Wall clock time and date at job start Mon Mar 30 2020 02:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36870 * 120.00109 * 2 1 4 4 H 1.08003 * 120.00259 * 155.01583 * 3 2 1 5 5 C 1.39050 * 119.99978 * 335.01744 * 3 2 1 6 6 N 1.31368 * 119.99951 * 349.52408 * 5 3 2 7 7 Si 1.86795 * 120.00127 * 169.52099 * 5 3 2 8 8 H 1.48496 * 109.47281 * 59.99915 * 7 5 3 9 9 H 1.48499 * 109.47350 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47256 * 300.00000 * 7 5 3 11 11 C 1.34779 * 120.00121 * 179.97438 * 2 1 3 12 12 O 1.21586 * 120.00052 * 185.85054 * 11 2 1 13 13 C 1.47741 * 119.99926 * 5.85006 * 11 2 1 14 14 C 1.39674 * 120.12183 * 35.21978 * 13 11 2 15 15 C 1.37939 * 119.95810 * 180.02562 * 14 13 11 16 16 C 1.38306 * 120.21136 * 359.74380 * 15 14 13 17 17 C 1.38831 * 120.25223 * 0.51390 * 16 15 14 18 18 O 1.35911 * 119.98215 * 179.76672 * 17 16 15 19 19 C 1.38469 * 120.03587 * 359.48351 * 17 16 15 20 20 H 1.09000 * 109.46705 * 204.88149 * 1 2 3 21 21 H 1.08997 * 109.47347 * 324.88890 * 1 2 3 22 22 H 1.09002 * 109.46611 * 84.88810 * 1 2 3 23 23 H 0.96995 * 119.99891 * 179.97438 * 6 5 3 24 24 H 1.08004 * 120.02455 * 359.97438 * 14 13 11 25 25 H 1.07998 * 119.89421 * 180.02562 * 15 14 13 26 26 H 1.08004 * 119.87796 * 180.25845 * 16 15 14 27 27 H 0.96700 * 113.99579 * 269.72499 * 18 17 16 28 28 H 1.08001 * 120.10738 * 180.23247 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1853 0.0000 4 1 3.1536 1.2291 0.3950 5 6 1.5517 2.3332 -0.5086 6 7 0.4215 2.2462 -1.1726 7 14 2.3558 3.9989 -0.2476 8 1 3.7084 3.9971 -0.8604 9 1 1.5258 5.0542 -0.8822 10 1 2.4722 4.2698 1.2079 11 6 2.1389 -1.1672 0.0005 12 8 3.3500 -1.1699 0.1079 13 6 1.4060 -2.4434 -0.1293 14 6 0.2673 -2.5190 -0.9346 15 6 -0.4148 -3.7121 -1.0530 16 6 0.0283 -4.8366 -0.3807 17 6 1.1560 -4.7701 0.4263 18 8 1.5838 -5.8774 1.0882 19 6 1.8486 -3.5778 0.5525 20 1 -0.3633 -0.9323 0.4324 21 1 -0.3634 0.8406 0.5911 22 1 -0.3632 0.0916 -1.0236 23 1 0.0045 3.0470 -1.5270 24 1 -0.0796 -1.6435 -1.4636 25 1 -1.2949 -3.7694 -1.6762 26 1 -0.5075 -5.7691 -0.4805 27 1 1.2040 -5.9787 1.9717 28 1 2.7283 -3.5257 1.1770 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049095.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:44 Heat of formation + Delta-G solvation = -37.345470 kcal Electronic energy + Delta-G solvation = -14631.543892 eV Core-core repulsion = 12034.456605 eV Total energy + Delta-G solvation = -2597.087287 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.69761 -38.15390 -36.10819 -34.77166 -31.82846 -30.59480 -29.43394 -26.32478 -25.00518 -22.71805 -22.12396 -19.66502 -17.87542 -16.97223 -16.07916 -15.85134 -15.22834 -15.04292 -14.32337 -14.04315 -13.78980 -13.29991 -12.70046 -12.31241 -11.89579 -11.67893 -11.58396 -11.24253 -11.01105 -10.73723 -10.45244 -10.40444 -10.35998 -9.09411 -8.69725 -8.49371 -8.23842 -7.73612 -6.39897 -3.95739 1.36062 1.59123 3.15901 3.20890 3.24949 3.62421 4.05810 4.17940 4.46974 4.82934 5.06387 5.22431 5.28013 5.57726 5.67576 5.81973 6.07169 6.22635 6.31112 6.64140 6.65907 6.79691 6.84191 7.02275 7.15296 7.48714 7.80649 8.07016 8.41646 9.10263 9.31970 9.90387 10.62894 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.056235 B = 0.007436 C = 0.006748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.788463 B = 3764.379413 C = 4148.674792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.431 5.431 3 C -0.307 4.307 4 H 0.100 0.900 5 C 0.033 3.967 6 N -0.878 5.878 7 Si 0.931 3.069 8 H -0.271 1.271 9 H -0.283 1.283 10 H -0.273 1.273 11 C 0.476 3.524 12 O -0.586 6.586 13 C -0.079 4.079 14 C -0.105 4.105 15 C -0.114 4.114 16 C -0.144 4.144 17 C 0.088 3.912 18 O -0.500 6.500 19 C -0.104 4.104 20 H 0.036 0.964 21 H 0.062 0.938 22 H 0.067 0.933 23 H 0.270 0.730 24 H 0.140 0.860 25 H 0.126 0.874 26 H 0.123 0.877 27 H 0.385 0.615 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.901 -8.473 2.417 10.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.148 5.148 3 C -0.435 4.435 4 H 0.118 0.882 5 C -0.171 4.171 6 N -0.517 5.517 7 Si 0.757 3.243 8 H -0.196 1.196 9 H -0.208 1.208 10 H -0.198 1.198 11 C 0.265 3.735 12 O -0.472 6.472 13 C -0.082 4.082 14 C -0.124 4.124 15 C -0.132 4.132 16 C -0.163 4.163 17 C 0.044 3.956 18 O -0.310 6.310 19 C -0.124 4.124 20 H 0.054 0.946 21 H 0.081 0.919 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.158 0.842 25 H 0.144 0.856 26 H 0.141 0.859 27 H 0.240 0.760 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.132 -8.368 1.862 9.991 hybrid contribution -0.134 0.894 0.426 0.999 sum -5.266 -7.474 2.288 9.425 Atomic orbital electron populations 1.21835 0.81109 0.98758 1.02158 1.43455 1.05638 1.04642 1.61060 1.19653 1.00900 0.84340 1.38573 0.88179 1.25417 0.96454 1.00281 0.94967 1.69934 1.18182 1.30067 1.33497 0.85922 0.79136 0.80453 0.78774 1.19628 1.20839 1.19792 1.17988 0.87154 0.83187 0.85205 1.90611 1.13711 1.86815 1.56034 1.20248 0.95309 0.95134 0.97531 1.21810 0.94138 0.98635 0.97822 1.20941 1.00211 0.92217 0.99880 1.21394 0.96408 0.98947 0.99572 1.18318 0.94289 0.85826 0.97128 1.84838 1.70893 1.42208 1.33019 1.21492 1.00043 0.90840 1.00032 0.94559 0.91912 0.91436 0.91959 0.84220 0.85572 0.85860 0.76022 0.84993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.32 7.09 59.85 0.42 2.75 15 2 N -0.43 -11.21 3.01 -123.31 -0.37 -11.58 15 3 C -0.31 -8.56 9.27 -15.00 -0.14 -8.70 15 4 H 0.10 2.92 7.40 -52.48 -0.39 2.53 15 5 C 0.03 0.86 5.15 -17.45 -0.09 0.77 15 6 N -0.88 -22.88 10.69 55.50 0.59 -22.29 15 7 Si 0.93 20.50 29.57 -169.99 -5.03 15.48 15 8 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 9 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 10 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 11 C 0.48 12.23 7.31 -12.38 -0.09 12.14 15 12 O -0.59 -17.07 16.53 5.29 0.09 -16.98 15 13 C -0.08 -1.63 5.16 -104.99 -0.54 -2.18 15 14 C -0.11 -1.87 7.59 -39.15 -0.30 -2.17 15 15 C -0.11 -1.65 10.03 -39.67 -0.40 -2.05 15 16 C -0.14 -2.03 9.98 -39.34 -0.39 -2.42 15 17 C 0.09 1.39 6.70 -39.28 -0.26 1.13 15 18 O -0.50 -6.75 13.50 -19.46 -0.26 -7.02 15 19 C -0.10 -1.96 9.55 -39.00 -0.37 -2.33 15 20 H 0.04 0.69 5.74 -51.93 -0.30 0.40 15 21 H 0.06 1.44 7.41 -51.93 -0.38 1.06 15 22 H 0.07 1.52 6.23 -51.93 -0.32 1.19 15 23 H 0.27 6.65 8.31 -40.82 -0.34 6.32 15 24 H 0.14 2.53 5.53 -52.48 -0.29 2.24 15 25 H 0.13 1.43 8.06 -52.49 -0.42 1.01 15 26 H 0.12 1.40 8.06 -52.48 -0.42 0.97 15 27 H 0.38 3.16 9.06 45.56 0.41 3.57 15 28 H 0.13 2.52 8.00 -52.49 -0.42 2.10 15 LS Contribution 246.22 15.07 3.71 3.71 Total: -1.00 -32.07 246.22 -5.10 -37.17 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -1.67 Total: 4.58 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -2.16 Total: -3.07 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.22 Total: -33.87 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.18 Total: -24.00 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -32.07 -5.10 -37.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049095.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.178 kcal (2) G-P(sol) polarization free energy of solvation -32.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds