Wall clock time and date at job start Mon Mar 30 2020 02:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35925 * 117.00129 * 2 1 4 4 C 1.38785 * 119.98151 * 179.97438 * 3 2 1 5 5 C 1.38018 * 120.02494 * 180.26776 * 4 3 2 6 6 C 1.38976 * 119.97548 * 359.45812 * 5 4 3 7 7 N 1.39860 * 120.02073 * 180.27213 * 6 5 4 8 8 C 1.37106 * 119.99744 * 276.92555 * 7 6 5 9 9 H 1.07995 * 120.00378 * 31.17740 * 8 7 6 10 10 C 1.38871 * 119.99649 * 211.17612 * 8 7 6 11 11 N 1.31435 * 120.00346 * 336.06525 * 10 8 7 12 12 Si 1.86800 * 119.99917 * 156.06941 * 10 8 7 13 13 H 1.48505 * 109.47094 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47516 * 119.99619 * 12 10 8 15 15 H 1.48497 * 109.47319 * 239.99790 * 12 10 8 16 16 C 1.34777 * 120.00029 * 96.92935 * 7 6 5 17 17 O 1.21291 * 119.99876 * 4.90573 * 16 7 6 18 18 C 1.38980 * 119.95327 * 0.56297 * 6 5 4 19 19 C 1.38009 * 119.97779 * 359.70854 * 18 6 5 20 20 H 1.09000 * 109.46938 * 180.02562 * 1 2 3 21 21 H 1.08992 * 109.47399 * 300.00897 * 1 2 3 22 22 H 1.09008 * 109.46565 * 60.00881 * 1 2 3 23 23 H 1.08001 * 119.98649 * 359.97438 * 4 3 2 24 24 H 1.07996 * 120.01215 * 179.69818 * 5 4 3 25 25 H 0.97000 * 120.00127 * 180.02562 * 11 10 8 26 26 H 1.07997 * 120.00278 * 184.90666 * 16 7 6 27 27 H 1.08000 * 120.00412 * 179.68479 * 18 6 5 28 28 H 1.08006 * 119.99067 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 3.4321 1.2832 0.0005 5 6 4.0597 2.5125 0.0061 6 6 3.3032 3.6783 -0.0002 7 7 3.9382 4.9245 -0.0003 8 6 4.3715 5.4731 1.1791 9 1 4.6973 4.8325 1.9852 10 6 4.3916 6.8526 1.3372 11 7 4.4615 7.6340 0.2826 12 14 4.3195 7.5978 3.0485 13 1 4.2451 6.5118 4.0586 14 1 5.5383 8.4123 3.2857 15 1 3.1171 8.4618 3.1620 16 6 4.1240 5.5860 -1.1597 17 8 3.6627 5.1441 -2.1908 18 6 1.9153 3.6050 -0.0003 19 6 1.2898 2.3748 -0.0002 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8898 22 1 -0.3633 0.5138 -0.8902 23 1 4.0198 0.3771 0.0014 24 1 5.1382 2.5684 0.0115 25 1 4.4759 8.5976 0.3930 26 1 4.6836 6.5097 -1.1708 27 1 1.3267 4.5105 0.0000 28 1 0.2112 2.3176 0.0002 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039168814.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:40 Heat of formation + Delta-G solvation = -50.579048 kcal Electronic energy + Delta-G solvation = -14580.236131 eV Core-core repulsion = 11982.574993 eV Total energy + Delta-G solvation = -2597.661138 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.29521 -40.09635 -37.95992 -36.32554 -33.76136 -32.09439 -30.09028 -28.03537 -26.88880 -24.15772 -23.46910 -21.73590 -19.92327 -19.08727 -17.86631 -17.23120 -16.91040 -16.58043 -15.93832 -15.54077 -15.28615 -14.76720 -14.51986 -14.21254 -13.82599 -13.52648 -13.38000 -13.08415 -12.76785 -12.59253 -12.06251 -11.91206 -11.84705 -11.14049 -10.44725 -9.99121 -9.86278 -8.98445 -8.37676 -6.14898 0.36469 0.43126 1.44011 1.48452 1.63245 2.19655 2.28579 2.38728 2.77490 2.91785 3.24537 3.84862 3.93066 4.32790 4.40672 4.43438 4.51770 4.65244 4.75588 4.95147 5.05669 5.18013 5.29343 5.39570 5.61818 5.71506 5.93333 6.44651 6.71661 6.90643 7.51530 8.04208 8.59454 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.037434 B = 0.008074 C = 0.007373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.796683 B = 3466.877959 C = 3796.598473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.327 6.327 3 C 0.113 3.887 4 C -0.142 4.142 5 C -0.095 4.095 6 C 0.092 3.908 7 N -0.441 5.441 8 C -0.347 4.347 9 H 0.100 0.900 10 C -0.006 4.006 11 N -0.896 5.896 12 Si 1.003 2.997 13 H -0.260 1.260 14 H -0.272 1.272 15 H -0.278 1.278 16 C 0.444 3.556 17 O -0.666 6.666 18 C -0.093 4.093 19 C -0.192 4.192 20 H 0.126 0.874 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.155 0.845 24 H 0.129 0.871 25 H 0.281 0.719 26 H 0.172 0.828 27 H 0.107 0.893 28 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.676 -9.778 4.750 12.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.241 6.241 3 C 0.068 3.932 4 C -0.161 4.161 5 C -0.114 4.114 6 C 0.002 3.998 7 N -0.160 5.160 8 C -0.473 4.473 9 H 0.118 0.882 10 C -0.207 4.207 11 N -0.536 5.536 12 Si 0.826 3.174 13 H -0.184 1.184 14 H -0.197 1.197 15 H -0.204 1.204 16 C 0.219 3.781 17 O -0.554 6.554 18 C -0.113 4.113 19 C -0.211 4.211 20 H 0.144 0.856 21 H 0.082 0.918 22 H 0.078 0.922 23 H 0.173 0.827 24 H 0.147 0.853 25 H 0.092 0.908 26 H 0.186 0.814 27 H 0.125 0.875 28 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.800 -9.987 4.226 12.298 hybrid contribution -0.171 1.021 0.442 1.125 sum -5.971 -8.966 4.669 11.740 Atomic orbital electron populations 1.23367 0.76568 1.05740 1.02116 1.86026 1.23386 1.25790 1.88868 1.19007 0.92332 0.84500 0.97397 1.20442 0.91900 0.97897 1.05833 1.21231 1.00185 0.91129 0.98878 1.18361 0.92025 0.87424 1.01978 1.42192 1.50612 1.15622 1.07615 1.19871 1.44414 0.91274 0.91733 0.88246 1.26309 0.95070 0.96067 1.03232 1.69634 1.46650 1.06077 1.31219 0.84734 0.78032 0.78010 0.76666 1.18380 1.19749 1.20386 1.24679 0.82915 0.90077 0.80405 1.90404 1.57339 1.72918 1.34720 1.21179 0.93764 0.97914 0.98423 1.21255 1.01066 0.90820 1.07981 0.85578 0.91791 0.92242 0.82709 0.85335 0.90821 0.81365 0.87462 0.82664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.41 15 2 O -0.33 -8.97 10.50 -92.70 -0.97 -9.94 15 3 C 0.11 3.74 6.69 22.53 0.15 3.89 15 4 C -0.14 -4.90 9.98 22.35 0.22 -4.68 15 5 C -0.09 -3.93 9.97 22.39 0.22 -3.71 15 6 C 0.09 4.44 4.42 38.22 0.17 4.61 15 7 N -0.44 -23.75 2.65 -472.67 -1.25 -25.00 15 8 C -0.35 -18.08 9.51 84.02 0.80 -17.28 15 9 H 0.10 4.95 7.94 -2.91 -0.02 4.92 15 10 C -0.01 -0.28 5.43 84.90 0.46 0.18 15 11 N -0.90 -47.15 10.17 21.65 0.22 -46.93 15 12 Si 1.00 39.18 29.61 68.60 2.03 41.21 15 13 H -0.26 -9.76 7.11 99.48 0.71 -9.05 15 14 H -0.27 -10.22 7.11 99.48 0.71 -9.52 15 15 H -0.28 -10.82 7.11 99.48 0.71 -10.11 15 16 C 0.44 25.77 10.76 129.79 1.40 27.17 15 17 O -0.67 -41.50 17.15 -3.06 -0.05 -41.55 15 18 C -0.09 -4.06 9.97 22.39 0.22 -3.84 15 19 C -0.19 -6.62 9.03 22.35 0.20 -6.42 15 20 H 0.13 1.49 8.14 -2.39 -0.02 1.47 15 21 H 0.06 1.04 7.66 -2.39 -0.02 1.02 15 22 H 0.06 1.03 7.66 -2.38 -0.02 1.01 15 23 H 0.16 4.35 8.06 -2.91 -0.02 4.33 15 24 H 0.13 5.11 8.06 -2.91 -0.02 5.08 15 25 H 0.28 13.62 8.31 -92.71 -0.77 12.85 15 26 H 0.17 9.93 5.24 -2.91 -0.02 9.92 15 27 H 0.11 4.81 8.06 -2.91 -0.02 4.79 15 28 H 0.16 4.16 6.29 -2.91 -0.02 4.14 15 Total: -1.00 -66.13 252.37 6.10 -60.03 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 1.17 Total: 20.86 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 4.96 Total: 1.32 kcal Atomic # 7 Polarization: -70.90 SS G_CDS: -1.03 Total: -71.93 kcal Atomic # 8 Polarization: -50.47 SS G_CDS: -1.03 Total: -51.49 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.21 kcal Total: -66.13 6.10 -60.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039168814.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.455 kcal (2) G-P(sol) polarization free energy of solvation -66.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds