Wall clock time and date at job start Mon Mar 30 2020 02:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34774 * 117.00312 * 2 1 4 4 O 1.21520 * 119.99549 * 359.97438 * 3 2 1 5 5 C 1.47383 * 119.99828 * 180.02562 * 3 2 1 6 6 C 1.39898 * 120.06546 * 0.31136 * 5 3 2 7 7 C 1.36600 * 119.93772 * 180.25831 * 6 5 3 8 8 C 1.39377 * 120.06150 * 359.44652 * 7 6 5 9 9 N 1.38746 * 119.93595 * 180.27940 * 8 7 6 10 10 C 1.36774 * 119.99888 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99911 * 359.97438 * 10 9 8 12 12 C 1.38889 * 120.00355 * 179.97438 * 10 9 8 13 13 N 1.31521 * 119.99697 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00351 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46705 * 90.00099 * 14 12 10 16 16 H 1.48498 * 109.47322 * 210.00151 * 14 12 10 17 17 H 1.48503 * 109.47297 * 330.00306 * 14 12 10 18 18 C 1.39370 * 120.12580 * 0.26326 * 8 7 6 19 19 C 1.36607 * 120.06211 * 0.02562 * 18 8 7 20 20 H 1.08987 * 109.47481 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46775 * 300.00565 * 1 2 3 22 22 H 1.08997 * 109.46740 * 59.99613 * 1 2 3 23 23 H 1.07998 * 120.02779 * 0.02562 * 6 5 3 24 24 H 1.08002 * 119.97137 * 179.73383 * 7 6 5 25 25 H 0.96998 * 120.00284 * 0.02562 * 9 8 7 26 26 H 0.96998 * 120.00175 * 180.02562 * 13 12 10 27 27 H 1.07999 * 119.97315 * 180.02562 * 18 8 7 28 28 H 1.07997 * 120.03003 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4021 2.2200 -0.0005 5 6 3.5358 1.2778 -0.0006 6 6 4.2989 0.1054 -0.0077 7 6 5.6629 0.1797 -0.0029 8 6 6.2944 1.4223 -0.0025 9 7 7.6799 1.4948 -0.0035 10 6 8.3009 2.7134 -0.0026 11 1 7.7128 3.6192 -0.0016 12 6 9.6879 2.7861 -0.0030 13 7 10.4042 1.6830 -0.0048 14 14 10.5361 4.4504 -0.0025 15 1 10.7613 4.8907 1.3977 16 1 11.8409 4.3413 -0.7031 17 1 9.6803 5.4424 -0.7018 18 6 5.5367 2.5920 -0.0015 19 6 4.1723 2.5235 -0.0004 20 1 -0.3634 -1.0275 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 3.8101 -0.8576 -0.0132 24 1 6.2526 -0.7251 -0.0040 25 1 8.2082 0.6813 -0.0048 26 1 11.3728 1.7337 -0.0047 27 1 6.0285 3.5535 -0.0017 28 1 3.5857 3.4303 -0.0001 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039083597.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:45 Heat of formation + Delta-G solvation = -66.139342 kcal Electronic energy + Delta-G solvation = -14036.131368 eV Core-core repulsion = 11437.795485 eV Total energy + Delta-G solvation = -2598.335883 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.74532 -38.31213 -35.84353 -35.14109 -32.24333 -30.20025 -28.99657 -27.04818 -25.12469 -22.43914 -21.66143 -20.02689 -18.06114 -17.19066 -16.56983 -16.23128 -15.76581 -14.90828 -14.36685 -13.85175 -13.12050 -13.02415 -13.00894 -12.59226 -12.45394 -12.07128 -11.80292 -11.37464 -11.30557 -10.80525 -10.55136 -10.41814 -10.33390 -9.89800 -9.73926 -8.99473 -8.21990 -6.96772 -6.90270 -4.02711 1.76966 2.49865 2.96810 3.02535 3.05898 3.36746 3.42696 3.82212 4.57532 4.96905 5.03975 5.33053 5.39495 5.52130 5.71144 5.82656 5.86522 6.28035 6.47662 6.65431 6.83427 6.95178 7.01983 7.21944 7.35623 7.38127 7.52863 7.90846 8.42342 8.52508 8.99346 9.17589 10.24246 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.070141 B = 0.005594 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.097759 B = 5004.453704 C = 5388.406590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.365 6.365 3 C 0.514 3.486 4 O -0.548 6.548 5 C -0.281 4.281 6 C 0.000 4.000 7 C -0.251 4.251 8 C 0.218 3.782 9 N -0.522 5.522 10 C -0.307 4.307 11 H 0.111 0.889 12 C 0.026 3.974 13 N -0.875 5.875 14 Si 0.938 3.062 15 H -0.272 1.272 16 H -0.279 1.279 17 H -0.264 1.264 18 C -0.234 4.234 19 C 0.007 3.993 20 H 0.092 0.908 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.114 0.886 24 H 0.109 0.891 25 H 0.403 0.597 26 H 0.282 0.718 27 H 0.121 0.879 28 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.636 -2.321 -0.008 7.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.283 6.283 3 C 0.366 3.634 4 O -0.441 6.441 5 C -0.287 4.287 6 C -0.021 4.021 7 C -0.275 4.275 8 C 0.090 3.910 9 N -0.118 5.118 10 C -0.437 4.437 11 H 0.129 0.871 12 C -0.180 4.180 13 N -0.510 5.510 14 Si 0.763 3.237 15 H -0.198 1.198 16 H -0.204 1.204 17 H -0.189 1.189 18 C -0.257 4.257 19 C -0.013 4.013 20 H 0.111 0.889 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.132 0.868 24 H 0.127 0.873 25 H 0.238 0.762 26 H 0.092 0.908 27 H 0.139 0.861 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.290 -1.905 -0.016 7.535 hybrid contribution 0.561 0.374 0.006 0.675 sum -6.729 -1.531 -0.010 6.901 Atomic orbital electron populations 1.23068 0.77923 1.02615 1.01931 1.86573 1.22033 1.34209 1.85456 1.21394 0.89562 0.80387 0.72076 1.90723 1.67252 1.36092 1.50082 1.18121 0.87001 0.94831 1.28705 1.20474 0.92930 0.96555 0.92096 1.19947 0.94472 0.95275 1.17816 1.18050 0.83788 0.93915 0.95275 1.41222 1.02183 1.09326 1.59047 1.19979 0.90181 0.85994 1.47556 0.87138 1.25490 0.96494 0.99892 0.96139 1.69648 1.07884 1.27925 1.45500 0.85712 0.78710 0.80304 0.78926 1.19787 1.20369 1.18864 1.20085 0.92738 0.97183 1.15739 1.20388 0.93638 0.95540 0.91745 0.88924 0.92558 0.92551 0.86776 0.87299 0.76186 0.90830 0.86117 0.86811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.57 101.05 1.07 1.56 15 2 O -0.37 -6.15 9.80 -40.69 -0.40 -6.55 15 3 C 0.51 10.09 7.89 34.45 0.27 10.36 15 4 O -0.55 -11.73 16.13 -19.28 -0.31 -12.04 15 5 C -0.28 -5.64 5.88 -104.93 -0.62 -6.26 15 6 C 0.00 0.00 9.56 -39.55 -0.38 -0.38 15 7 C -0.25 -4.94 9.83 -39.75 -0.39 -5.34 15 8 C 0.22 4.74 6.62 -83.89 -0.56 4.18 15 9 N -0.52 -12.07 5.41 -9.59 -0.05 -12.12 15 10 C -0.31 -7.37 9.55 -15.11 -0.14 -7.51 15 11 H 0.11 2.55 5.65 -52.49 -0.30 2.25 15 12 C 0.03 0.62 5.50 -17.44 -0.10 0.52 15 13 N -0.88 -21.71 13.05 55.49 0.72 -20.98 15 14 Si 0.94 18.50 29.55 -169.99 -5.02 13.47 15 15 H -0.27 -5.35 7.11 56.52 0.40 -4.95 15 16 H -0.28 -5.47 7.11 56.52 0.40 -5.07 15 17 H -0.26 -5.12 7.11 56.52 0.40 -4.72 15 18 C -0.23 -4.95 9.24 -39.75 -0.37 -5.32 15 19 C 0.01 0.15 9.54 -39.55 -0.38 -0.23 15 20 H 0.09 0.84 8.14 -51.94 -0.42 0.41 15 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 23 H 0.11 1.88 7.60 -52.49 -0.40 1.49 15 24 H 0.11 1.94 8.06 -52.49 -0.42 1.52 15 25 H 0.40 9.31 7.89 -40.82 -0.32 8.98 15 26 H 0.28 6.56 8.31 -40.82 -0.34 6.22 15 27 H 0.12 2.50 5.93 -52.49 -0.31 2.19 15 28 H 0.11 2.20 7.64 -52.49 -0.40 1.80 15 LS Contribution 254.93 15.07 3.84 3.84 Total: -1.00 -26.77 254.93 -5.36 -32.13 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -2.55 Total: 10.66 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -1.59 Total: -8.41 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.67 Total: -33.10 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.71 Total: -18.59 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.02 Total: 13.47 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -26.77 -5.36 -32.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039083597.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.008 kcal (2) G-P(sol) polarization free energy of solvation -26.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds