Wall clock time and date at job start Mon Mar 30 2020 02:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45197 * 109.47409 * 2 1 4 4 C 1.34667 * 117.00219 * 179.97438 * 3 2 1 5 5 O 1.21434 * 119.99932 * 0.02562 * 4 3 2 6 6 C 1.48038 * 120.00088 * 179.97438 * 4 3 2 7 7 C 1.40187 * 120.83943 * 359.97438 * 6 4 3 8 8 C 1.38646 * 119.39252 * 180.02562 * 7 6 4 9 9 N 1.31398 * 121.16077 * 359.97438 * 8 7 6 10 10 C 1.33554 * 121.84470 * 359.73008 * 9 8 7 11 11 C 1.41382 * 119.76614 * 180.29048 * 10 9 8 12 12 H 1.08003 * 120.00098 * 174.01821 * 11 10 9 13 13 C 1.40065 * 120.00149 * 354.01854 * 11 10 9 14 14 N 1.30719 * 119.99824 * 6.34758 * 13 11 10 15 15 Si 1.86800 * 120.00031 * 186.34413 * 13 11 10 16 16 H 1.48506 * 109.46851 * 94.98923 * 15 13 11 17 17 H 1.48501 * 109.46996 * 214.98393 * 15 13 11 18 18 H 1.48491 * 109.47252 * 334.98492 * 15 13 11 19 19 C 1.39382 * 120.84369 * 180.02562 * 6 4 3 20 20 H 1.09003 * 109.46881 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47413 * 300.00035 * 1 2 3 22 22 H 1.08998 * 109.46850 * 60.00490 * 1 2 3 23 23 H 1.09001 * 109.46978 * 239.99654 * 2 1 3 24 24 H 1.09004 * 109.47100 * 119.99884 * 2 1 3 25 25 H 1.07996 * 120.30733 * 359.97438 * 7 6 4 26 26 H 1.07997 * 119.42465 * 179.97438 * 8 7 6 27 27 H 0.97001 * 120.00254 * 180.02562 * 14 13 11 28 28 H 1.08000 * 120.58878 * 359.95763 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3491 1.5453 0.0005 5 8 4.0888 0.5823 0.0005 6 6 3.9150 2.9133 0.0000 7 6 3.0774 4.0375 -0.0016 8 6 3.6396 5.3048 -0.0026 9 7 4.9431 5.4705 -0.0016 10 6 5.7851 4.4338 0.0058 11 6 7.1802 4.6628 0.0128 12 1 7.8632 3.8326 0.1163 13 6 7.6767 5.9664 -0.1144 14 7 6.8537 6.9820 -0.1147 15 14 9.5147 6.2535 -0.2834 16 1 9.8693 6.3573 -1.7217 17 1 9.8847 7.5136 0.4098 18 1 10.2513 5.1180 0.3273 19 6 5.2939 3.1162 0.0000 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.0042 3.9174 -0.0029 26 1 2.9948 6.1712 -0.0043 27 1 7.1974 7.8847 -0.2032 28 1 5.9730 2.2764 0.0011 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044370963.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:47 Heat of formation + Delta-G solvation = -61.493331 kcal Electronic energy + Delta-G solvation = -14185.728259 eV Core-core repulsion = 11587.593842 eV Total energy + Delta-G solvation = -2598.134417 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.92511 -38.05611 -36.09305 -33.74895 -31.80876 -30.79374 -30.10828 -25.81954 -24.43466 -22.45800 -21.46756 -20.42030 -18.00990 -16.89717 -16.18349 -15.97232 -15.13066 -14.32933 -14.14033 -13.88283 -13.75481 -12.92560 -12.63226 -12.51206 -12.29811 -11.75896 -11.52401 -11.28976 -11.25712 -10.88619 -10.57480 -10.29274 -10.07178 -9.99425 -9.48041 -8.50120 -7.80550 -7.74794 -6.54276 -4.64167 1.83182 2.62669 3.04626 3.07595 3.09827 3.11288 3.57110 3.88307 4.64349 4.98726 5.02861 5.23809 5.33324 5.72594 5.75462 5.80253 5.94732 5.98922 6.33495 6.52051 6.63525 6.75738 6.95359 7.10390 7.32255 7.38284 7.74896 8.10160 8.33545 8.48956 8.74937 9.92899 10.18997 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.061953 B = 0.006268 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.844455 B = 4466.015813 C = 4894.253505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.353 6.353 4 C 0.515 3.485 5 O -0.521 6.521 6 C -0.066 4.066 7 C -0.275 4.275 8 C 0.121 3.879 9 N -0.471 5.471 10 C 0.246 3.754 11 C -0.423 4.423 12 H 0.088 0.912 13 C 0.067 3.933 14 N -0.712 5.712 15 Si 0.912 3.088 16 H -0.268 1.268 17 H -0.275 1.275 18 H -0.260 1.260 19 C -0.200 4.200 20 H 0.075 0.925 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.109 0.891 26 H 0.127 0.873 27 H 0.275 0.725 28 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.529 -5.504 -0.111 8.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.270 6.270 4 C 0.361 3.639 5 O -0.410 6.410 6 C -0.073 4.073 7 C -0.298 4.298 8 C -0.044 4.044 9 N -0.184 5.184 10 C 0.122 3.878 11 C -0.455 4.455 12 H 0.106 0.894 13 C -0.159 4.159 14 N -0.333 5.333 15 Si 0.735 3.265 16 H -0.193 1.193 17 H -0.200 1.200 18 H -0.184 1.184 19 C -0.224 4.224 20 H 0.094 0.906 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.128 0.872 26 H 0.145 0.855 27 H 0.087 0.913 28 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.977 -4.757 -0.119 7.640 hybrid contribution 0.331 -0.927 -0.100 0.989 sum -5.646 -5.684 -0.220 8.015 Atomic orbital electron populations 1.21781 0.92948 1.02508 1.03507 1.22932 0.95106 0.81167 1.02247 1.86600 1.24764 1.31154 1.84502 1.21833 0.79753 0.90694 0.71614 1.90737 1.60455 1.42943 1.46874 1.18930 0.94170 0.88252 1.05932 1.21540 0.98545 0.93140 1.16591 1.22565 0.92971 0.94444 0.94430 1.68639 1.01409 1.32891 1.15491 1.18574 0.93943 0.85757 0.89575 1.19683 0.90507 0.93712 1.41548 0.89358 1.26095 1.00257 0.95881 0.93665 1.70110 1.35966 0.99488 1.27691 0.86241 0.81962 0.78948 0.79324 1.19339 1.19987 1.18356 1.22032 0.92447 0.98709 1.09170 0.90603 0.91529 0.91525 0.91580 0.91580 0.87240 0.85541 0.91339 0.86678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.29 37.16 0.38 -1.13 15 2 C 0.06 0.83 6.19 37.16 0.23 1.06 15 3 O -0.35 -6.43 9.57 -40.40 -0.39 -6.81 15 4 C 0.51 11.05 7.92 34.75 0.28 11.32 15 5 O -0.52 -11.89 16.22 -19.22 -0.31 -12.20 15 6 C -0.07 -1.54 5.90 -104.72 -0.62 -2.16 15 7 C -0.28 -6.12 9.72 -38.70 -0.38 -6.50 15 8 C 0.12 2.84 11.17 -17.59 -0.20 2.64 15 9 N -0.47 -12.72 7.86 -11.18 -0.09 -12.80 15 10 C 0.25 6.67 6.55 -85.02 -0.56 6.11 15 11 C -0.42 -11.15 9.13 -37.70 -0.34 -11.50 15 12 H 0.09 2.18 7.86 -52.48 -0.41 1.76 15 13 C 0.07 1.67 5.49 -17.34 -0.10 1.57 15 14 N -0.71 -18.46 11.49 55.55 0.64 -17.82 15 15 Si 0.91 18.19 29.56 -169.99 -5.03 13.17 15 16 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 17 H -0.27 -5.35 7.11 56.52 0.40 -4.95 15 18 H -0.26 -5.10 7.11 56.52 0.40 -4.70 15 19 C -0.20 -5.05 9.40 -38.26 -0.36 -5.41 15 20 H 0.08 0.58 8.14 -51.93 -0.42 0.15 15 21 H 0.07 0.66 8.14 -51.93 -0.42 0.24 15 22 H 0.07 0.66 8.14 -51.93 -0.42 0.24 15 23 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 25 H 0.11 2.15 7.70 -52.49 -0.40 1.75 15 26 H 0.13 2.57 8.06 -52.49 -0.42 2.15 15 27 H 0.28 6.42 8.29 -40.82 -0.34 6.08 15 28 H 0.12 2.83 7.73 -52.49 -0.41 2.42 15 LS Contribution 258.13 15.07 3.89 3.89 Total: -1.00 -29.55 258.13 -5.83 -35.39 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -2.89 Total: 1.19 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -1.66 Total: -3.99 kcal Atomic # 7 Polarization: -31.17 SS G_CDS: 0.55 Total: -30.62 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.70 Total: -19.02 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.17 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.55 -5.83 -35.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044370963.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.107 kcal (2) G-P(sol) polarization free energy of solvation -29.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds