Wall clock time and date at job start Mon Mar 30 2020 04:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.40197 * 111.00410 * 2 1 4 4 C 1.39370 * 129.92971 * 319.77325 * 3 2 1 5 5 C 1.37930 * 120.23153 * 180.68408 * 4 3 2 6 6 C 1.38481 * 120.23442 * 0.02562 * 5 4 3 7 7 F 1.35105 * 120.08483 * 179.90123 * 6 5 4 8 8 C 1.38483 * 119.83123 * 359.87490 * 6 5 4 9 9 C 1.37934 * 120.06137 * 359.97438 * 8 6 5 10 10 C 1.51584 * 131.52431 * 180.29170 * 9 8 6 11 11 C 1.47909 * 111.00117 * 119.95203 * 2 1 3 12 12 H 1.08998 * 110.93694 * 329.26924 * 11 2 1 13 13 C 1.50697 * 110.78286 * 92.62851 * 11 2 1 14 14 H 1.08001 * 120.00083 * 28.34620 * 13 11 2 15 15 C 1.37877 * 120.00287 * 208.34855 * 13 11 2 16 16 N 1.31512 * 119.99704 * 354.51565 * 15 13 11 17 17 Si 1.86796 * 120.00155 * 174.51006 * 15 13 11 18 18 H 1.48495 * 109.47553 * 270.00467 * 17 15 13 19 19 H 1.48500 * 109.47012 * 30.00531 * 17 15 13 20 20 H 1.48502 * 109.46949 * 150.00076 * 17 15 13 21 21 H 1.08995 * 109.46867 * 305.27047 * 1 2 3 22 22 H 1.09002 * 109.47077 * 65.27249 * 1 2 3 23 23 H 1.08999 * 109.47319 * 185.27251 * 1 2 3 24 24 H 1.07999 * 119.88969 * 0.70127 * 4 3 2 25 25 H 1.07995 * 119.87866 * 179.97438 * 5 4 3 26 26 H 1.08001 * 119.96322 * 180.02562 * 8 6 5 27 27 H 1.08994 * 110.73297 * 45.67287 * 10 9 8 28 28 H 1.09002 * 110.88983 * 282.42234 * 10 9 8 29 29 H 0.96998 * 119.99965 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9715 1.3088 0.0000 4 6 1.5303 2.4364 -0.6902 5 6 2.1918 3.6387 -0.5510 6 6 3.2992 3.7338 0.2750 7 9 3.9460 4.9126 0.4076 8 6 3.7415 2.6178 0.9653 9 6 3.0802 1.4149 0.8305 10 6 3.3287 0.0560 1.4546 11 6 1.9990 -0.6894 1.1964 12 1 1.3217 -0.5768 2.0429 13 6 2.2510 -2.1466 0.9062 14 1 2.4921 -2.4634 -0.0978 15 6 2.1737 -3.0753 1.9223 16 7 1.9870 -2.6792 3.1623 17 14 2.3338 -4.8962 1.5374 18 1 0.9906 -5.4622 1.2536 19 1 3.2077 -5.0763 0.3504 20 1 2.9305 -5.5977 2.7024 21 1 -0.3633 0.5934 0.8390 22 1 -0.3633 0.4299 -0.9335 23 1 -0.3634 -1.0233 0.0944 24 1 0.6674 2.3687 -1.3361 25 1 1.8453 4.5088 -1.0889 26 1 4.6047 2.6897 1.6105 27 1 3.5165 0.1511 2.5240 28 1 4.1579 -0.4521 0.9621 29 1 1.9323 -3.3326 3.8771 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038312637.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:07 Heat of formation + Delta-G solvation = -28.423821 kcal Electronic energy + Delta-G solvation = -14603.851237 eV Core-core repulsion = 12019.523611 eV Total energy + Delta-G solvation = -2584.327626 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.74497 -41.43518 -37.46549 -34.79691 -33.51317 -30.46739 -30.18656 -26.94746 -26.40025 -23.35942 -22.31084 -21.75814 -18.68121 -17.99772 -17.55634 -17.27507 -16.53326 -16.40175 -15.81163 -15.21548 -14.98077 -14.21277 -13.99954 -13.79394 -13.66580 -13.56783 -13.37666 -12.87904 -12.58475 -12.46370 -12.13498 -11.90365 -11.70061 -11.46970 -10.63641 -10.52368 -9.86314 -8.49103 -8.20128 -6.34166 0.28493 0.32087 1.42319 1.43651 1.54596 2.38001 2.59749 2.93880 3.27482 3.33715 3.73501 4.00877 4.19373 4.29703 4.38569 4.52451 4.62323 4.67672 4.78935 4.96547 4.99699 5.12836 5.20530 5.23551 5.28285 5.58640 5.66902 5.86554 6.06761 6.25308 6.52749 6.81660 7.35519 8.85301 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.050710 B = 0.007468 C = 0.006854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.023249 B = 3748.364826 C = 4084.039934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.490 5.490 3 C 0.082 3.918 4 C -0.121 4.121 5 C -0.117 4.117 6 C 0.047 3.953 7 F -0.146 7.146 8 C -0.122 4.122 9 C -0.136 4.136 10 C -0.072 4.072 11 C 0.207 3.793 12 H 0.021 0.979 13 C -0.516 4.516 14 H 0.057 0.943 15 C 0.020 3.980 16 N -0.921 5.921 17 Si 0.964 3.036 18 H -0.272 1.272 19 H -0.268 1.268 20 H -0.282 1.282 21 H 0.028 0.972 22 H 0.092 0.908 23 H 0.063 0.937 24 H 0.154 0.846 25 H 0.168 0.832 26 H 0.138 0.862 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.272 9.154 -5.555 10.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.202 5.202 3 C -0.019 4.019 4 C -0.142 4.142 5 C -0.136 4.136 6 C 0.027 3.973 7 F -0.125 7.125 8 C -0.141 4.141 9 C -0.139 4.139 10 C -0.110 4.110 11 C 0.103 3.897 12 H 0.039 0.961 13 C -0.554 4.554 14 H 0.075 0.925 15 C -0.181 4.181 16 N -0.560 5.560 17 Si 0.789 3.211 18 H -0.198 1.198 19 H -0.192 1.192 20 H -0.208 1.208 21 H 0.047 0.953 22 H 0.110 0.890 23 H 0.082 0.918 24 H 0.172 0.828 25 H 0.185 0.815 26 H 0.156 0.844 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.181 8.743 -5.810 10.564 hybrid contribution 0.132 -0.629 0.896 1.103 sum -1.050 8.114 -4.914 9.544 Atomic orbital electron populations 1.22379 0.85509 1.02147 1.01476 1.60648 1.09605 1.09261 1.40693 1.20316 0.96189 0.89911 0.95453 1.20526 1.02276 0.89462 1.01898 1.21067 0.94330 0.99224 0.98959 1.17427 0.95918 0.81163 1.02813 1.91443 1.80942 1.44924 1.95188 1.20425 1.01418 0.90741 1.01501 1.20742 0.98234 0.95280 0.99678 1.21434 1.00433 0.90283 0.98874 1.20279 0.91032 0.93161 0.85269 0.96123 1.21106 1.47846 0.91298 0.95149 0.92466 1.25775 0.94075 1.03613 0.94595 1.70051 1.49807 1.35938 1.00158 0.85460 0.78579 0.79202 0.77857 1.19782 1.19246 1.20770 0.95342 0.88973 0.91820 0.82846 0.81481 0.84416 0.92513 0.91375 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.13 9.08 127.69 1.16 2.29 15 2 N -0.49 -21.15 4.97 -693.72 -3.45 -24.59 15 3 C 0.08 3.15 5.94 38.24 0.23 3.37 15 4 C -0.12 -3.59 9.54 22.47 0.21 -3.37 15 5 C -0.12 -3.12 10.00 22.25 0.22 -2.90 15 6 C 0.05 1.45 7.31 22.39 0.16 1.61 15 7 F -0.15 -4.30 17.27 44.97 0.78 -3.52 15 8 C -0.12 -4.18 10.01 22.26 0.22 -3.96 15 9 C -0.14 -5.47 6.23 -19.49 -0.12 -5.59 15 10 C -0.07 -3.34 6.56 30.68 0.20 -3.14 15 11 C 0.21 10.41 2.55 44.52 0.11 10.52 15 12 H 0.02 1.16 7.30 -2.39 -0.02 1.15 15 13 C -0.52 -27.90 8.66 25.60 0.22 -27.68 15 14 H 0.06 3.14 7.82 -2.91 -0.02 3.12 15 15 C 0.02 1.06 5.45 84.66 0.46 1.52 15 16 N -0.92 -51.96 12.94 21.45 0.28 -51.68 15 17 Si 0.96 42.40 29.54 68.60 2.03 44.43 15 18 H -0.27 -11.62 7.11 99.48 0.71 -10.91 15 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 15 20 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 21 H 0.03 1.00 8.11 -2.39 -0.02 0.98 15 22 H 0.09 2.63 7.57 -2.39 -0.02 2.62 15 23 H 0.06 2.46 8.13 -2.39 -0.02 2.44 15 24 H 0.15 3.62 7.53 -2.91 -0.02 3.60 15 25 H 0.17 3.20 8.06 -2.91 -0.02 3.18 15 26 H 0.14 4.28 8.06 -2.91 -0.02 4.26 15 27 H 0.06 2.68 8.14 -2.39 -0.02 2.66 15 28 H 0.07 3.24 7.91 -2.39 -0.02 3.22 15 29 H 0.27 14.23 8.31 -92.71 -0.77 13.46 15 Total: -1.00 -59.08 254.30 3.87 -55.22 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 1.15 Total: 7.48 kcal Atomic # 6 Polarization: -30.41 SS G_CDS: 3.09 Total: -27.33 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -3.17 Total: -76.28 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.78 Total: -3.52 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -59.08 3.87 -55.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038312637.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.793 kcal (2) G-P(sol) polarization free energy of solvation -59.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds