Wall clock time and date at job start Mon Mar 30 2020 03:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38387 * 120.00165 * 2 1 4 4 N 1.32118 * 120.00091 * 179.97438 * 3 2 1 5 5 C 1.32154 * 119.99692 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99920 * 179.72668 * 5 4 3 7 7 N 1.46501 * 109.47318 * 275.00357 * 6 5 4 8 8 C 1.34777 * 120.00154 * 179.97438 * 7 6 5 9 9 O 1.21686 * 120.00122 * 0.02562 * 8 7 6 10 10 C 1.46371 * 119.99975 * 179.97438 * 8 7 6 11 11 H 1.08002 * 120.00120 * 0.02562 * 10 8 7 12 12 C 1.40054 * 120.00131 * 180.02562 * 10 8 7 13 13 N 1.30672 * 119.99666 * 0.02562 * 12 10 8 14 14 Si 1.86801 * 119.99967 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.46998 * 90.00263 * 14 12 10 16 16 H 1.48500 * 109.46830 * 209.99685 * 14 12 10 17 17 H 1.48500 * 109.47078 * 329.99611 * 14 12 10 18 18 C 1.38342 * 120.00353 * 0.02562 * 5 4 3 19 19 N 1.32124 * 120.00069 * 179.97438 * 2 1 3 20 20 H 1.09003 * 109.46587 * 90.00880 * 1 2 3 21 21 H 1.08998 * 109.47245 * 210.00431 * 1 2 3 22 22 H 1.08997 * 109.47657 * 330.01020 * 1 2 3 23 23 H 1.08001 * 119.99856 * 359.97438 * 3 2 1 24 24 H 1.08999 * 109.47209 * 35.00003 * 6 5 4 25 25 H 1.08994 * 109.47427 * 155.00146 * 6 5 4 26 26 H 0.97003 * 119.99780 * 359.97438 * 7 6 5 27 27 H 0.97003 * 119.99490 * 180.02562 * 13 12 10 28 28 H 1.08001 * 119.99992 * 179.97438 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1984 0.0000 4 7 3.5202 1.1984 0.0005 5 6 4.1809 0.0539 0.0015 6 6 5.6879 0.0538 -0.0041 7 7 6.1711 0.1700 -1.3822 8 6 7.4953 0.1912 -1.6325 9 8 8.2895 0.1133 -0.7139 10 6 7.9780 0.3068 -3.0095 11 1 7.2732 0.3755 -3.8249 12 6 9.3540 0.3282 -3.2697 13 7 10.2068 0.2446 -2.2832 14 14 9.9701 0.4764 -5.0270 15 1 10.1339 1.9108 -5.3747 16 1 11.2778 -0.2159 -5.1530 17 1 8.9884 -0.1478 -5.9499 18 6 3.4891 -1.1442 0.0015 19 7 2.1677 -1.1442 0.0005 20 1 -0.3632 -0.0002 -1.0277 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3634 0.8900 0.5136 23 1 1.6590 2.1338 -0.0004 24 1 6.0535 0.8974 0.5814 25 1 6.0528 -0.8762 0.4316 26 1 5.5380 0.2318 -2.1146 27 1 11.1598 0.2598 -2.4634 28 1 4.0291 -2.0795 0.0020 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039115392.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:02 Heat of formation + Delta-G solvation = -26.903199 kcal Electronic energy + Delta-G solvation = -14005.094877 eV Core-core repulsion = 11440.753152 eV Total energy + Delta-G solvation = -2564.341725 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.20598 -39.39721 -36.28664 -35.00850 -34.50808 -33.49786 -30.33648 -28.33645 -26.04389 -25.69159 -23.09269 -21.78096 -19.48163 -18.82620 -17.60224 -17.19714 -16.74084 -16.37910 -15.78812 -15.70644 -15.27605 -14.44542 -14.03565 -13.68635 -13.51376 -13.31174 -13.14866 -13.05439 -12.73471 -12.64864 -12.58248 -12.15255 -12.01985 -10.94590 -10.28986 -10.08891 -9.81908 -9.57997 -8.31170 -6.88396 -0.32482 0.07800 1.40278 1.41795 1.57311 2.23580 2.44544 2.53274 2.93102 3.16438 3.26822 3.44097 3.59354 3.73473 4.06200 4.15401 4.48122 4.63207 4.71656 4.80281 4.88104 5.11110 5.30184 5.43247 5.82084 6.08336 6.19958 6.27313 6.76114 6.84353 7.44428 8.43716 8.64179 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.056743 B = 0.005482 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.336493 B = 5106.632913 C = 5315.421041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.078 3.922 3 C 0.052 3.948 4 N -0.451 5.451 5 C 0.052 3.948 6 C 0.192 3.808 7 N -0.747 5.747 8 C 0.541 3.459 9 O -0.628 6.628 10 C -0.572 4.572 11 H 0.086 0.914 12 C 0.029 3.971 13 N -0.820 5.820 14 Si 1.000 3.000 15 H -0.262 1.262 16 H -0.271 1.271 17 H -0.250 1.250 18 C 0.070 3.930 19 N -0.456 5.456 20 H 0.096 0.904 21 H 0.080 0.920 22 H 0.108 0.892 23 H 0.205 0.795 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.391 0.609 27 H 0.276 0.724 28 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.283 0.038 0.582 18.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.064 4.064 3 C -0.110 4.110 4 N -0.166 5.166 5 C -0.087 4.087 6 C 0.066 3.934 7 N -0.402 5.402 8 C 0.345 3.655 9 O -0.515 6.515 10 C -0.608 4.608 11 H 0.104 0.896 12 C -0.187 4.187 13 N -0.449 5.449 14 Si 0.819 3.181 15 H -0.186 1.186 16 H -0.195 1.195 17 H -0.173 1.173 18 C -0.089 4.089 19 N -0.172 5.172 20 H 0.115 0.885 21 H 0.099 0.901 22 H 0.127 0.873 23 H 0.222 0.778 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.224 0.776 27 H 0.086 0.914 28 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -17.506 -0.050 1.354 17.558 hybrid contribution 0.463 0.089 -0.648 0.801 sum -17.043 0.039 0.706 17.057 Atomic orbital electron populations 1.20833 0.84414 1.05339 1.04758 1.23111 1.00501 0.89106 0.93647 1.24291 0.89494 1.01016 0.96224 1.68247 1.10410 1.29856 1.08089 1.22004 0.96736 0.90559 0.99380 1.19567 0.86329 1.01275 0.86222 1.45785 1.07173 1.80967 1.06306 1.18600 0.80111 0.76178 0.90585 1.90558 1.55708 1.57199 1.48061 1.21389 0.93307 1.54390 0.91749 0.89628 1.26990 0.96534 0.91245 1.03908 1.70180 1.03222 1.36127 1.35395 0.84986 0.78106 0.79365 0.75622 1.18648 1.19549 1.17291 1.23746 0.90726 0.99310 0.95107 1.68434 1.08215 1.30395 1.10151 0.88530 0.90099 0.87349 0.77836 0.93518 0.91190 0.77647 0.91404 0.80071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 10.19 71.24 0.73 -0.35 15 2 C 0.08 1.64 6.79 42.55 0.29 1.93 15 3 C 0.05 1.16 10.88 84.69 0.92 2.08 15 4 N -0.45 -14.22 10.42 -183.30 -1.91 -16.13 15 5 C 0.05 1.71 6.15 42.54 0.26 1.97 15 6 C 0.19 7.84 6.00 85.63 0.51 8.36 15 7 N -0.75 -35.14 5.54 -471.15 -2.61 -37.75 15 8 C 0.54 32.03 7.75 86.36 0.67 32.70 15 9 O -0.63 -42.62 15.02 -4.30 -0.06 -42.69 15 10 C -0.57 -32.96 9.54 24.83 0.24 -32.72 15 11 H 0.09 4.45 7.85 -2.91 -0.02 4.43 15 12 C 0.03 1.61 5.50 85.31 0.47 2.08 15 13 N -0.82 -50.55 11.83 21.84 0.26 -50.29 15 14 Si 1.00 41.23 29.56 68.60 2.03 43.26 15 15 H -0.26 -10.31 7.11 99.48 0.71 -9.60 15 16 H -0.27 -10.70 7.11 99.48 0.71 -10.00 15 17 H -0.25 -9.57 7.11 99.48 0.71 -8.87 15 18 C 0.07 2.00 10.86 84.67 0.92 2.92 15 19 N -0.46 -11.99 10.42 -183.30 -1.91 -13.90 15 20 H 0.10 0.88 8.14 -2.39 -0.02 0.86 15 21 H 0.08 0.93 8.14 -2.39 -0.02 0.91 15 22 H 0.11 0.62 8.09 -2.39 -0.02 0.60 15 23 H 0.21 2.82 8.06 -2.91 -0.02 2.80 15 24 H 0.05 2.11 8.14 -2.39 -0.02 2.09 15 25 H 0.07 2.82 8.05 -2.39 -0.02 2.81 15 26 H 0.39 16.55 8.44 -92.71 -0.78 15.76 15 27 H 0.28 15.34 8.29 -92.71 -0.77 14.57 15 28 H 0.18 4.59 8.06 -2.91 -0.02 4.56 15 Total: -1.00 -78.82 259.05 1.20 -77.62 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.40 Total: 20.92 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: 5.01 Total: 18.97 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -6.17 Total: -118.08 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -0.06 Total: -42.69 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -78.82 1.20 -77.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039115392.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.716 kcal (2) G-P(sol) polarization free energy of solvation -78.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds