Wall clock time and date at job start Mon Mar 30 2020 02:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21275 * 119.99689 * 2 1 4 4 N 1.34771 * 119.99961 * 179.97438 * 2 1 3 5 5 C 1.46506 * 120.00088 * 180.02562 * 4 2 1 6 6 C 1.50694 * 108.74324 * 181.67998 * 5 4 2 7 7 H 1.07993 * 120.00492 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99700 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99928 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 119.99996 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46980 * 90.00240 * 10 8 6 12 12 H 1.48500 * 109.47418 * 210.00105 * 10 8 6 13 13 H 1.48496 * 109.47603 * 330.00702 * 10 8 6 14 14 C 1.49605 * 108.77639 * 63.46271 * 5 4 2 15 15 C 1.32657 * 123.02846 * 222.41771 * 14 5 4 16 16 C 1.47484 * 119.40593 * 0.62105 * 15 14 5 17 17 O 1.21684 * 121.12684 * 196.58151 * 16 15 14 18 18 C 1.47489 * 117.74777 * 16.58972 * 16 15 14 19 19 C 1.32638 * 119.40871 * 343.42903 * 18 16 15 20 20 H 1.09001 * 109.46953 * 90.00217 * 1 2 3 21 21 H 1.09000 * 109.47318 * 209.99815 * 1 2 3 22 22 H 1.09000 * 109.47161 * 330.00445 * 1 2 3 23 23 H 0.96995 * 120.00304 * 0.02562 * 4 2 1 24 24 H 0.97004 * 120.00101 * 179.97438 * 9 8 6 25 25 H 1.08000 * 118.48445 * 42.42599 * 14 5 4 26 26 H 1.08007 * 120.29689 * 180.65366 * 15 14 5 27 27 H 1.08002 * 120.29862 * 163.40139 * 18 16 15 28 28 H 1.08005 * 118.48705 * 179.36850 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6460 -1.1672 0.0011 6 6 4.1302 -2.5936 -0.0402 7 1 3.4181 -3.4052 -0.0637 8 6 5.4825 -2.8626 -0.0481 9 7 6.3496 -1.8743 -0.0190 10 14 6.0828 -4.6307 -0.0986 11 1 6.2417 -5.0593 -1.5115 12 1 7.3901 -4.7298 0.5988 13 1 5.0938 -5.5089 0.5766 14 6 4.1270 -0.5341 1.2683 15 6 5.1372 0.3249 1.3094 16 6 5.8229 0.6966 0.0577 17 8 6.9165 1.2299 0.0740 18 6 5.1382 0.4002 -1.2146 19 6 4.1279 -0.4592 -1.2257 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6960 -2.0072 0.0005 24 1 7.3010 -2.0636 -0.0241 25 1 3.6291 -0.7882 2.1924 26 1 5.4549 0.7477 2.2510 27 1 5.4562 0.8790 -2.1289 28 1 3.6305 -0.6574 -2.1637 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039126050.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:07 Heat of formation + Delta-G solvation = -33.826659 kcal Electronic energy + Delta-G solvation = -15290.980544 eV Core-core repulsion = 12694.045845 eV Total energy + Delta-G solvation = -2596.934700 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -39.39929 -37.73054 -35.84291 -32.80788 -32.14730 -30.15588 -29.62689 -27.05328 -23.90811 -21.32889 -20.77112 -19.74024 -17.32534 -16.26299 -15.64359 -15.28600 -14.90502 -14.76754 -14.02671 -13.74025 -13.10579 -12.61903 -12.51162 -12.27760 -12.06566 -11.84404 -11.35177 -11.22834 -11.11483 -10.79274 -10.47356 -9.91359 -9.24933 -9.13080 -8.46202 -8.05642 -7.99838 -7.94828 -6.28094 -4.56128 2.31036 3.12932 3.20324 3.23579 3.28009 3.47108 4.01023 4.20685 4.93010 4.96273 5.34722 5.53636 5.64266 5.66013 5.94834 5.98906 6.12036 6.42655 6.69693 7.10499 7.30613 7.35768 7.44004 7.48020 7.71867 7.74110 7.81384 8.40955 8.47108 8.95805 9.12828 9.20147 10.65539 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.025468 B = 0.014100 C = 0.010164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.147727 B = 1985.360012 C = 2754.205705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.495 3.505 3 O -0.542 6.542 4 N -0.710 5.710 5 C 0.334 3.666 6 C -0.537 4.537 7 H 0.077 0.923 8 C 0.073 3.927 9 N -0.856 5.856 10 Si 0.910 3.090 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.271 1.271 14 C -0.036 4.036 15 C -0.216 4.216 16 C 0.476 3.524 17 O -0.519 6.519 18 C -0.216 4.216 19 C -0.033 4.033 20 H 0.085 0.915 21 H 0.074 0.926 22 H 0.085 0.915 23 H 0.396 0.604 24 H 0.274 0.726 25 H 0.091 0.909 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.702 -1.782 -0.009 9.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.281 3.719 3 O -0.420 6.420 4 N -0.361 5.361 5 C 0.249 3.751 6 C -0.574 4.574 7 H 0.095 0.905 8 C -0.135 4.135 9 N -0.489 5.489 10 Si 0.736 3.264 11 H -0.203 1.203 12 H -0.208 1.208 13 H -0.196 1.196 14 C -0.056 4.056 15 C -0.236 4.236 16 C 0.361 3.639 17 O -0.401 6.401 18 C -0.236 4.236 19 C -0.053 4.053 20 H 0.104 0.896 21 H 0.093 0.907 22 H 0.103 0.897 23 H 0.230 0.770 24 H 0.085 0.915 25 H 0.109 0.891 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.507 -0.734 0.006 8.539 hybrid contribution 0.212 -1.627 -0.052 1.642 sum -8.296 -2.361 -0.047 8.625 Atomic orbital electron populations 1.21881 0.93275 1.04030 1.03964 1.20751 0.90026 0.84457 0.76706 1.90731 1.70461 1.31268 1.49539 1.46514 1.07936 1.07661 1.73949 1.15746 0.75525 0.95363 0.88438 1.20804 0.92573 0.88308 1.55709 0.90534 1.24969 0.96428 0.98287 0.93861 1.69719 1.02948 1.31080 1.45119 0.86305 0.78448 0.83222 0.78395 1.20310 1.20842 1.19611 1.23121 0.94164 0.90047 0.98250 1.22586 1.00331 1.02890 0.97763 1.20232 0.83917 0.70579 0.89152 1.90430 1.20926 1.38348 1.90433 1.22559 1.00381 1.02873 0.97779 1.23078 0.94067 0.89903 0.98266 0.89619 0.90730 0.89653 0.77041 0.91503 0.89100 0.87702 0.87720 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 10.30 36.01 0.37 -1.61 15 2 C 0.49 8.67 7.33 -10.98 -0.08 8.59 15 3 O -0.54 -11.97 15.43 5.56 0.09 -11.88 15 4 N -0.71 -12.80 5.00 -51.86 -0.26 -13.06 15 5 C 0.33 7.52 0.62 -136.32 -0.08 7.44 15 6 C -0.54 -12.65 8.02 -34.44 -0.28 -12.92 15 7 H 0.08 1.68 7.55 -52.49 -0.40 1.28 15 8 C 0.07 1.80 5.13 -17.82 -0.09 1.71 15 9 N -0.86 -22.92 8.32 55.43 0.46 -22.46 15 10 Si 0.91 19.46 29.54 -169.99 -5.02 14.44 15 11 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 13 H -0.27 -5.62 7.11 56.52 0.40 -5.22 15 14 C -0.04 -0.84 6.92 -36.73 -0.25 -1.09 15 15 C -0.22 -5.38 9.42 -37.71 -0.36 -5.73 15 16 C 0.48 12.73 5.07 -32.05 -0.16 12.56 15 17 O -0.52 -14.88 17.94 5.20 0.09 -14.78 15 18 C -0.22 -5.40 9.42 -37.71 -0.36 -5.75 15 19 C -0.03 -0.78 6.69 -36.73 -0.25 -1.02 15 20 H 0.09 0.86 8.14 -51.93 -0.42 0.43 15 21 H 0.07 0.68 8.14 -51.93 -0.42 0.25 15 22 H 0.08 0.95 8.14 -51.93 -0.42 0.53 15 23 H 0.40 5.91 8.26 -40.82 -0.34 5.57 15 24 H 0.27 7.33 8.31 -40.82 -0.34 6.99 15 25 H 0.09 1.96 8.06 -52.49 -0.42 1.54 15 26 H 0.11 2.43 8.06 -52.48 -0.42 2.00 15 27 H 0.10 2.43 8.06 -52.49 -0.42 2.01 15 28 H 0.09 1.97 8.06 -52.48 -0.42 1.54 15 LS Contribution 247.25 15.07 3.73 3.73 Total: -1.00 -31.01 247.25 -5.28 -36.29 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -2.83 Total: 5.57 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -1.53 Total: 2.17 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.20 Total: -35.52 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: 0.18 Total: -26.66 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.01 -5.28 -36.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039126050.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.462 kcal (2) G-P(sol) polarization free energy of solvation -31.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds