Wall clock time and date at job start Mon Mar 30 2020 02:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35452 * 116.99670 * 2 1 4 4 C 1.39223 * 119.48660 * 180.02562 * 3 2 1 5 5 C 1.36875 * 119.42269 * 179.97438 * 4 3 2 6 6 C 1.40549 * 118.44837 * 359.97438 * 5 4 3 7 7 C 1.46885 * 120.52263 * 180.02562 * 6 5 4 8 8 O 1.21291 * 119.99855 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.99941 * 180.02562 * 7 6 5 10 10 C 1.50703 * 109.46639 * 180.02562 * 9 7 6 11 11 H 1.08000 * 120.00557 * 359.97438 * 10 9 7 12 12 C 1.37880 * 119.99865 * 180.02562 * 10 9 7 13 13 N 1.31521 * 119.99857 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00276 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47123 * 60.00005 * 14 12 10 16 16 H 1.48500 * 109.47562 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47127 * 299.99903 * 14 12 10 18 18 C 1.39852 * 118.96009 * 0.02562 * 6 5 4 19 19 N 1.31642 * 120.45705 * 359.97438 * 18 6 5 20 20 H 1.08999 * 109.46683 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46954 * 299.99764 * 1 2 3 22 22 H 1.08996 * 109.47056 * 60.00048 * 1 2 3 23 23 H 1.08004 * 120.28629 * 0.24981 * 4 3 2 24 24 H 1.08001 * 120.77467 * 180.02562 * 5 4 3 25 25 H 1.09000 * 109.47345 * 300.00054 * 9 7 6 26 26 H 1.08994 * 109.47600 * 60.00457 * 9 7 6 27 27 H 0.96999 * 120.00189 * 180.02562 * 13 12 10 28 28 H 1.08001 * 119.77606 * 179.97438 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0439 1.2069 0.0000 4 6 3.4349 1.2674 -0.0005 5 6 4.0548 2.4877 -0.0011 6 6 3.2563 3.6443 -0.0016 7 6 3.8738 4.9771 -0.0028 8 8 5.0819 5.0858 -0.0037 9 6 3.0064 6.2094 -0.0027 10 6 3.8792 7.4379 -0.0047 11 1 4.9544 7.3366 -0.0054 12 6 3.3050 8.6915 -0.0044 13 7 1.9956 8.8150 -0.0031 14 14 4.3868 10.2144 -0.0061 15 1 5.2428 10.2121 -1.2195 16 1 3.5321 11.4288 -0.0062 17 1 5.2454 10.2129 1.2055 18 6 1.8646 3.5064 -0.0010 19 7 1.3125 2.3114 -0.0005 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 4.0195 0.3593 -0.0050 24 1 5.1324 2.5601 -0.0019 25 1 2.3764 6.2103 -0.8922 26 1 2.3778 6.2113 0.8877 27 1 1.5916 9.6969 -0.0033 28 1 1.2385 4.3864 -0.0010 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034500741.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:55 Heat of formation + Delta-G solvation = -66.386705 kcal Electronic energy + Delta-G solvation = -14071.991221 eV Core-core repulsion = 11473.644611 eV Total energy + Delta-G solvation = -2598.346609 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.81694 -40.12086 -38.59706 -35.13006 -33.67590 -32.59735 -30.66765 -28.35218 -26.19418 -24.94571 -23.82806 -20.95480 -19.51279 -18.67270 -17.96932 -17.26522 -17.09170 -16.57012 -15.79391 -15.72869 -15.42122 -14.88381 -14.49012 -14.28736 -14.04975 -13.82720 -13.21409 -12.83402 -12.75727 -12.57013 -12.16995 -12.08360 -11.45606 -11.08593 -10.87072 -10.61200 -10.32883 -9.62408 -8.23798 -6.31870 -0.44025 0.15740 1.41198 1.43211 1.51841 1.54418 2.00954 2.41046 2.74594 3.11465 3.15237 3.35413 3.86289 3.91868 4.05880 4.45149 4.46593 4.59591 4.61950 4.77215 4.87712 5.06146 5.25252 5.27970 5.29105 5.71954 6.08039 6.12424 6.61921 6.77298 6.86417 7.36899 8.87697 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.058489 B = 0.005857 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.604217 B = 4779.572615 C = 5237.730482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.307 6.307 3 C 0.332 3.668 4 C -0.192 4.192 5 C 0.007 3.993 6 C -0.266 4.266 7 C 0.408 3.592 8 O -0.494 6.494 9 C -0.022 4.022 10 C -0.546 4.546 11 H 0.057 0.943 12 C 0.012 3.988 13 N -0.923 5.923 14 Si 0.961 3.039 15 H -0.272 1.272 16 H -0.276 1.276 17 H -0.272 1.272 18 C 0.194 3.806 19 N -0.556 5.556 20 H 0.130 0.870 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.176 0.824 24 H 0.158 0.842 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.267 0.733 28 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.927 -16.256 0.006 16.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.214 6.214 3 C 0.153 3.847 4 C -0.212 4.212 5 C -0.018 4.018 6 C -0.269 4.269 7 C 0.288 3.712 8 O -0.372 6.372 9 C -0.058 4.058 10 C -0.584 4.584 11 H 0.075 0.925 12 C -0.187 4.187 13 N -0.562 5.562 14 Si 0.785 3.215 15 H -0.197 1.197 16 H -0.201 1.201 17 H -0.197 1.197 18 C 0.037 3.963 19 N -0.280 5.280 20 H 0.148 0.852 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.194 0.806 24 H 0.175 0.825 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.262 -16.454 0.005 16.774 hybrid contribution 0.848 1.264 -0.001 1.522 sum -2.414 -15.189 0.005 15.380 Atomic orbital electron populations 1.23166 0.75428 1.05077 1.02546 1.86194 1.24741 1.23690 1.86729 1.20468 0.90177 0.85053 0.89008 1.21007 0.91633 1.00084 1.08496 1.21578 1.01640 0.90160 0.88422 1.21562 0.96275 0.96044 1.13044 1.22899 0.89206 0.90186 0.68894 1.90351 1.18401 1.89729 1.38748 1.19459 0.96135 0.91083 0.99166 1.21414 0.93824 0.91602 1.51540 0.92515 1.25769 0.96424 1.02072 0.94457 1.70018 1.10450 1.24794 1.50964 0.85566 0.78673 0.78285 0.78927 1.19719 1.20084 1.19710 1.23007 0.91706 0.94198 0.87349 1.67462 1.40672 0.98766 1.21093 0.85245 0.92359 0.92367 0.80626 0.82479 0.93159 0.93158 0.92399 0.80666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.37 113.37 1.18 1.72 15 2 O -0.31 -7.00 10.46 -87.50 -0.92 -7.91 15 3 C 0.33 8.91 7.49 84.83 0.64 9.55 15 4 C -0.19 -4.69 9.97 22.19 0.22 -4.47 15 5 C 0.01 0.19 9.66 22.51 0.22 0.41 15 6 C -0.27 -9.39 5.88 -20.06 -0.12 -9.50 15 7 C 0.41 18.22 7.11 27.95 0.20 18.41 15 8 O -0.49 -24.51 15.51 -3.06 -0.05 -24.55 15 9 C -0.02 -1.10 4.08 29.10 0.12 -0.98 15 10 C -0.55 -31.62 8.92 25.60 0.23 -31.40 15 11 H 0.06 3.40 6.75 -2.91 -0.02 3.38 15 12 C 0.01 0.67 5.46 84.65 0.46 1.13 15 13 N -0.92 -53.54 13.29 21.45 0.28 -53.25 15 14 Si 0.96 44.77 29.54 68.60 2.03 46.80 15 15 H -0.27 -12.44 7.11 99.48 0.71 -11.73 15 16 H -0.28 -12.25 7.11 99.48 0.71 -11.54 15 17 H -0.27 -12.43 7.11 99.48 0.71 -11.73 15 18 C 0.19 6.31 10.65 85.11 0.91 7.22 15 19 N -0.56 -16.65 9.18 -307.50 -2.82 -19.47 15 20 H 0.13 1.28 8.14 -2.39 -0.02 1.26 15 21 H 0.06 1.04 8.10 -2.38 -0.02 1.02 15 22 H 0.06 1.03 8.10 -2.39 -0.02 1.02 15 23 H 0.18 3.07 8.06 -2.91 -0.02 3.05 15 24 H 0.16 4.26 7.73 -2.91 -0.02 4.24 15 25 H 0.05 2.56 8.09 -2.39 -0.02 2.54 15 26 H 0.05 2.56 8.09 -2.39 -0.02 2.54 15 27 H 0.27 14.60 8.31 -92.71 -0.77 13.83 15 28 H 0.18 5.59 7.07 -2.91 -0.02 5.57 15 Total: -1.00 -66.60 257.33 3.74 -62.87 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: 1.17 Total: 3.44 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 4.05 Total: -7.91 kcal Atomic # 7 Polarization: -70.18 SS G_CDS: -2.54 Total: -72.72 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.96 Total: -32.47 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -66.60 3.74 -62.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034500741.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.521 kcal (2) G-P(sol) polarization free energy of solvation -66.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds