Wall clock time and date at job start Mon Mar 30 2020 03:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38387 * 120.00165 * 2 1 4 4 N 1.32118 * 120.00091 * 179.97438 * 3 2 1 5 5 C 1.32154 * 119.99692 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99920 * 179.72668 * 5 4 3 7 7 N 1.46501 * 109.47318 * 275.00357 * 6 5 4 8 8 C 1.34777 * 120.00154 * 179.97438 * 7 6 5 9 9 O 1.21686 * 120.00122 * 0.02562 * 8 7 6 10 10 C 1.46371 * 119.99975 * 179.97438 * 8 7 6 11 11 H 1.08002 * 120.00120 * 0.02562 * 10 8 7 12 12 C 1.40054 * 120.00131 * 180.02562 * 10 8 7 13 13 N 1.30672 * 119.99666 * 0.02562 * 12 10 8 14 14 Si 1.86801 * 119.99967 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.46998 * 90.00263 * 14 12 10 16 16 H 1.48500 * 109.46830 * 209.99685 * 14 12 10 17 17 H 1.48500 * 109.47078 * 329.99611 * 14 12 10 18 18 C 1.38342 * 120.00353 * 0.02562 * 5 4 3 19 19 N 1.32124 * 120.00069 * 179.97438 * 2 1 3 20 20 H 1.09003 * 109.46587 * 90.00880 * 1 2 3 21 21 H 1.08998 * 109.47245 * 210.00431 * 1 2 3 22 22 H 1.08997 * 109.47657 * 330.01020 * 1 2 3 23 23 H 1.08001 * 119.99856 * 359.97438 * 3 2 1 24 24 H 1.08999 * 109.47209 * 35.00003 * 6 5 4 25 25 H 1.08994 * 109.47427 * 155.00146 * 6 5 4 26 26 H 0.97003 * 119.99780 * 359.97438 * 7 6 5 27 27 H 0.97003 * 119.99490 * 180.02562 * 13 12 10 28 28 H 1.08001 * 119.99992 * 179.97438 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1984 0.0000 4 7 3.5202 1.1984 0.0005 5 6 4.1809 0.0539 0.0015 6 6 5.6879 0.0538 -0.0041 7 7 6.1711 0.1700 -1.3822 8 6 7.4953 0.1912 -1.6325 9 8 8.2895 0.1133 -0.7139 10 6 7.9780 0.3068 -3.0095 11 1 7.2732 0.3755 -3.8249 12 6 9.3540 0.3282 -3.2697 13 7 10.2068 0.2446 -2.2832 14 14 9.9701 0.4764 -5.0270 15 1 10.1339 1.9108 -5.3747 16 1 11.2778 -0.2159 -5.1530 17 1 8.9884 -0.1478 -5.9499 18 6 3.4891 -1.1442 0.0015 19 7 2.1677 -1.1442 0.0005 20 1 -0.3632 -0.0002 -1.0277 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3634 0.8900 0.5136 23 1 1.6590 2.1338 -0.0004 24 1 6.0535 0.8974 0.5814 25 1 6.0528 -0.8762 0.4316 26 1 5.5380 0.2318 -2.1146 27 1 11.1598 0.2598 -2.4634 28 1 4.0291 -2.0795 0.0020 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039115392.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:02 Heat of formation + Delta-G solvation = 1.153146 kcal Electronic energy + Delta-G solvation = -14003.878262 eV Core-core repulsion = 11440.753152 eV Total energy + Delta-G solvation = -2563.125110 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.10108 -37.32874 -34.90299 -33.53857 -32.59998 -31.99844 -28.96092 -26.49379 -24.69159 -24.53346 -21.87705 -19.73249 -17.71251 -17.52374 -16.08497 -15.63864 -15.38258 -15.04958 -14.27449 -13.99328 -13.42796 -13.06761 -12.87982 -12.68136 -12.38664 -11.92216 -11.55483 -11.40420 -11.19129 -11.03299 -10.92278 -10.48179 -10.23988 -9.12780 -8.98910 -8.86044 -7.64471 -7.57918 -6.20179 -4.65695 0.75957 1.17377 3.14366 3.20989 3.24484 3.64453 4.00207 4.11527 4.22390 4.47294 4.57311 4.72869 5.02508 5.09570 5.22647 5.33743 5.41652 5.54163 5.75020 5.78175 6.19418 6.33920 6.45166 7.33439 7.42471 7.84907 7.85976 8.01235 8.29925 9.00985 9.47195 10.57264 10.75205 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.056743 B = 0.005482 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.336493 B = 5106.632913 C = 5315.421041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.066 3.934 3 C 0.050 3.950 4 N -0.422 5.422 5 C 0.073 3.927 6 C 0.185 3.815 7 N -0.760 5.760 8 C 0.557 3.443 9 O -0.579 6.579 10 C -0.543 4.543 11 H 0.068 0.932 12 C 0.087 3.913 13 N -0.767 5.767 14 Si 0.909 3.091 15 H -0.272 1.272 16 H -0.279 1.279 17 H -0.265 1.265 18 C 0.068 3.932 19 N -0.442 5.442 20 H 0.080 0.920 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.166 0.834 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.380 0.620 27 H 0.269 0.731 28 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.980 -0.289 2.138 16.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.075 4.075 3 C -0.111 4.111 4 N -0.137 5.137 5 C -0.067 4.067 6 C 0.059 3.941 7 N -0.416 5.416 8 C 0.361 3.639 9 O -0.461 6.461 10 C -0.580 4.580 11 H 0.086 0.914 12 C -0.133 4.133 13 N -0.396 5.396 14 Si 0.734 3.266 15 H -0.197 1.197 16 H -0.204 1.204 17 H -0.189 1.189 18 C -0.092 4.092 19 N -0.157 5.157 20 H 0.099 0.901 21 H 0.096 0.904 22 H 0.096 0.904 23 H 0.184 0.816 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.211 0.789 27 H 0.080 0.920 28 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -15.160 -0.358 2.908 15.440 hybrid contribution -0.044 0.151 -1.208 1.218 sum -15.204 -0.207 1.700 15.300 Atomic orbital electron populations 1.20645 0.87931 1.03665 1.03320 1.22318 0.98375 0.89954 0.96852 1.23634 0.90797 0.99051 0.97581 1.68363 1.08332 1.29679 1.07324 1.22629 0.98810 0.89391 0.95899 1.19691 0.83481 1.02395 0.88567 1.46156 1.08578 1.82525 1.04388 1.18240 0.78700 0.76432 0.90541 1.90606 1.53827 1.54913 1.46773 1.20852 0.91990 1.53925 0.91233 0.91420 1.25711 0.96692 0.92636 0.98219 1.70020 1.02451 1.35151 1.31972 0.86348 0.78508 0.78876 0.82881 1.19716 1.20415 1.18928 1.23689 0.90208 0.99656 0.95640 1.68304 1.08809 1.29285 1.09313 0.90146 0.90358 0.90374 0.81642 0.91149 0.91123 0.78865 0.92041 0.81090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 10.19 36.01 0.37 -0.39 15 2 C 0.07 0.79 6.79 -82.41 -0.56 0.23 15 3 C 0.05 0.63 10.88 -17.37 -0.19 0.44 15 4 N -0.42 -6.81 10.42 -9.29 -0.10 -6.91 15 5 C 0.07 1.20 6.15 -82.41 -0.51 0.69 15 6 C 0.18 3.61 6.00 -5.19 -0.03 3.58 15 7 N -0.76 -17.34 5.54 -62.91 -0.35 -17.69 15 8 C 0.56 15.93 7.75 -12.99 -0.10 15.83 15 9 O -0.58 -18.73 15.02 5.20 0.08 -18.65 15 10 C -0.54 -15.45 9.54 -35.63 -0.34 -15.79 15 11 H 0.07 1.77 7.85 -52.49 -0.41 1.36 15 12 C 0.09 2.45 5.50 -17.36 -0.10 2.35 15 13 N -0.77 -23.06 11.83 55.55 0.66 -22.40 15 14 Si 0.91 20.22 29.56 -169.99 -5.02 15.20 15 15 H -0.27 -5.92 7.11 56.52 0.40 -5.52 15 16 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 17 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 18 C 0.07 1.00 10.86 -17.38 -0.19 0.81 15 19 N -0.44 -6.20 10.42 -9.29 -0.10 -6.30 15 20 H 0.08 0.55 8.14 -51.93 -0.42 0.12 15 21 H 0.08 0.60 8.14 -51.93 -0.42 0.18 15 22 H 0.08 0.43 8.09 -51.93 -0.42 0.01 15 23 H 0.17 1.49 8.06 -52.49 -0.42 1.06 15 24 H 0.07 1.49 8.14 -51.93 -0.42 1.07 15 25 H 0.07 1.35 8.05 -51.93 -0.42 0.93 15 26 H 0.38 7.94 8.44 -40.82 -0.34 7.60 15 27 H 0.27 7.31 8.29 -40.82 -0.34 6.97 15 28 H 0.17 2.17 8.06 -52.49 -0.42 1.74 15 LS Contribution 259.05 15.07 3.90 3.90 Total: -1.00 -35.12 259.05 -5.41 -40.53 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -2.84 Total: 4.56 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -1.64 Total: 7.75 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.11 Total: -53.30 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.08 Total: -18.65 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -35.12 -5.41 -40.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039115392.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.687 kcal (2) G-P(sol) polarization free energy of solvation -35.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds