Wall clock time and date at job start Mon Mar 30 2020 02:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35925 * 117.00129 * 2 1 4 4 C 1.38785 * 119.98151 * 179.97438 * 3 2 1 5 5 C 1.38018 * 120.02494 * 180.26776 * 4 3 2 6 6 C 1.38976 * 119.97548 * 359.45812 * 5 4 3 7 7 N 1.39860 * 120.02073 * 180.27213 * 6 5 4 8 8 C 1.37106 * 119.99744 * 276.92555 * 7 6 5 9 9 H 1.07995 * 120.00378 * 31.17740 * 8 7 6 10 10 C 1.38871 * 119.99649 * 211.17612 * 8 7 6 11 11 N 1.31435 * 120.00346 * 336.06525 * 10 8 7 12 12 Si 1.86800 * 119.99917 * 156.06941 * 10 8 7 13 13 H 1.48505 * 109.47094 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47516 * 119.99619 * 12 10 8 15 15 H 1.48497 * 109.47319 * 239.99790 * 12 10 8 16 16 C 1.34777 * 120.00029 * 96.92935 * 7 6 5 17 17 O 1.21291 * 119.99876 * 4.90573 * 16 7 6 18 18 C 1.38980 * 119.95327 * 0.56297 * 6 5 4 19 19 C 1.38009 * 119.97779 * 359.70854 * 18 6 5 20 20 H 1.09000 * 109.46938 * 180.02562 * 1 2 3 21 21 H 1.08992 * 109.47399 * 300.00897 * 1 2 3 22 22 H 1.09008 * 109.46565 * 60.00881 * 1 2 3 23 23 H 1.08001 * 119.98649 * 359.97438 * 4 3 2 24 24 H 1.07996 * 120.01215 * 179.69818 * 5 4 3 25 25 H 0.97000 * 120.00127 * 180.02562 * 11 10 8 26 26 H 1.07997 * 120.00278 * 184.90666 * 16 7 6 27 27 H 1.08000 * 120.00412 * 179.68479 * 18 6 5 28 28 H 1.08006 * 119.99067 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 3.4321 1.2832 0.0005 5 6 4.0597 2.5125 0.0061 6 6 3.3032 3.6783 -0.0002 7 7 3.9382 4.9245 -0.0003 8 6 4.3715 5.4731 1.1791 9 1 4.6973 4.8325 1.9852 10 6 4.3916 6.8526 1.3372 11 7 4.4615 7.6340 0.2826 12 14 4.3195 7.5978 3.0485 13 1 4.2451 6.5118 4.0586 14 1 5.5383 8.4123 3.2857 15 1 3.1171 8.4618 3.1620 16 6 4.1240 5.5860 -1.1597 17 8 3.6627 5.1441 -2.1908 18 6 1.9153 3.6050 -0.0003 19 6 1.2898 2.3748 -0.0002 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8898 22 1 -0.3633 0.5138 -0.8902 23 1 4.0198 0.3771 0.0014 24 1 5.1382 2.5684 0.0115 25 1 4.4759 8.5976 0.3930 26 1 4.6836 6.5097 -1.1708 27 1 1.3267 4.5105 0.0000 28 1 0.2112 2.3176 0.0002 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039168814.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:41 Heat of formation + Delta-G solvation = -31.634290 kcal Electronic energy + Delta-G solvation = -14579.414625 eV Core-core repulsion = 11982.574993 eV Total energy + Delta-G solvation = -2596.839631 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.77372 -38.38499 -36.29863 -34.34928 -31.87058 -30.58681 -28.58485 -26.85989 -24.92156 -22.43501 -21.94435 -19.92172 -18.02276 -17.73190 -15.94280 -15.82687 -15.48042 -14.94997 -14.19615 -14.00742 -13.69129 -13.07509 -12.84253 -12.43663 -12.19800 -12.02503 -11.77665 -11.51168 -11.23073 -10.79394 -10.66177 -10.44797 -10.36052 -9.20330 -8.47303 -8.33395 -7.90235 -7.42561 -6.42665 -4.13422 1.89470 1.99934 3.09772 3.19385 3.24554 3.55400 4.00465 4.29029 4.39730 4.84714 5.10643 5.13362 5.25076 5.30694 5.44430 5.53004 5.91629 5.94997 6.16414 6.54856 6.57471 6.81261 7.10046 7.27728 7.31862 7.42723 7.67960 7.89729 8.72295 8.89559 9.54683 10.08592 10.51510 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.037434 B = 0.008074 C = 0.007373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.796683 B = 3466.877959 C = 3796.598473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.323 6.323 3 C 0.101 3.899 4 C -0.146 4.146 5 C -0.086 4.086 6 C 0.143 3.857 7 N -0.449 5.449 8 C -0.322 4.322 9 H 0.094 0.906 10 C 0.035 3.965 11 N -0.871 5.871 12 Si 0.927 3.073 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.279 1.279 16 C 0.459 3.541 17 O -0.632 6.632 18 C -0.075 4.075 19 C -0.201 4.201 20 H 0.093 0.907 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.125 0.875 24 H 0.127 0.873 25 H 0.274 0.726 26 H 0.179 0.821 27 H 0.121 0.879 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.654 -8.309 3.193 10.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.238 6.238 3 C 0.057 3.943 4 C -0.165 4.165 5 C -0.106 4.106 6 C 0.052 3.948 7 N -0.170 5.170 8 C -0.448 4.448 9 H 0.112 0.888 10 C -0.169 4.169 11 N -0.510 5.510 12 Si 0.753 3.247 13 H -0.192 1.192 14 H -0.207 1.207 15 H -0.204 1.204 16 C 0.234 3.766 17 O -0.516 6.516 18 C -0.094 4.094 19 C -0.220 4.220 20 H 0.112 0.888 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.143 0.857 24 H 0.145 0.855 25 H 0.086 0.914 26 H 0.194 0.806 27 H 0.139 0.861 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.774 -8.490 2.644 10.093 hybrid contribution -0.412 0.687 0.906 1.209 sum -5.186 -7.804 3.549 10.019 Atomic orbital electron populations 1.22952 0.79209 1.03145 1.01245 1.86006 1.20751 1.27450 1.89561 1.18911 0.92257 0.83667 0.99434 1.20166 0.91092 0.97946 1.07299 1.21192 1.00041 0.90949 0.98413 1.18007 0.90784 0.87819 0.98215 1.42212 1.51769 1.14878 1.08173 1.19509 1.43096 0.90483 0.91758 0.88819 1.25345 0.96256 0.96017 0.99270 1.69576 1.46832 1.05493 1.29139 0.85870 0.78032 0.78950 0.81856 1.19242 1.20693 1.20444 1.24789 0.82160 0.89593 0.80061 1.90459 1.55499 1.71911 1.33740 1.21203 0.94499 0.96794 0.96953 1.21012 0.99315 0.92131 1.09558 0.88832 0.92944 0.92917 0.85688 0.85498 0.91436 0.80598 0.86138 0.86048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 15 2 O -0.32 -5.04 10.50 -19.50 -0.20 -5.25 15 3 C 0.10 1.81 6.69 -39.17 -0.26 1.55 15 4 C -0.15 -2.66 9.98 -39.46 -0.39 -3.05 15 5 C -0.09 -1.79 9.97 -39.39 -0.39 -2.18 15 6 C 0.14 3.36 4.42 -83.65 -0.37 2.99 15 7 N -0.45 -11.69 2.65 -63.33 -0.17 -11.86 15 8 C -0.32 -8.26 9.51 -14.96 -0.14 -8.40 15 9 H 0.09 2.31 7.94 -52.49 -0.42 1.89 15 10 C 0.03 0.86 5.43 -17.49 -0.09 0.77 15 11 N -0.87 -22.55 10.17 55.49 0.56 -21.98 15 12 Si 0.93 19.32 29.61 -169.99 -5.03 14.28 15 13 H -0.27 -5.50 7.11 56.52 0.40 -5.10 15 14 H -0.28 -5.78 7.11 56.52 0.40 -5.38 15 15 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 16 C 0.46 12.74 10.76 54.06 0.58 13.32 15 17 O -0.63 -18.88 17.15 5.55 0.10 -18.78 15 18 C -0.07 -1.62 9.97 -39.39 -0.39 -2.01 15 19 C -0.20 -3.65 9.03 -39.46 -0.36 -4.00 15 20 H 0.09 0.77 8.14 -51.93 -0.42 0.35 15 21 H 0.05 0.54 7.66 -51.93 -0.40 0.14 15 22 H 0.05 0.56 7.66 -51.92 -0.40 0.16 15 23 H 0.13 1.94 8.06 -52.49 -0.42 1.52 15 24 H 0.13 2.48 8.06 -52.49 -0.42 2.06 15 25 H 0.27 6.61 8.31 -40.82 -0.34 6.28 15 26 H 0.18 4.95 5.24 -52.49 -0.28 4.67 15 27 H 0.12 2.62 8.06 -52.49 -0.42 2.19 15 28 H 0.12 1.81 6.29 -52.48 -0.33 1.48 15 LS Contribution 252.37 15.07 3.80 3.80 Total: -1.00 -30.23 252.37 -4.42 -34.65 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -2.64 Total: 4.82 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -0.83 Total: 0.31 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: 0.40 Total: -33.84 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.11 Total: -24.03 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.23 -4.42 -34.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039168814.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.011 kcal (2) G-P(sol) polarization free energy of solvation -30.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds