Wall clock time and date at job start Mon Mar 30 2020 04:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.40197 * 111.00410 * 2 1 4 4 C 1.39370 * 129.92971 * 319.77325 * 3 2 1 5 5 C 1.37930 * 120.23153 * 180.68408 * 4 3 2 6 6 C 1.38481 * 120.23442 * 0.02562 * 5 4 3 7 7 F 1.35105 * 120.08483 * 179.90123 * 6 5 4 8 8 C 1.38483 * 119.83123 * 359.87490 * 6 5 4 9 9 C 1.37934 * 120.06137 * 359.97438 * 8 6 5 10 10 C 1.51584 * 131.52431 * 180.29170 * 9 8 6 11 11 C 1.47909 * 111.00117 * 119.95203 * 2 1 3 12 12 H 1.08998 * 110.93694 * 329.26924 * 11 2 1 13 13 C 1.50697 * 110.78286 * 92.62851 * 11 2 1 14 14 H 1.08001 * 120.00083 * 28.34620 * 13 11 2 15 15 C 1.37877 * 120.00287 * 208.34855 * 13 11 2 16 16 N 1.31512 * 119.99704 * 354.51565 * 15 13 11 17 17 Si 1.86796 * 120.00155 * 174.51006 * 15 13 11 18 18 H 1.48495 * 109.47553 * 270.00467 * 17 15 13 19 19 H 1.48500 * 109.47012 * 30.00531 * 17 15 13 20 20 H 1.48502 * 109.46949 * 150.00076 * 17 15 13 21 21 H 1.08995 * 109.46867 * 305.27047 * 1 2 3 22 22 H 1.09002 * 109.47077 * 65.27249 * 1 2 3 23 23 H 1.08999 * 109.47319 * 185.27251 * 1 2 3 24 24 H 1.07999 * 119.88969 * 0.70127 * 4 3 2 25 25 H 1.07995 * 119.87866 * 179.97438 * 5 4 3 26 26 H 1.08001 * 119.96322 * 180.02562 * 8 6 5 27 27 H 1.08994 * 110.73297 * 45.67287 * 10 9 8 28 28 H 1.09002 * 110.88983 * 282.42234 * 10 9 8 29 29 H 0.96998 * 119.99965 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9715 1.3088 0.0000 4 6 1.5303 2.4364 -0.6902 5 6 2.1918 3.6387 -0.5510 6 6 3.2992 3.7338 0.2750 7 9 3.9460 4.9126 0.4076 8 6 3.7415 2.6178 0.9653 9 6 3.0802 1.4149 0.8305 10 6 3.3287 0.0560 1.4546 11 6 1.9990 -0.6894 1.1964 12 1 1.3217 -0.5768 2.0429 13 6 2.2510 -2.1466 0.9062 14 1 2.4921 -2.4634 -0.0978 15 6 2.1737 -3.0753 1.9223 16 7 1.9870 -2.6792 3.1623 17 14 2.3338 -4.8962 1.5374 18 1 0.9906 -5.4622 1.2536 19 1 3.2077 -5.0763 0.3504 20 1 2.9305 -5.5977 2.7024 21 1 -0.3633 0.5934 0.8390 22 1 -0.3633 0.4299 -0.9335 23 1 -0.3634 -1.0233 0.0944 24 1 0.6674 2.3687 -1.3361 25 1 1.8453 4.5088 -1.0889 26 1 4.6047 2.6897 1.6105 27 1 3.5165 0.1511 2.5240 28 1 4.1579 -0.4521 0.9621 29 1 1.9323 -3.3326 3.8771 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038312637.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:07 Heat of formation + Delta-G solvation = -13.265113 kcal Electronic energy + Delta-G solvation = -14603.193906 eV Core-core repulsion = 12019.523611 eV Total energy + Delta-G solvation = -2583.670295 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.42380 -39.89986 -35.94762 -32.89055 -31.92886 -29.03023 -28.48981 -25.10368 -24.87927 -21.77687 -20.83610 -20.12138 -16.73475 -16.60603 -16.03521 -15.77148 -15.15835 -14.63775 -14.15270 -13.77447 -13.46335 -12.69089 -12.51095 -12.31174 -12.07041 -11.93345 -11.72192 -11.08030 -10.87320 -10.76699 -10.43694 -10.28530 -9.99613 -9.66686 -8.89804 -8.64019 -8.45884 -6.90437 -6.21781 -4.26694 1.69013 1.70412 3.22122 3.29655 3.33553 4.01824 4.26455 4.57772 4.75082 5.11041 5.16936 5.29709 5.67960 5.74944 5.77443 6.02509 6.16165 6.18980 6.35439 6.46263 6.51829 6.59561 6.62179 6.91593 7.01585 7.25032 7.35748 7.68421 7.85888 7.93223 8.26538 8.85905 9.39570 10.85972 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.050710 B = 0.007468 C = 0.006854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.023249 B = 3748.364826 C = 4084.039934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.476 5.476 3 C 0.105 3.895 4 C -0.132 4.132 5 C -0.133 4.133 6 C 0.046 3.954 7 F -0.152 7.152 8 C -0.119 4.119 9 C -0.112 4.112 10 C -0.077 4.077 11 C 0.206 3.794 12 H 0.054 0.946 13 C -0.503 4.503 14 H 0.067 0.933 15 C 0.065 3.935 16 N -0.889 5.889 17 Si 0.901 3.099 18 H -0.279 1.279 19 H -0.271 1.271 20 H -0.286 1.286 21 H 0.028 0.972 22 H 0.056 0.944 23 H 0.078 0.922 24 H 0.123 0.877 25 H 0.127 0.873 26 H 0.126 0.874 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.835 7.809 -4.030 8.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.188 5.188 3 C 0.003 3.997 4 C -0.154 4.154 5 C -0.152 4.152 6 C 0.025 3.975 7 F -0.131 7.131 8 C -0.138 4.138 9 C -0.116 4.116 10 C -0.116 4.116 11 C 0.103 3.897 12 H 0.072 0.928 13 C -0.541 4.541 14 H 0.085 0.915 15 C -0.139 4.139 16 N -0.527 5.527 17 Si 0.729 3.271 18 H -0.205 1.205 19 H -0.196 1.196 20 H -0.212 1.212 21 H 0.046 0.954 22 H 0.075 0.925 23 H 0.097 0.903 24 H 0.141 0.859 25 H 0.145 0.855 26 H 0.144 0.856 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.745 7.373 -4.269 8.552 hybrid contribution -0.012 -0.368 0.449 0.581 sum -0.757 7.006 -3.820 8.015 Atomic orbital electron populations 1.22323 0.86973 1.02699 0.99643 1.60715 1.08054 1.07908 1.42106 1.20101 0.95875 0.89661 0.94040 1.20195 1.01789 0.90575 1.02825 1.20649 0.95816 0.98433 1.00298 1.17324 0.95623 0.81444 1.03065 1.91420 1.80966 1.45440 1.95243 1.20310 1.01166 0.91132 1.01242 1.20926 0.96767 0.95661 0.98214 1.21722 1.01785 0.88460 0.99603 1.20541 0.90778 0.93298 0.85079 0.92830 1.20917 1.47750 0.89820 0.95619 0.91458 1.25037 0.94386 0.99579 0.94859 1.69944 1.48670 1.34673 0.99366 0.86439 0.78444 0.84197 0.78063 1.20475 1.19583 1.21155 0.95379 0.92509 0.90275 0.85887 0.85460 0.85571 0.91198 0.90080 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.08 60.06 0.55 1.11 15 2 N -0.48 -10.27 4.97 -170.62 -0.85 -11.11 15 3 C 0.10 2.08 5.94 -83.35 -0.49 1.58 15 4 C -0.13 -2.21 9.54 -39.27 -0.37 -2.58 15 5 C -0.13 -2.07 10.00 -39.60 -0.40 -2.47 15 6 C 0.05 0.77 7.31 -39.40 -0.29 0.49 15 7 F -0.15 -2.49 17.27 2.25 0.04 -2.45 15 8 C -0.12 -2.13 10.01 -39.60 -0.40 -2.52 15 9 C -0.11 -2.26 6.23 -104.04 -0.65 -2.91 15 10 C -0.08 -1.73 6.56 -26.60 -0.17 -1.90 15 11 C 0.21 5.00 2.55 -67.46 -0.17 4.82 15 12 H 0.05 1.42 7.30 -51.93 -0.38 1.04 15 13 C -0.50 -13.19 8.66 -34.44 -0.30 -13.49 15 14 H 0.07 1.80 7.82 -52.49 -0.41 1.39 15 15 C 0.06 1.71 5.45 -17.82 -0.10 1.61 15 16 N -0.89 -24.34 12.94 55.43 0.72 -23.62 15 17 Si 0.90 20.40 29.54 -169.99 -5.02 15.37 15 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 20 H -0.29 -6.44 7.11 56.52 0.40 -6.04 15 21 H 0.03 0.50 8.11 -51.93 -0.42 0.08 15 22 H 0.06 0.88 7.57 -51.93 -0.39 0.49 15 23 H 0.08 1.51 8.13 -51.93 -0.42 1.09 15 24 H 0.12 1.76 7.53 -52.49 -0.40 1.37 15 25 H 0.13 1.62 8.06 -52.49 -0.42 1.19 15 26 H 0.13 2.02 8.06 -52.49 -0.42 1.60 15 27 H 0.07 1.55 8.14 -51.93 -0.42 1.13 15 28 H 0.08 1.83 7.91 -51.93 -0.41 1.42 15 29 H 0.27 6.90 8.31 -40.82 -0.34 6.56 15 LS Contribution 254.30 15.07 3.83 3.83 Total: -1.00 -27.14 254.30 -7.31 -34.45 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -3.23 Total: -0.21 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -2.79 Total: -16.26 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: -0.13 Total: -34.73 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.04 Total: -2.45 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -27.14 -7.31 -34.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038312637.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.183 kcal (2) G-P(sol) polarization free energy of solvation -27.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds