Wall clock time and date at job start Mon Mar 30 2020 02:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21275 * 119.99689 * 2 1 4 4 N 1.34771 * 119.99961 * 179.97438 * 2 1 3 5 5 C 1.46506 * 120.00088 * 180.02562 * 4 2 1 6 6 C 1.50694 * 108.74324 * 181.67998 * 5 4 2 7 7 H 1.07993 * 120.00492 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99700 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99928 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 119.99996 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46980 * 90.00240 * 10 8 6 12 12 H 1.48500 * 109.47418 * 210.00105 * 10 8 6 13 13 H 1.48496 * 109.47603 * 330.00702 * 10 8 6 14 14 C 1.49605 * 108.77639 * 63.46271 * 5 4 2 15 15 C 1.32657 * 123.02846 * 222.41771 * 14 5 4 16 16 C 1.47484 * 119.40593 * 0.62105 * 15 14 5 17 17 O 1.21684 * 121.12684 * 196.58151 * 16 15 14 18 18 C 1.47489 * 117.74777 * 16.58972 * 16 15 14 19 19 C 1.32638 * 119.40871 * 343.42903 * 18 16 15 20 20 H 1.09001 * 109.46953 * 90.00217 * 1 2 3 21 21 H 1.09000 * 109.47318 * 209.99815 * 1 2 3 22 22 H 1.09000 * 109.47161 * 330.00445 * 1 2 3 23 23 H 0.96995 * 120.00304 * 0.02562 * 4 2 1 24 24 H 0.97004 * 120.00101 * 179.97438 * 9 8 6 25 25 H 1.08000 * 118.48445 * 42.42599 * 14 5 4 26 26 H 1.08007 * 120.29689 * 180.65366 * 15 14 5 27 27 H 1.08002 * 120.29862 * 163.40139 * 18 16 15 28 28 H 1.08005 * 118.48705 * 179.36850 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6460 -1.1672 0.0011 6 6 4.1302 -2.5936 -0.0402 7 1 3.4181 -3.4052 -0.0637 8 6 5.4825 -2.8626 -0.0481 9 7 6.3496 -1.8743 -0.0190 10 14 6.0828 -4.6307 -0.0986 11 1 6.2417 -5.0593 -1.5115 12 1 7.3901 -4.7298 0.5988 13 1 5.0938 -5.5089 0.5766 14 6 4.1270 -0.5341 1.2683 15 6 5.1372 0.3249 1.3094 16 6 5.8229 0.6966 0.0577 17 8 6.9165 1.2299 0.0740 18 6 5.1382 0.4002 -1.2146 19 6 4.1279 -0.4592 -1.2257 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6960 -2.0072 0.0005 24 1 7.3010 -2.0636 -0.0241 25 1 3.6291 -0.7882 2.1924 26 1 5.4549 0.7477 2.2510 27 1 5.4562 0.8790 -2.1289 28 1 3.6305 -0.6574 -2.1637 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039126050.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:07 Heat of formation + Delta-G solvation = -55.516582 kcal Electronic energy + Delta-G solvation = -15291.921090 eV Core-core repulsion = 12694.045845 eV Total energy + Delta-G solvation = -2597.875245 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.02984 -39.58832 -37.67963 -34.44091 -34.04169 -32.04960 -30.92322 -28.66119 -25.78979 -23.12507 -22.67497 -21.30598 -19.00491 -17.92979 -17.29658 -17.11125 -16.65025 -16.59774 -15.53378 -15.36428 -14.94847 -14.39304 -14.37200 -13.92412 -13.35987 -13.15747 -13.06679 -12.89376 -12.79480 -12.56127 -12.20005 -11.72017 -10.98848 -10.76552 -10.27599 -9.92072 -9.89304 -9.77041 -8.15950 -6.48743 0.37557 1.43669 1.48207 1.57264 1.58176 1.93561 2.32873 2.61348 3.06846 3.08991 3.75807 4.06921 4.10659 4.28609 4.55811 4.70634 4.78766 4.84973 5.20073 5.42729 5.43015 5.51394 5.56184 5.65910 5.83179 5.90929 5.96335 6.59721 7.00408 7.14849 7.24752 7.63541 8.74237 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.025468 B = 0.014100 C = 0.010164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.147727 B = 1985.360012 C = 2754.205705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.489 3.511 3 O -0.593 6.593 4 N -0.701 5.701 5 C 0.323 3.677 6 C -0.531 4.531 7 H 0.098 0.902 8 C 0.024 3.976 9 N -0.888 5.888 10 Si 0.971 3.029 11 H -0.278 1.278 12 H -0.298 1.298 13 H -0.253 1.253 14 C -0.025 4.025 15 C -0.244 4.244 16 C 0.468 3.532 17 O -0.557 6.557 18 C -0.245 4.245 19 C -0.022 4.022 20 H 0.107 0.893 21 H 0.107 0.893 22 H 0.090 0.910 23 H 0.414 0.586 24 H 0.263 0.737 25 H 0.110 0.890 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.350 -3.656 -0.026 12.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.277 3.723 3 O -0.474 6.474 4 N -0.353 5.353 5 C 0.237 3.763 6 C -0.568 4.568 7 H 0.116 0.884 8 C -0.179 4.179 9 N -0.523 5.523 10 Si 0.796 3.204 11 H -0.204 1.204 12 H -0.225 1.225 13 H -0.177 1.177 14 C -0.045 4.045 15 C -0.264 4.264 16 C 0.356 3.644 17 O -0.443 6.443 18 C -0.265 4.265 19 C -0.042 4.042 20 H 0.126 0.874 21 H 0.125 0.875 22 H 0.109 0.891 23 H 0.251 0.749 24 H 0.072 0.928 25 H 0.128 0.872 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.232 -2.652 -0.011 11.541 hybrid contribution 0.934 -1.066 -0.053 1.418 sum -10.299 -3.718 -0.064 10.950 Atomic orbital electron populations 1.21857 0.87907 1.05957 1.05958 1.21834 0.92437 0.83163 0.74824 1.90727 1.72037 1.32999 1.51639 1.46323 1.05926 1.09125 1.73933 1.15689 0.78375 0.94755 0.87477 1.21174 0.92671 0.89068 1.53908 0.88368 1.25767 0.96955 1.01425 0.93802 1.69899 1.02438 1.32838 1.47104 0.85342 0.77494 0.79445 0.78083 1.20354 1.22461 1.17666 1.23459 0.92971 0.88466 0.99618 1.22671 1.01557 1.04678 0.97514 1.20663 0.83548 0.69626 0.90554 1.90389 1.22383 1.40523 1.90985 1.22643 1.01619 1.04671 0.97531 1.23409 0.92870 0.88390 0.99570 0.87411 0.87469 0.89096 0.74890 0.92772 0.87208 0.87040 0.87154 0.87450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 10.30 71.24 0.73 -2.20 15 2 C 0.49 15.72 7.33 87.66 0.64 16.36 15 3 O -0.59 -25.47 15.43 -3.01 -0.05 -25.52 15 4 N -0.70 -23.00 5.00 -436.39 -2.18 -25.18 15 5 C 0.32 13.97 0.62 0.68 0.00 13.97 15 6 C -0.53 -23.67 8.02 25.60 0.21 -23.46 15 7 H 0.10 3.89 7.55 -2.91 -0.02 3.87 15 8 C 0.02 1.18 5.13 84.66 0.43 1.61 15 9 N -0.89 -47.95 8.32 21.45 0.18 -47.78 15 10 Si 0.97 38.93 29.54 68.60 2.03 40.96 15 11 H -0.28 -11.08 7.11 99.48 0.71 -10.37 15 12 H -0.30 -12.61 7.11 99.48 0.71 -11.90 15 13 H -0.25 -9.31 7.11 99.48 0.71 -8.60 15 14 C -0.02 -1.15 6.92 24.18 0.17 -0.98 15 15 C -0.24 -12.36 9.42 23.54 0.22 -12.14 15 16 C 0.47 25.77 5.07 27.15 0.14 25.91 15 17 O -0.56 -33.34 17.94 -4.30 -0.08 -33.41 15 18 C -0.24 -12.44 9.42 23.55 0.22 -12.22 15 19 C -0.02 -1.03 6.69 24.18 0.16 -0.87 15 20 H 0.11 1.62 8.14 -2.39 -0.02 1.60 15 21 H 0.11 1.33 8.14 -2.39 -0.02 1.31 15 22 H 0.09 1.66 8.14 -2.39 -0.02 1.64 15 23 H 0.41 10.51 8.26 -92.71 -0.77 9.75 15 24 H 0.26 14.39 8.31 -92.70 -0.77 13.62 15 25 H 0.11 4.55 8.06 -2.91 -0.02 4.52 15 26 H 0.11 5.29 8.06 -2.91 -0.02 5.27 15 27 H 0.11 5.28 8.06 -2.91 -0.02 5.26 15 28 H 0.11 4.51 8.06 -2.91 -0.02 4.49 15 Total: -1.00 -67.73 247.25 3.24 -64.49 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.41 Total: 20.46 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 2.93 Total: 5.99 kcal Atomic # 7 Polarization: -70.96 SS G_CDS: -2.00 Total: -72.96 kcal Atomic # 8 Polarization: -58.81 SS G_CDS: -0.12 Total: -58.93 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Total: -67.73 3.24 -64.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039126050.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.972 kcal (2) G-P(sol) polarization free energy of solvation -67.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds