Wall clock time and date at job start Mon Mar 30 2020 02:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45197 * 109.47409 * 2 1 4 4 C 1.34667 * 117.00219 * 179.97438 * 3 2 1 5 5 O 1.21434 * 119.99932 * 0.02562 * 4 3 2 6 6 C 1.48038 * 120.00088 * 179.97438 * 4 3 2 7 7 C 1.40187 * 120.83943 * 359.97438 * 6 4 3 8 8 C 1.38646 * 119.39252 * 180.02562 * 7 6 4 9 9 N 1.31398 * 121.16077 * 359.97438 * 8 7 6 10 10 C 1.33554 * 121.84470 * 359.73008 * 9 8 7 11 11 C 1.41382 * 119.76614 * 180.29048 * 10 9 8 12 12 H 1.08003 * 120.00098 * 174.01821 * 11 10 9 13 13 C 1.40065 * 120.00149 * 354.01854 * 11 10 9 14 14 N 1.30719 * 119.99824 * 6.34758 * 13 11 10 15 15 Si 1.86800 * 120.00031 * 186.34413 * 13 11 10 16 16 H 1.48506 * 109.46851 * 94.98923 * 15 13 11 17 17 H 1.48501 * 109.46996 * 214.98393 * 15 13 11 18 18 H 1.48491 * 109.47252 * 334.98492 * 15 13 11 19 19 C 1.39382 * 120.84369 * 180.02562 * 6 4 3 20 20 H 1.09003 * 109.46881 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47413 * 300.00035 * 1 2 3 22 22 H 1.08998 * 109.46850 * 60.00490 * 1 2 3 23 23 H 1.09001 * 109.46978 * 239.99654 * 2 1 3 24 24 H 1.09004 * 109.47100 * 119.99884 * 2 1 3 25 25 H 1.07996 * 120.30733 * 359.97438 * 7 6 4 26 26 H 1.07997 * 119.42465 * 179.97438 * 8 7 6 27 27 H 0.97001 * 120.00254 * 180.02562 * 14 13 11 28 28 H 1.08000 * 120.58878 * 359.95763 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3491 1.5453 0.0005 5 8 4.0888 0.5823 0.0005 6 6 3.9150 2.9133 0.0000 7 6 3.0774 4.0375 -0.0016 8 6 3.6396 5.3048 -0.0026 9 7 4.9431 5.4705 -0.0016 10 6 5.7851 4.4338 0.0058 11 6 7.1802 4.6628 0.0128 12 1 7.8632 3.8326 0.1163 13 6 7.6767 5.9664 -0.1144 14 7 6.8537 6.9820 -0.1147 15 14 9.5147 6.2535 -0.2834 16 1 9.8693 6.3573 -1.7217 17 1 9.8847 7.5136 0.4098 18 1 10.2513 5.1180 0.3273 19 6 5.2939 3.1162 0.0000 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.0042 3.9174 -0.0029 26 1 2.9948 6.1712 -0.0043 27 1 7.1974 7.8847 -0.2032 28 1 5.9730 2.2764 0.0011 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044370963.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:44 Heat of formation + Delta-G solvation = -78.717169 kcal Electronic energy + Delta-G solvation = -14186.475141 eV Core-core repulsion = 11587.593842 eV Total energy + Delta-G solvation = -2598.881298 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 5.17 seconds Orbital eigenvalues (eV) -41.55583 -39.90176 -37.65710 -35.61875 -33.26862 -32.30731 -31.95769 -27.73520 -26.02840 -23.72218 -23.33676 -22.10882 -19.76609 -18.60998 -17.70682 -17.58473 -16.84602 -16.15869 -16.03114 -15.33659 -15.19276 -14.44977 -14.22198 -14.15870 -13.60799 -13.08697 -12.97771 -12.88667 -12.77430 -12.53274 -12.25544 -11.82163 -11.71220 -11.55380 -11.28204 -10.41802 -9.71666 -9.67038 -8.39939 -6.60652 0.02011 0.76976 1.41786 1.49831 1.56145 1.62701 1.80101 2.22023 2.78132 3.73948 3.77819 3.99800 4.08439 4.13398 4.32629 4.53313 4.62968 4.75340 4.82879 4.92902 5.07136 5.09933 5.24516 5.32581 5.46336 5.53423 5.90123 6.17311 6.56637 6.69555 6.81815 8.01500 8.37009 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.061953 B = 0.006268 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.844455 B = 4466.015813 C = 4894.253505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 O -0.350 6.350 4 C 0.521 3.479 5 O -0.540 6.540 6 C -0.073 4.073 7 C -0.258 4.258 8 C 0.111 3.889 9 N -0.502 5.502 10 C 0.220 3.780 11 C -0.459 4.459 12 H 0.091 0.909 13 C 0.025 3.975 14 N -0.748 5.748 15 Si 0.991 3.009 16 H -0.263 1.263 17 H -0.264 1.264 18 H -0.256 1.256 19 C -0.226 4.226 20 H 0.106 0.894 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.142 0.858 26 H 0.158 0.842 27 H 0.284 0.716 28 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.478 -5.786 -0.204 9.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 O -0.267 6.267 4 C 0.368 3.632 5 O -0.431 6.431 6 C -0.080 4.080 7 C -0.281 4.281 8 C -0.054 4.054 9 N -0.216 5.216 10 C 0.096 3.904 11 C -0.490 4.490 12 H 0.109 0.891 13 C -0.198 4.198 14 N -0.369 5.369 15 Si 0.810 3.190 16 H -0.188 1.188 17 H -0.188 1.188 18 H -0.180 1.180 19 C -0.250 4.250 20 H 0.125 0.875 21 H 0.088 0.912 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.160 0.840 26 H 0.175 0.825 27 H 0.095 0.905 28 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.969 -5.050 -0.209 8.609 hybrid contribution 0.412 -0.919 -0.064 1.009 sum -6.557 -5.969 -0.274 8.871 Atomic orbital electron populations 1.21823 0.89620 1.04647 1.03821 1.23421 0.97613 0.78885 1.02627 1.86572 1.22394 1.34075 1.83619 1.21443 0.80891 0.89560 0.71356 1.90723 1.61313 1.43272 1.47792 1.19209 0.93840 0.90079 1.04897 1.21859 0.99953 0.92193 1.14053 1.23134 0.92415 0.96223 0.93614 1.68612 1.02907 1.33462 1.16590 1.18917 0.94711 0.86553 0.90238 1.20035 0.90791 0.94952 1.43237 0.89115 1.27006 1.05286 0.94929 0.92595 1.70170 1.38370 1.00172 1.28206 0.85065 0.75364 0.79094 0.79441 1.18754 1.18816 1.17964 1.22002 0.93600 0.98049 1.11328 0.87526 0.91201 0.91201 0.91283 0.91279 0.84028 0.82456 0.90504 0.87252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 10.29 71.98 0.74 -1.65 15 2 C 0.05 1.22 6.19 71.98 0.45 1.66 15 3 O -0.35 -12.05 9.57 -55.76 -0.53 -12.59 15 4 C 0.52 21.97 7.92 70.42 0.56 22.53 15 5 O -0.54 -24.56 16.22 20.05 0.33 -24.24 15 6 C -0.07 -3.41 5.90 -19.93 -0.12 -3.53 15 7 C -0.26 -11.11 9.72 22.84 0.22 -10.89 15 8 C 0.11 5.11 11.17 84.86 0.95 6.06 15 9 N -0.50 -27.48 7.86 -189.29 -1.49 -28.97 15 10 C 0.22 12.29 6.55 40.24 0.26 12.55 15 11 C -0.46 -24.92 9.13 23.49 0.21 -24.71 15 12 H 0.09 4.65 7.86 -2.91 -0.02 4.63 15 13 C 0.02 1.23 5.49 85.30 0.47 1.70 15 14 N -0.75 -39.26 11.49 21.84 0.25 -39.01 15 15 Si 0.99 37.40 29.56 68.60 2.03 39.42 15 16 H -0.26 -9.62 7.11 99.48 0.71 -8.91 15 17 H -0.26 -9.39 7.11 99.48 0.71 -8.69 15 18 H -0.26 -9.39 7.11 99.48 0.71 -8.69 15 19 C -0.23 -11.76 9.40 23.13 0.22 -11.55 15 20 H 0.11 1.19 8.14 -2.39 -0.02 1.17 15 21 H 0.07 1.15 8.14 -2.39 -0.02 1.13 15 22 H 0.07 1.15 8.14 -2.39 -0.02 1.13 15 23 H 0.07 1.73 8.14 -2.39 -0.02 1.71 15 24 H 0.07 1.73 8.14 -2.38 -0.02 1.71 15 25 H 0.14 5.12 7.70 -2.91 -0.02 5.10 15 26 H 0.16 6.11 8.06 -2.91 -0.02 6.09 15 27 H 0.28 13.31 8.29 -92.71 -0.77 12.54 15 28 H 0.11 5.63 7.73 -2.91 -0.02 5.61 15 Total: -1.00 -64.37 258.13 5.71 -58.67 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 1.16 Total: 14.54 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 3.96 Total: -7.82 kcal Atomic # 7 Polarization: -66.74 SS G_CDS: -1.24 Total: -67.98 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -0.21 Total: -36.83 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 2.03 Total: 39.42 kcal Total: -64.37 5.71 -58.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044370963.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.051 kcal (2) G-P(sol) polarization free energy of solvation -64.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.17 seconds