Wall clock time and date at job start Mon Mar 30 2020 04:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.40197 * 111.00195 * 2 1 4 4 C 1.39375 * 129.92276 * 283.69248 * 3 2 1 5 5 C 1.37922 * 120.22668 * 179.30706 * 4 3 2 6 6 C 1.38485 * 120.23676 * 0.51918 * 5 4 3 7 7 F 1.35104 * 120.08187 * 179.89285 * 6 5 4 8 8 C 1.38474 * 119.83080 * 359.62074 * 6 5 4 9 9 C 1.37945 * 120.06592 * 0.20204 * 8 6 5 10 10 C 1.51570 * 131.53391 * 179.58788 * 9 8 6 11 11 C 1.47910 * 110.99567 * 119.95587 * 2 1 3 12 12 H 1.09004 * 110.93669 * 147.08892 * 11 2 1 13 13 C 1.50701 * 110.77945 * 23.73020 * 11 2 1 14 14 H 1.07998 * 120.00095 * 246.78645 * 13 11 2 15 15 C 1.37875 * 119.99907 * 66.79062 * 13 11 2 16 16 N 1.31516 * 120.00051 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00012 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47008 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47081 * 120.00207 * 17 15 13 20 20 H 1.48499 * 109.47341 * 240.00166 * 17 15 13 21 21 H 1.09005 * 109.46859 * 300.04987 * 1 2 3 22 22 H 1.09007 * 109.47158 * 60.04298 * 1 2 3 23 23 H 1.08998 * 109.47291 * 180.02562 * 1 2 3 24 24 H 1.07995 * 119.88482 * 359.53264 * 4 3 2 25 25 H 1.08004 * 119.87761 * 180.26565 * 5 4 3 26 26 H 1.08002 * 119.96453 * 180.17533 * 8 6 5 27 27 H 1.09000 * 110.73982 * 314.60253 * 10 9 8 28 28 H 1.08999 * 110.73839 * 77.74154 * 10 9 8 29 29 H 0.97004 * 119.99690 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9715 1.3088 0.0000 4 6 2.0559 2.2345 -1.0385 5 6 2.5813 3.4890 -0.8095 6 6 3.0387 3.8339 0.4514 7 9 3.5548 5.0629 0.6717 8 6 2.9604 2.9180 1.4869 9 6 2.4320 1.6638 1.2618 10 6 2.2320 0.4773 2.1835 11 6 1.9990 -0.6895 1.1964 12 1 2.9365 -1.1975 0.9700 13 6 0.9863 -1.6608 1.7462 14 1 0.5358 -1.4826 2.7114 15 6 0.6351 -2.7770 1.0169 16 7 1.1842 -2.9943 -0.1582 17 14 -0.6196 -3.9813 1.6987 18 1 -1.0836 -3.5125 3.0291 19 1 -1.7776 -4.0667 0.7729 20 1 0.0045 -5.3218 1.8357 21 1 -0.3633 0.5146 0.8896 22 1 -0.3634 0.5132 -0.8904 23 1 -0.3634 -1.0276 0.0005 24 1 1.7052 1.9699 -2.0251 25 1 2.6401 4.2034 -1.6173 26 1 3.3139 3.1857 2.4717 27 1 3.1235 0.3014 2.7854 28 1 1.3608 0.6265 2.8213 29 1 0.9368 -3.7794 -0.6714 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038312639.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:11 Heat of formation + Delta-G solvation = -18.899298 kcal Electronic energy + Delta-G solvation = -14799.150029 eV Core-core repulsion = 12215.235418 eV Total energy + Delta-G solvation = -2583.914611 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.77912 -41.46948 -37.61468 -34.46049 -33.22531 -30.33817 -30.22997 -26.89926 -26.40372 -23.41566 -22.21465 -21.54912 -18.61345 -17.94407 -17.51086 -17.20070 -16.51354 -16.41242 -15.60414 -15.24929 -14.92781 -14.30076 -13.99016 -13.78022 -13.68968 -13.57053 -13.31550 -12.88641 -12.44767 -12.35339 -11.96109 -11.85894 -11.75545 -11.18330 -10.53768 -9.95161 -9.84524 -8.43765 -8.13612 -6.31788 0.25423 0.31838 1.41623 1.46025 1.55658 2.40721 2.62283 2.96119 3.25432 3.47670 3.78359 3.98906 4.24174 4.36417 4.46273 4.55261 4.66908 4.77365 4.90984 4.99308 5.07240 5.18408 5.27322 5.39363 5.56471 5.56898 5.75677 5.88060 6.03712 6.46318 6.68768 6.96596 7.39122 8.92220 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.064060 B = 0.007597 C = 0.007169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.982280 B = 3684.883061 C = 3904.662301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.498 5.498 3 C 0.076 3.924 4 C -0.105 4.105 5 C -0.125 4.125 6 C 0.058 3.942 7 F -0.144 7.144 8 C -0.124 4.124 9 C -0.134 4.134 10 C -0.095 4.095 11 C 0.207 3.793 12 H 0.022 0.978 13 C -0.546 4.546 14 H 0.062 0.938 15 C 0.037 3.963 16 N -0.888 5.888 17 Si 0.949 3.051 18 H -0.266 1.266 19 H -0.278 1.278 20 H -0.282 1.282 21 H 0.013 0.987 22 H 0.050 0.950 23 H 0.069 0.931 24 H 0.141 0.859 25 H 0.165 0.835 26 H 0.145 0.855 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.334 9.754 0.373 9.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.214 5.214 3 C -0.022 4.022 4 C -0.126 4.126 5 C -0.144 4.144 6 C 0.038 3.962 7 F -0.123 7.123 8 C -0.143 4.143 9 C -0.137 4.137 10 C -0.134 4.134 11 C 0.103 3.897 12 H 0.040 0.960 13 C -0.584 4.584 14 H 0.080 0.920 15 C -0.167 4.167 16 N -0.523 5.523 17 Si 0.774 3.226 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.207 1.207 21 H 0.032 0.968 22 H 0.069 0.931 23 H 0.088 0.912 24 H 0.159 0.841 25 H 0.182 0.818 26 H 0.162 0.838 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.473 9.326 -0.239 9.341 hybrid contribution -0.553 -0.430 0.903 1.142 sum -0.080 8.897 0.664 8.922 Atomic orbital electron populations 1.21890 0.85745 1.02074 0.97559 1.60302 1.08704 1.08716 1.43679 1.20492 0.97454 0.90548 0.93695 1.20530 1.01594 0.92006 0.98430 1.21055 1.00018 0.97163 0.96207 1.17435 1.02692 0.80978 0.95072 1.91451 1.85039 1.40257 1.95540 1.20419 1.02046 0.92021 0.99825 1.21175 1.01637 0.95001 0.95843 1.21747 1.01699 0.92077 0.97854 1.20092 0.95349 0.90595 0.83672 0.95993 1.21239 1.25358 1.07273 1.04555 0.91988 1.25672 0.97624 0.98653 0.94716 1.70210 1.42273 1.27508 1.12353 0.85650 0.79135 0.78912 0.78857 1.18987 1.20389 1.20748 0.96847 0.93132 0.91242 0.84143 0.81779 0.83770 0.90118 0.90692 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 3.26 8.44 127.69 1.08 4.34 15 2 N -0.50 -23.55 5.12 -693.68 -3.56 -27.10 15 3 C 0.08 3.10 5.59 38.24 0.21 3.31 15 4 C -0.11 -3.52 10.07 22.47 0.23 -3.29 15 5 C -0.13 -3.56 10.00 22.25 0.22 -3.34 15 6 C 0.06 1.76 7.31 22.38 0.16 1.93 15 7 F -0.14 -4.14 17.27 44.97 0.78 -3.37 15 8 C -0.12 -4.02 10.01 22.26 0.22 -3.80 15 9 C -0.13 -5.13 6.23 -19.49 -0.12 -5.25 15 10 C -0.10 -3.93 6.49 30.67 0.20 -3.73 15 11 C 0.21 10.30 3.11 44.52 0.14 10.44 15 12 H 0.02 1.24 8.14 -2.38 -0.02 1.22 15 13 C -0.55 -28.21 6.95 25.60 0.18 -28.03 15 14 H 0.06 3.15 7.62 -2.91 -0.02 3.12 15 15 C 0.04 1.93 3.76 84.65 0.32 2.25 15 16 N -0.89 -49.22 12.84 21.45 0.28 -48.95 15 17 Si 0.95 40.93 29.54 68.60 2.03 42.96 15 18 H -0.27 -11.11 7.11 99.48 0.71 -10.41 15 19 H -0.28 -11.78 7.11 99.48 0.71 -11.07 15 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 15 21 H 0.01 0.57 8.12 -2.38 -0.02 0.55 15 22 H 0.05 2.00 8.14 -2.38 -0.02 1.98 15 23 H 0.07 3.44 5.31 -2.39 -0.01 3.43 15 24 H 0.14 4.24 8.06 -2.91 -0.02 4.22 15 25 H 0.16 3.49 8.06 -2.91 -0.02 3.46 15 26 H 0.14 4.01 8.06 -2.91 -0.02 3.98 15 27 H 0.08 3.04 8.14 -2.39 -0.02 3.02 15 28 H 0.07 3.04 7.79 -2.39 -0.02 3.02 15 29 H 0.26 13.85 8.31 -92.70 -0.77 13.08 15 Total: -1.00 -56.91 249.80 3.51 -53.40 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 1.15 Total: 8.23 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 2.84 Total: -25.17 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -3.28 Total: -76.05 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.78 Total: -3.37 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -56.91 3.51 -53.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038312639.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.498 kcal (2) G-P(sol) polarization free energy of solvation -56.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds