Wall clock time and date at job start Mon Mar 30 2020 02:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35452 * 116.99670 * 2 1 4 4 C 1.39223 * 119.48660 * 180.02562 * 3 2 1 5 5 C 1.36875 * 119.42269 * 179.97438 * 4 3 2 6 6 C 1.40549 * 118.44837 * 359.97438 * 5 4 3 7 7 C 1.46885 * 120.52263 * 180.02562 * 6 5 4 8 8 O 1.21291 * 119.99855 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.99941 * 180.02562 * 7 6 5 10 10 C 1.50703 * 109.46639 * 180.02562 * 9 7 6 11 11 H 1.08000 * 120.00557 * 359.97438 * 10 9 7 12 12 C 1.37880 * 119.99865 * 180.02562 * 10 9 7 13 13 N 1.31521 * 119.99857 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00276 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47123 * 60.00005 * 14 12 10 16 16 H 1.48500 * 109.47562 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47127 * 299.99903 * 14 12 10 18 18 C 1.39852 * 118.96009 * 0.02562 * 6 5 4 19 19 N 1.31642 * 120.45705 * 359.97438 * 18 6 5 20 20 H 1.08999 * 109.46683 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46954 * 299.99764 * 1 2 3 22 22 H 1.08996 * 109.47056 * 60.00048 * 1 2 3 23 23 H 1.08004 * 120.28629 * 0.24981 * 4 3 2 24 24 H 1.08001 * 120.77467 * 180.02562 * 5 4 3 25 25 H 1.09000 * 109.47345 * 300.00054 * 9 7 6 26 26 H 1.08994 * 109.47600 * 60.00457 * 9 7 6 27 27 H 0.96999 * 120.00189 * 180.02562 * 13 12 10 28 28 H 1.08001 * 119.77606 * 179.97438 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0439 1.2069 0.0000 4 6 3.4349 1.2674 -0.0005 5 6 4.0548 2.4877 -0.0011 6 6 3.2563 3.6443 -0.0016 7 6 3.8738 4.9771 -0.0028 8 8 5.0819 5.0858 -0.0037 9 6 3.0064 6.2094 -0.0027 10 6 3.8792 7.4379 -0.0047 11 1 4.9544 7.3366 -0.0054 12 6 3.3050 8.6915 -0.0044 13 7 1.9956 8.8150 -0.0031 14 14 4.3868 10.2144 -0.0061 15 1 5.2428 10.2121 -1.2195 16 1 3.5321 11.4288 -0.0062 17 1 5.2454 10.2129 1.2055 18 6 1.8646 3.5064 -0.0010 19 7 1.3125 2.3114 -0.0005 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 4.0195 0.3593 -0.0050 24 1 5.1324 2.5601 -0.0019 25 1 2.3764 6.2103 -0.8922 26 1 2.3778 6.2113 0.8877 27 1 1.5916 9.6969 -0.0033 28 1 1.2385 4.3864 -0.0010 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034500741.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:55 Heat of formation + Delta-G solvation = -44.810205 kcal Electronic energy + Delta-G solvation = -14071.055593 eV Core-core repulsion = 11473.644611 eV Total energy + Delta-G solvation = -2597.410982 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.60167 -38.61901 -37.28660 -33.03757 -32.43853 -31.13991 -28.89767 -27.31878 -24.48309 -23.55932 -22.42611 -19.34460 -18.41968 -17.04318 -16.34722 -16.06427 -15.55832 -14.70698 -14.45768 -14.23126 -14.11031 -13.24494 -13.21802 -13.04923 -12.60406 -12.05506 -11.91267 -11.31799 -11.10822 -10.85547 -10.64332 -10.07352 -9.87505 -9.63607 -9.31612 -8.58809 -8.47745 -8.38341 -6.08632 -4.09411 0.89353 1.34671 3.02785 3.10765 3.35008 3.37792 3.42735 4.07847 4.35241 4.42231 4.82789 5.05957 5.12261 5.14769 5.23350 5.28836 5.29406 5.54264 5.73829 5.93835 6.19652 6.45350 6.67944 7.15628 7.17587 7.28251 7.85041 7.90469 8.17356 8.58875 8.99372 9.55746 11.03367 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.058489 B = 0.005857 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.604217 B = 4779.572615 C = 5237.730482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.309 6.309 3 C 0.330 3.670 4 C -0.204 4.204 5 C 0.002 3.998 6 C -0.245 4.245 7 C 0.399 3.601 8 O -0.462 6.462 9 C -0.022 4.022 10 C -0.518 4.518 11 H 0.072 0.928 12 C 0.057 3.943 13 N -0.899 5.899 14 Si 0.900 3.100 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.189 3.811 19 N -0.548 5.548 20 H 0.094 0.906 21 H 0.060 0.940 22 H 0.060 0.940 23 H 0.141 0.859 24 H 0.148 0.852 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.263 0.737 28 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.857 -14.809 0.006 15.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.216 6.216 3 C 0.151 3.849 4 C -0.224 4.224 5 C -0.023 4.023 6 C -0.248 4.248 7 C 0.277 3.723 8 O -0.337 6.337 9 C -0.059 4.059 10 C -0.556 4.556 11 H 0.091 0.909 12 C -0.144 4.144 13 N -0.538 5.538 14 Si 0.728 3.272 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.201 1.201 18 C 0.033 3.967 19 N -0.272 5.272 20 H 0.112 0.888 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.159 0.841 24 H 0.166 0.834 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -3.170 -14.982 0.005 15.314 hybrid contribution 0.934 0.963 -0.001 1.342 sum -2.235 -14.019 0.005 14.196 Atomic orbital electron populations 1.22874 0.77177 1.02747 1.02805 1.86170 1.23049 1.24914 1.87434 1.20126 0.89500 0.84795 0.90443 1.20721 0.91784 0.99619 1.10322 1.21459 1.01258 0.90404 0.89144 1.22029 0.95629 0.97613 1.09538 1.23112 0.90064 0.89114 0.70038 1.90376 1.17462 1.89130 1.36766 1.19560 0.96240 0.90387 0.99676 1.21127 0.94011 0.89633 1.50845 0.90947 1.24995 0.95078 0.99279 0.95021 1.69938 1.09222 1.23906 1.50720 0.86516 0.80211 0.81634 0.78859 1.20117 1.21312 1.20112 1.23062 0.92233 0.93651 0.87739 1.67430 1.40469 0.98801 1.20497 0.88781 0.92103 0.92111 0.84070 0.83419 0.92655 0.92654 0.92762 0.80602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.37 101.05 1.05 1.43 15 2 O -0.31 -4.00 10.46 -18.05 -0.19 -4.19 15 3 C 0.33 4.84 7.49 -16.91 -0.13 4.72 15 4 C -0.20 -2.79 9.97 -39.71 -0.40 -3.19 15 5 C 0.00 0.04 9.66 -39.20 -0.38 -0.34 15 6 C -0.24 -4.35 5.88 -104.92 -0.62 -4.97 15 7 C 0.40 8.72 7.11 -30.81 -0.22 8.50 15 8 O -0.46 -11.20 15.51 5.55 0.09 -11.11 15 9 C -0.02 -0.54 4.08 -29.04 -0.12 -0.66 15 10 C -0.52 -14.65 8.92 -34.44 -0.31 -14.96 15 11 H 0.07 2.11 6.75 -52.49 -0.35 1.76 15 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 13 N -0.90 -25.87 13.29 55.43 0.74 -25.13 15 14 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 15 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 18 C 0.19 3.11 10.65 -17.03 -0.18 2.93 15 19 N -0.55 -8.61 9.18 -12.87 -0.12 -8.72 15 20 H 0.09 0.64 8.14 -51.93 -0.42 0.22 15 21 H 0.06 0.61 8.10 -51.93 -0.42 0.19 15 22 H 0.06 0.61 8.10 -51.93 -0.42 0.19 15 23 H 0.14 1.54 8.06 -52.48 -0.42 1.12 15 24 H 0.15 2.12 7.73 -52.49 -0.41 1.71 15 25 H 0.06 1.36 8.09 -51.93 -0.42 0.94 15 26 H 0.06 1.36 8.09 -51.93 -0.42 0.94 15 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 28 H 0.18 2.75 7.07 -52.49 -0.37 2.38 15 LS Contribution 257.33 15.07 3.88 3.88 Total: -1.00 -31.26 257.33 -4.81 -36.08 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: -2.79 Total: -2.53 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -1.39 Total: -5.02 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.62 Total: -33.86 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.10 Total: -15.30 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.26 -4.81 -36.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034500741.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.734 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds