Wall clock time and date at job start Mon Mar 30 2020 04:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.40197 * 111.00195 * 2 1 4 4 C 1.39375 * 129.92276 * 283.69248 * 3 2 1 5 5 C 1.37922 * 120.22668 * 179.30706 * 4 3 2 6 6 C 1.38485 * 120.23676 * 0.51918 * 5 4 3 7 7 F 1.35104 * 120.08187 * 179.89285 * 6 5 4 8 8 C 1.38474 * 119.83080 * 359.62074 * 6 5 4 9 9 C 1.37945 * 120.06592 * 0.20204 * 8 6 5 10 10 C 1.51570 * 131.53391 * 179.58788 * 9 8 6 11 11 C 1.47910 * 110.99567 * 119.95587 * 2 1 3 12 12 H 1.09004 * 110.93669 * 147.08892 * 11 2 1 13 13 C 1.50701 * 110.77945 * 23.73020 * 11 2 1 14 14 H 1.07998 * 120.00095 * 246.78645 * 13 11 2 15 15 C 1.37875 * 119.99907 * 66.79062 * 13 11 2 16 16 N 1.31516 * 120.00051 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00012 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47008 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47081 * 120.00207 * 17 15 13 20 20 H 1.48499 * 109.47341 * 240.00166 * 17 15 13 21 21 H 1.09005 * 109.46859 * 300.04987 * 1 2 3 22 22 H 1.09007 * 109.47158 * 60.04298 * 1 2 3 23 23 H 1.08998 * 109.47291 * 180.02562 * 1 2 3 24 24 H 1.07995 * 119.88482 * 359.53264 * 4 3 2 25 25 H 1.08004 * 119.87761 * 180.26565 * 5 4 3 26 26 H 1.08002 * 119.96453 * 180.17533 * 8 6 5 27 27 H 1.09000 * 110.73982 * 314.60253 * 10 9 8 28 28 H 1.08999 * 110.73839 * 77.74154 * 10 9 8 29 29 H 0.97004 * 119.99690 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9715 1.3088 0.0000 4 6 2.0559 2.2345 -1.0385 5 6 2.5813 3.4890 -0.8095 6 6 3.0387 3.8339 0.4514 7 9 3.5548 5.0629 0.6717 8 6 2.9604 2.9180 1.4869 9 6 2.4320 1.6638 1.2618 10 6 2.2320 0.4773 2.1835 11 6 1.9990 -0.6895 1.1964 12 1 2.9365 -1.1975 0.9700 13 6 0.9863 -1.6608 1.7462 14 1 0.5358 -1.4826 2.7114 15 6 0.6351 -2.7770 1.0169 16 7 1.1842 -2.9943 -0.1582 17 14 -0.6196 -3.9813 1.6987 18 1 -1.0836 -3.5125 3.0291 19 1 -1.7776 -4.0667 0.7729 20 1 0.0045 -5.3218 1.8357 21 1 -0.3633 0.5146 0.8896 22 1 -0.3634 0.5132 -0.8904 23 1 -0.3634 -1.0276 0.0005 24 1 1.7052 1.9699 -2.0251 25 1 2.6401 4.2034 -1.6173 26 1 3.3139 3.1857 2.4717 27 1 3.1235 0.3014 2.7854 28 1 1.3608 0.6265 2.8213 29 1 0.9368 -3.7794 -0.6714 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038312639.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:11 Heat of formation + Delta-G solvation = -4.086696 kcal Electronic energy + Delta-G solvation = -14798.507707 eV Core-core repulsion = 12215.235418 eV Total energy + Delta-G solvation = -2583.272289 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.46012 -39.90003 -36.05245 -32.56522 -31.69160 -28.79760 -28.56198 -25.11505 -24.71217 -21.86555 -20.75967 -19.84156 -16.80748 -16.48652 -15.99307 -15.62843 -15.17400 -14.59948 -13.97116 -13.68937 -13.39317 -12.79776 -12.37574 -12.21022 -12.10856 -11.90480 -11.61646 -11.17923 -10.70289 -10.68109 -10.33609 -10.22413 -9.96746 -9.32480 -8.61189 -8.48974 -8.32002 -6.79546 -6.17486 -4.30186 1.68327 1.70855 3.18473 3.28595 3.31415 4.04861 4.26726 4.58533 4.77572 5.15711 5.24867 5.35698 5.71122 5.81488 5.98322 6.17057 6.28772 6.34642 6.50103 6.55102 6.60263 6.68504 6.74181 7.06220 7.19336 7.32381 7.52638 7.68107 7.86323 8.23474 8.51514 8.81740 9.37204 10.87353 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.064060 B = 0.007597 C = 0.007169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.982280 B = 3684.883061 C = 3904.662301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.478 5.478 3 C 0.109 3.891 4 C -0.107 4.107 5 C -0.139 4.139 6 C 0.053 3.947 7 F -0.151 7.151 8 C -0.126 4.126 9 C -0.121 4.121 10 C -0.105 4.105 11 C 0.213 3.787 12 H 0.061 0.939 13 C -0.538 4.538 14 H 0.064 0.936 15 C 0.076 3.924 16 N -0.854 5.854 17 Si 0.888 3.112 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.281 1.281 21 H 0.014 0.986 22 H 0.031 0.969 23 H 0.094 0.906 24 H 0.127 0.873 25 H 0.128 0.872 26 H 0.123 0.877 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.509 8.101 0.353 8.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.194 5.194 3 C 0.010 3.990 4 C -0.128 4.128 5 C -0.159 4.159 6 C 0.033 3.967 7 F -0.130 7.130 8 C -0.146 4.146 9 C -0.124 4.124 10 C -0.143 4.143 11 C 0.109 3.891 12 H 0.078 0.922 13 C -0.576 4.576 14 H 0.082 0.918 15 C -0.131 4.131 16 N -0.488 5.488 17 Si 0.715 3.285 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.207 1.207 21 H 0.033 0.967 22 H 0.050 0.950 23 H 0.113 0.887 24 H 0.145 0.855 25 H 0.146 0.854 26 H 0.141 0.859 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.644 7.650 -0.268 7.682 hybrid contribution -0.673 -0.042 0.930 1.149 sum -0.030 7.608 0.661 7.637 Atomic orbital electron populations 1.22026 0.85782 1.03538 0.96770 1.60479 1.08340 1.06703 1.43845 1.20318 0.95714 0.90882 0.92128 1.20323 1.01958 0.91980 0.98542 1.20728 1.02104 0.97515 0.95525 1.17342 1.03417 0.80959 0.94936 1.91422 1.85246 1.40805 1.95559 1.20253 1.02880 0.92971 0.98451 1.21264 1.00266 0.94371 0.96475 1.21952 1.01214 0.92755 0.98389 1.20301 0.97231 0.89448 0.82082 0.92166 1.21036 1.25292 1.06666 1.04648 0.91809 1.25037 0.96162 0.97224 0.94643 1.70096 1.40718 1.26904 1.11093 0.86607 0.81337 0.81214 0.79377 1.19549 1.20722 1.20721 0.96724 0.94977 0.88730 0.85525 0.85375 0.85865 0.91246 0.90645 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.42 8.44 60.07 0.51 1.93 15 2 N -0.48 -11.17 5.12 -170.61 -0.87 -12.05 15 3 C 0.11 2.25 5.59 -83.35 -0.47 1.79 15 4 C -0.11 -1.92 10.07 -39.27 -0.40 -2.31 15 5 C -0.14 -2.24 10.00 -39.61 -0.40 -2.64 15 6 C 0.05 0.90 7.31 -39.40 -0.29 0.61 15 7 F -0.15 -2.47 17.27 2.25 0.04 -2.43 15 8 C -0.13 -2.21 10.01 -39.60 -0.40 -2.60 15 9 C -0.12 -2.38 6.23 -104.04 -0.65 -3.03 15 10 C -0.10 -2.15 6.49 -26.62 -0.17 -2.33 15 11 C 0.21 5.15 3.11 -67.47 -0.21 4.94 15 12 H 0.06 1.61 8.14 -51.93 -0.42 1.18 15 13 C -0.54 -13.62 6.95 -34.44 -0.24 -13.86 15 14 H 0.06 1.60 7.62 -52.49 -0.40 1.20 15 15 C 0.08 1.95 3.76 -17.82 -0.07 1.89 15 16 N -0.85 -23.09 12.84 55.43 0.71 -22.37 15 17 Si 0.89 19.72 29.54 -169.99 -5.02 14.70 15 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 21 H 0.01 0.31 8.12 -51.93 -0.42 -0.11 15 22 H 0.03 0.64 8.14 -51.92 -0.42 0.22 15 23 H 0.09 2.30 5.31 -51.93 -0.28 2.02 15 24 H 0.13 2.07 8.06 -52.49 -0.42 1.64 15 25 H 0.13 1.69 8.06 -52.48 -0.42 1.26 15 26 H 0.12 1.90 8.06 -52.49 -0.42 1.47 15 27 H 0.07 1.31 8.14 -51.93 -0.42 0.89 15 28 H 0.08 1.53 7.79 -51.93 -0.40 1.13 15 29 H 0.26 6.78 8.31 -40.82 -0.34 6.44 15 LS Contribution 249.80 15.07 3.76 3.76 Total: -1.00 -26.60 249.80 -7.32 -33.92 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -3.17 Total: 0.07 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -2.77 Total: -15.61 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: -0.16 Total: -34.42 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -26.60 -7.32 -33.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038312639.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.836 kcal (2) G-P(sol) polarization free energy of solvation -26.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds