2.16671 2.26526 2.59724 2.74675 3.17428 3.22491 3.53951 3.82211 4.03493 4.10139 4.45773 4.65526 4.72209 4.86163 5.02915 5.11683 5.26876 5.41260 5.49942 5.76995 6.17283 6.21891 6.68407 6.80512 7.20623 7.23528 7.72720 8.13153 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.029062 B = 0.011615 C = 0.008786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.227817 B = 2410.048081 C = 3186.289283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C 0.303 3.697 3 C -0.370 4.370 4 C 0.605 3.395 5 N -0.853 5.853 6 O -0.600 6.600 7 C 0.225 3.775 8 C -0.069 4.069 9 C -0.124 4.124 10 C 0.083 3.917 11 N -0.397 5.397 12 C -0.403 4.403 13 H 0.083 0.917 14 C -0.009 4.009 15 N -0.857 5.857 16 Si 1.111 2.889 17 H -0.283 1.283 18 H -0.255 1.255 19 H -0.269 1.269 20 H 0.398 0.602 21 H 0.408 0.592 22 H 0.099 0.901 23 H 0.097 0.903 24 H 0.117 0.883 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.884 -2.299 -1.768 7.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.230 5.230 2 C -0.003 4.003 3 C -0.391 4.391 4 C 0.397 3.603 5 N -0.415 5.415 6 O -0.484 6.484 7 C 0.088 3.912 8 C -0.107 4.107 9 C -0.161 4.161 10 C -0.040 4.040 11 N -0.073 5.073 12 C -0.531 4.531 13 H 0.101 0.899 14 C -0.218 4.218 15 N -0.486 5.486 16 Si 0.930 3.070 17 H -0.209 1.209 18 H -0.179 1.179 19 H -0.193 1.193 20 H 0.226 0.774 21 H 0.239 0.761 22 H 0.117 0.883 23 H 0.115 0.885 24 H 0.135 0.865 25 H 0.109 0.891 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.714 -0.520 -2.190 5.224 hybrid contribution 0.650 -1.674 0.667 1.916 sum 5.363 -2.194 -1.523 5.992 Atomic orbital electron populations 1.81012 1.13341 1.10583 1.18030 1.25551 0.92622 0.91498 0.90633 1.15839 0.83241 0.96888 1.43127 1.16970 0.85920 0.82559 0.74877 1.43410 1.10822 1.12318 1.74929 1.90674 1.13733 1.85934 1.58105 1.21362 0.94738 0.86691 0.88437 1.21274 0.88072 0.96763 1.04600 1.22707 0.95100 0.94071 1.04264 1.22662 0.88900 0.91046 1.01346 1.43285 1.10577 1.05501 1.47930 1.20611 0.91422 1.05012 1.36056 0.89894 1.27809 1.02756 0.92887 0.98369 1.70827 1.28418 1.40275 1.09040 0.82965 0.72587 0.76676 0.74743 1.20902 1.17882 1.19311 0.77437 0.76072 0.88272 0.88519 0.86457 0.89101 0.90738 0.91555 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -27.73 18.22 19.00 0.35 -27.38 15 2 C 0.30 14.56 11.10 88.33 0.98 15.54 15 3 C -0.37 -16.21 5.90 -19.83 -0.12 -16.33 15 4 C 0.60 23.49 8.01 86.51 0.69 24.18 15 5 N -0.85 -26.22 8.83 -176.23 -1.56 -27.77 15 6 O -0.60 -24.47 14.99 -4.30 -0.06 -24.53 15 7 C 0.22 9.51 6.57 42.07 0.28 9.78 15 8 C -0.07 -2.27 4.97 30.51 0.15 -2.12 15 9 C -0.12 -3.36 7.16 31.50 0.23 -3.14 15 10 C 0.08 3.04 5.43 86.67 0.47 3.51 15 11 N -0.40 -17.89 2.86 -498.98 -1.43 -19.31 15 12 C -0.40 -20.49 8.02 84.16 0.68 -19.82 15 13 H 0.08 4.55 6.44 -2.91 -0.02 4.53 15 14 C -0.01 -0.46 5.10 84.98 0.43 -0.03 15 15 N -0.86 -44.24 13.04 21.69 0.28 -43.96 15 16 Si 1.11 45.34 29.99 68.60 2.06 47.39 15 17 H -0.28 -11.89 7.11 99.48 0.71 -11.18 15 18 H -0.25 -9.39 7.11 99.48 0.71 -8.68 15 19 H -0.27 -10.68 7.11 99.48 0.71 -9.97 15 20 H 0.40 11.99 7.70 -92.71 -0.71 11.28 15 21 H 0.41 10.04 8.93 -92.71 -0.83 9.21 15 22 H 0.10 3.19 7.59 -2.39 -0.02 3.17 15 23 H 0.10 3.12 7.81 -2.39 -0.02 3.10 15 24 H 0.12 2.41 8.14 -2.39 -0.02 2.39 15 25 H 0.09 2.20 8.14 -2.39 -0.02 2.19 15 26 H 0.07 2.83 8.05 -2.39 -0.02 2.81 15 27 H 0.07 2.48 7.04 -2.39 -0.02 2.46 15 28 H 0.27 14.18 6.33 -92.70 -0.59 13.59 15 Total: -1.00 -62.38 247.67 3.29 -59.09 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: -0.14 Total: 24.89 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 3.79 Total: 11.58 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -2.35 Total: -118.42 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.06 Total: -24.53 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.06 Total: 47.39 kcal Total: -62.38 3.29 -59.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033593581.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.772 kcal (2) G-P(sol) polarization free energy of solvation -62.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds