Wall clock time and date at job start Mon Mar 30 2020 02:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45204 * 109.46867 * 2 1 4 4 C 1.34782 * 116.99779 * 179.97438 * 3 2 1 5 5 O 1.21503 * 120.00023 * 359.97438 * 4 3 2 6 6 C 1.47528 * 119.99821 * 180.02562 * 4 3 2 7 7 C 1.39583 * 121.05535 * 354.32248 * 6 4 3 8 8 C 1.38339 * 119.24499 * 180.02562 * 7 6 4 9 9 N 1.32135 * 121.49510 * 359.97438 * 8 7 6 10 10 C 1.31302 * 122.36608 * 0.02562 * 9 8 7 11 11 C 1.40917 * 120.52036 * 0.25550 * 10 9 8 12 12 C 1.40803 * 120.75634 * 179.72156 * 11 10 9 13 13 H 1.08005 * 119.99979 * 147.41165 * 12 11 10 14 14 C 1.40346 * 120.00342 * 327.40836 * 12 11 10 15 15 N 1.30591 * 119.99416 * 350.46480 * 14 12 11 16 16 Si 1.86796 * 120.00341 * 170.46905 * 14 12 11 17 17 H 1.48504 * 109.47066 * 89.99861 * 16 14 12 18 18 H 1.48496 * 109.47260 * 209.99859 * 16 14 12 19 19 H 1.48499 * 109.46903 * 330.00188 * 16 14 12 20 20 H 1.09003 * 109.47310 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47281 * 299.99858 * 1 2 3 22 22 H 1.09002 * 109.47551 * 59.99664 * 1 2 3 23 23 H 1.09000 * 109.47087 * 240.00635 * 2 1 3 24 24 H 1.08994 * 109.47452 * 120.00018 * 2 1 3 25 25 H 1.08000 * 120.37440 * 0.04515 * 7 6 4 26 26 H 1.07999 * 119.24855 * 180.02562 * 8 7 6 27 27 H 1.07990 * 119.73955 * 179.97438 * 10 9 8 28 28 H 0.97003 * 119.99678 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3501 1.5456 0.0005 5 8 4.0903 0.5821 0.0015 6 6 3.9139 2.9089 0.0011 7 6 3.0896 4.0291 -0.1171 8 6 3.6583 5.2902 -0.1128 9 7 4.9639 5.4583 0.0013 10 6 5.7953 4.4485 0.1161 11 6 5.3159 3.1233 0.1164 12 6 6.2034 2.0365 0.2333 13 1 5.8906 1.1360 0.7408 14 6 7.4947 2.1234 -0.3097 15 7 7.8125 3.1285 -1.0805 16 14 8.7586 0.8014 0.0699 17 1 8.6711 -0.2745 -0.9499 18 1 10.1191 1.3960 0.0467 19 1 8.4901 0.2317 1.4148 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 1.8933 -0.5137 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 2.0200 3.9126 -0.2106 26 1 3.0205 6.1570 -0.2038 27 1 6.8551 4.6347 0.2064 28 1 8.7050 3.1888 -1.4556 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039191190.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:35 Heat of formation + Delta-G solvation = -69.702199 kcal Electronic energy + Delta-G solvation = -14612.922168 eV Core-core repulsion = 12014.431788 eV Total energy + Delta-G solvation = -2598.490380 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -39.49779 -38.03157 -35.62257 -34.11780 -31.70969 -30.88659 -29.84586 -25.99169 -23.92152 -22.35934 -21.57240 -20.03828 -17.69359 -16.92929 -15.95168 -15.81401 -15.37459 -14.35885 -13.94609 -13.72421 -13.55035 -12.79388 -12.67378 -12.34240 -12.21165 -11.62047 -11.46672 -11.32670 -11.21047 -10.98007 -10.70950 -10.17620 -9.92553 -9.57425 -9.32061 -8.46882 -8.08584 -7.61306 -7.08918 -4.66983 2.05883 2.59234 2.98478 3.04521 3.10416 3.51340 3.79105 3.86401 4.49575 5.18607 5.25943 5.48823 5.50401 5.64469 5.94200 5.99578 6.05554 6.12848 6.27870 6.55791 6.74177 6.90016 7.13539 7.18698 7.33901 7.56734 7.86198 8.32098 8.44818 8.52866 8.94167 9.53926 9.86636 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.024324 B = 0.010878 C = 0.007690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.849703 B = 2573.449355 C = 3640.051182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 O -0.369 6.369 4 C 0.508 3.492 5 O -0.514 6.514 6 C -0.232 4.232 7 C -0.080 4.080 8 C -0.062 4.062 9 N -0.469 5.469 10 C 0.076 3.924 11 C 0.095 3.905 12 C -0.399 4.399 13 H 0.108 0.892 14 C 0.068 3.932 15 N -0.775 5.775 16 Si 0.926 3.074 17 H -0.265 1.265 18 H -0.273 1.273 19 H -0.256 1.256 20 H 0.072 0.928 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.111 0.889 26 H 0.124 0.876 27 H 0.154 0.846 28 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.673 -4.062 1.321 7.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.011 4.011 3 O -0.288 6.288 4 C 0.358 3.642 5 O -0.404 6.404 6 C -0.240 4.240 7 C -0.101 4.101 8 C -0.209 4.209 9 N -0.178 5.178 10 C -0.096 4.096 11 C 0.089 3.911 12 C -0.427 4.427 13 H 0.126 0.874 14 C -0.153 4.153 15 N -0.399 5.399 16 Si 0.749 3.251 17 H -0.190 1.190 18 H -0.198 1.198 19 H -0.180 1.180 20 H 0.091 0.909 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.129 0.871 26 H 0.142 0.858 27 H 0.171 0.829 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.101 -3.399 1.158 6.238 hybrid contribution 0.159 -1.570 -0.088 1.580 sum -4.942 -4.969 1.070 7.089 Atomic orbital electron populations 1.21769 0.93541 1.02176 1.03156 1.22763 0.94495 0.81960 1.01914 1.86575 1.25950 1.30451 1.85856 1.21235 0.79016 0.90541 0.73397 1.90719 1.59385 1.42761 1.47554 1.18963 0.94379 0.88344 1.22328 1.21784 0.98712 0.93353 0.96206 1.21673 0.91316 0.94840 1.13052 1.67011 1.04357 1.36951 1.09462 1.23086 0.98745 0.87103 1.00639 1.18436 0.89936 0.94781 0.87926 1.20220 0.94722 1.01251 1.26550 0.87388 1.26276 0.99280 0.96918 0.92857 1.69648 1.21853 1.27990 1.20455 0.86001 0.78127 0.80315 0.80657 1.19006 1.19803 1.17997 0.90936 0.91785 0.91790 0.91972 0.91978 0.87071 0.85825 0.82921 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.29 37.16 0.38 -1.37 15 2 C 0.06 1.01 6.20 37.16 0.23 1.24 15 3 O -0.37 -7.50 9.59 -40.72 -0.39 -7.89 15 4 C 0.51 12.21 7.87 34.52 0.27 12.48 15 5 O -0.51 -13.23 13.54 -19.27 -0.26 -13.49 15 6 C -0.23 -5.87 5.96 -104.05 -0.62 -6.49 15 7 C -0.08 -1.83 9.69 -39.04 -0.38 -2.21 15 8 C -0.06 -1.43 11.16 -17.38 -0.19 -1.62 15 9 N -0.47 -11.82 10.31 -12.59 -0.13 -11.95 15 10 C 0.08 1.97 9.84 -16.76 -0.16 1.81 15 11 C 0.10 2.55 5.54 -106.36 -0.59 1.96 15 12 C -0.40 -10.53 7.84 -37.82 -0.30 -10.83 15 13 H 0.11 2.92 5.93 -52.48 -0.31 2.61 15 14 C 0.07 1.65 5.27 -17.29 -0.09 1.56 15 15 N -0.78 -19.08 11.07 55.57 0.62 -18.46 15 16 Si 0.93 18.39 29.57 -169.99 -5.03 13.36 15 17 H -0.27 -5.31 7.11 56.52 0.40 -4.91 15 18 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 19 H -0.26 -5.08 7.11 56.52 0.40 -4.68 15 20 H 0.07 0.66 8.14 -51.93 -0.42 0.24 15 21 H 0.06 0.73 8.14 -51.93 -0.42 0.30 15 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 23 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 24 H 0.06 0.98 8.14 -51.93 -0.42 0.55 15 25 H 0.11 2.21 7.71 -52.49 -0.40 1.81 15 26 H 0.12 2.44 8.06 -52.49 -0.42 2.01 15 27 H 0.15 3.96 6.50 -52.49 -0.34 3.62 15 28 H 0.29 6.40 8.29 -40.82 -0.34 6.06 15 LS Contribution 252.23 15.07 3.80 3.80 Total: -1.00 -28.77 252.23 -5.57 -34.34 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -2.73 Total: 3.75 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -1.45 Total: -3.47 kcal Atomic # 7 Polarization: -30.89 SS G_CDS: 0.49 Total: -30.41 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.65 Total: -21.38 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.77 -5.57 -34.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039191190.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.359 kcal (2) G-P(sol) polarization free energy of solvation -28.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds