Wall clock time and date at job start Mon Mar 30 2020 02:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36870 * 120.00109 * 2 1 4 4 H 1.08003 * 120.00259 * 155.01583 * 3 2 1 5 5 C 1.39050 * 119.99978 * 335.01744 * 3 2 1 6 6 N 1.31368 * 119.99951 * 349.52408 * 5 3 2 7 7 Si 1.86795 * 120.00127 * 169.52099 * 5 3 2 8 8 H 1.48496 * 109.47281 * 59.99915 * 7 5 3 9 9 H 1.48499 * 109.47350 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47256 * 300.00000 * 7 5 3 11 11 C 1.34779 * 120.00121 * 179.97438 * 2 1 3 12 12 O 1.21586 * 120.00052 * 185.85054 * 11 2 1 13 13 C 1.47741 * 119.99926 * 5.85006 * 11 2 1 14 14 C 1.39674 * 120.12183 * 35.21978 * 13 11 2 15 15 C 1.37939 * 119.95810 * 180.02562 * 14 13 11 16 16 C 1.38306 * 120.21136 * 359.74380 * 15 14 13 17 17 C 1.38831 * 120.25223 * 0.51390 * 16 15 14 18 18 O 1.35911 * 119.98215 * 179.76672 * 17 16 15 19 19 C 1.38469 * 120.03587 * 359.48351 * 17 16 15 20 20 H 1.09000 * 109.46705 * 204.88149 * 1 2 3 21 21 H 1.08997 * 109.47347 * 324.88890 * 1 2 3 22 22 H 1.09002 * 109.46611 * 84.88810 * 1 2 3 23 23 H 0.96995 * 119.99891 * 179.97438 * 6 5 3 24 24 H 1.08004 * 120.02455 * 359.97438 * 14 13 11 25 25 H 1.07998 * 119.89421 * 180.02562 * 15 14 13 26 26 H 1.08004 * 119.87796 * 180.25845 * 16 15 14 27 27 H 0.96700 * 113.99579 * 269.72499 * 18 17 16 28 28 H 1.08001 * 120.10738 * 180.23247 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1853 0.0000 4 1 3.1536 1.2291 0.3950 5 6 1.5517 2.3332 -0.5086 6 7 0.4215 2.2462 -1.1726 7 14 2.3558 3.9989 -0.2476 8 1 3.7084 3.9971 -0.8604 9 1 1.5258 5.0542 -0.8822 10 1 2.4722 4.2698 1.2079 11 6 2.1389 -1.1672 0.0005 12 8 3.3500 -1.1699 0.1079 13 6 1.4060 -2.4434 -0.1293 14 6 0.2673 -2.5190 -0.9346 15 6 -0.4148 -3.7121 -1.0530 16 6 0.0283 -4.8366 -0.3807 17 6 1.1560 -4.7701 0.4263 18 8 1.5838 -5.8774 1.0882 19 6 1.8486 -3.5778 0.5525 20 1 -0.3633 -0.9323 0.4324 21 1 -0.3634 0.8406 0.5911 22 1 -0.3632 0.0916 -1.0236 23 1 0.0045 3.0470 -1.5270 24 1 -0.0796 -1.6435 -1.4636 25 1 -1.2949 -3.7694 -1.6762 26 1 -0.5075 -5.7691 -0.4805 27 1 1.2040 -5.9787 1.9717 28 1 2.7283 -3.5257 1.1770 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049095.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:44 Heat of formation + Delta-G solvation = -61.004717 kcal Electronic energy + Delta-G solvation = -14632.569834 eV Core-core repulsion = 12034.456605 eV Total energy + Delta-G solvation = -2598.113229 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.21610 -39.75004 -37.39201 -36.79773 -33.79596 -32.00514 -30.79929 -28.19280 -26.87624 -24.29455 -23.40195 -21.27293 -19.35398 -18.92378 -17.57458 -17.40051 -16.75319 -16.60654 -16.00999 -15.70603 -15.45884 -14.66173 -14.42431 -14.01557 -13.57946 -13.21013 -13.05836 -12.99269 -12.73729 -12.38548 -12.32676 -12.11737 -11.64945 -11.07332 -10.54742 -9.95241 -9.74226 -9.57535 -8.40071 -6.06935 -0.00282 0.31186 1.39241 1.39680 1.50464 1.99095 2.23867 2.68833 2.94472 3.07967 3.34550 3.88635 3.98359 4.18618 4.29284 4.53769 4.56336 4.83216 4.94671 4.98975 5.28447 5.35124 5.39184 5.41042 5.48774 5.83836 6.03743 6.41638 6.86594 7.06873 7.33352 7.91407 8.61219 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.056235 B = 0.007436 C = 0.006748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.788463 B = 3764.379413 C = 4148.674792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.444 5.444 3 C -0.353 4.353 4 H 0.071 0.929 5 C 0.004 3.996 6 N -0.888 5.888 7 Si 0.994 3.006 8 H -0.277 1.277 9 H -0.264 1.264 10 H -0.267 1.267 11 C 0.463 3.537 12 O -0.639 6.639 13 C -0.108 4.108 14 C -0.112 4.112 15 C -0.096 4.096 16 C -0.123 4.123 17 C 0.101 3.899 18 O -0.504 6.504 19 C -0.124 4.124 20 H 0.066 0.934 21 H 0.048 0.952 22 H 0.064 0.936 23 H 0.278 0.722 24 H 0.132 0.868 25 H 0.170 0.830 26 H 0.166 0.834 27 H 0.411 0.589 28 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.193 -9.915 1.955 13.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.160 5.160 3 C -0.481 4.481 4 H 0.089 0.911 5 C -0.199 4.199 6 N -0.525 5.525 7 Si 0.817 3.183 8 H -0.202 1.202 9 H -0.189 1.189 10 H -0.192 1.192 11 C 0.254 3.746 12 O -0.528 6.528 13 C -0.112 4.112 14 C -0.131 4.131 15 C -0.114 4.114 16 C -0.142 4.142 17 C 0.056 3.944 18 O -0.317 6.317 19 C -0.144 4.144 20 H 0.085 0.915 21 H 0.067 0.933 22 H 0.082 0.918 23 H 0.088 0.912 24 H 0.150 0.850 25 H 0.187 0.813 26 H 0.184 0.816 27 H 0.270 0.730 28 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.480 -9.825 1.416 12.430 hybrid contribution 0.537 1.172 0.576 1.412 sum -6.943 -8.653 1.992 11.272 Atomic orbital electron populations 1.21785 0.79021 0.99704 1.01885 1.43685 1.07020 1.04382 1.60960 1.19613 1.00833 0.86308 1.41359 0.91105 1.26165 0.96913 1.02944 0.93878 1.69985 1.18469 1.31327 1.32760 0.84997 0.78041 0.76337 0.78955 1.20212 1.18854 1.19188 1.18869 0.87013 0.84904 0.83791 1.90540 1.16156 1.87966 1.58172 1.19883 0.97225 0.93141 1.00907 1.21780 0.93543 1.00207 0.97552 1.21353 1.00459 0.90517 0.99057 1.21845 0.94984 1.00343 0.97002 1.18313 0.93993 0.84950 0.97139 1.84777 1.71504 1.40642 1.34786 1.21457 1.00344 0.91964 1.00594 0.91536 0.93291 0.91750 0.91192 0.85003 0.81297 0.81605 0.72993 0.86975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.33 7.09 127.77 0.91 6.24 15 2 N -0.44 -24.16 3.01 -662.31 -1.99 -26.15 15 3 C -0.35 -20.72 9.27 84.10 0.78 -19.94 15 4 H 0.07 4.45 7.40 -2.91 -0.02 4.43 15 5 C 0.00 0.22 5.15 84.96 0.44 0.66 15 6 N -0.89 -46.35 10.69 21.68 0.23 -46.12 15 7 Si 0.99 42.44 29.57 68.60 2.03 44.47 15 8 H -0.28 -12.01 7.11 99.48 0.71 -11.30 15 9 H -0.26 -10.43 7.11 99.48 0.71 -9.72 15 10 H -0.27 -11.11 7.11 99.48 0.71 -10.40 15 11 C 0.46 25.13 7.31 86.76 0.63 25.77 15 12 O -0.64 -39.92 16.53 -3.99 -0.07 -39.99 15 13 C -0.11 -4.57 5.16 -20.10 -0.10 -4.68 15 14 C -0.11 -3.81 7.59 22.55 0.17 -3.64 15 15 C -0.10 -2.34 10.03 22.22 0.22 -2.12 15 16 C -0.12 -2.83 9.98 22.43 0.22 -2.60 15 17 C 0.10 2.87 6.70 22.47 0.15 3.02 15 18 O -0.50 -11.92 13.50 -92.54 -1.25 -13.17 15 19 C -0.12 -4.65 9.55 22.64 0.22 -4.43 15 20 H 0.07 2.53 5.74 -2.39 -0.01 2.52 15 21 H 0.05 2.29 7.41 -2.39 -0.02 2.27 15 22 H 0.06 2.91 6.23 -2.39 -0.01 2.89 15 23 H 0.28 13.47 8.31 -92.71 -0.77 12.70 15 24 H 0.13 4.66 5.53 -2.91 -0.02 4.64 15 25 H 0.17 2.75 8.06 -2.91 -0.02 2.73 15 26 H 0.17 2.53 8.06 -2.91 -0.02 2.51 15 27 H 0.41 5.23 9.06 -74.06 -0.67 4.55 15 28 H 0.11 4.53 8.00 -2.91 -0.02 4.51 15 Total: -1.00 -73.49 246.22 3.12 -70.38 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.53 Total: 12.32 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 3.64 Total: -1.73 kcal Atomic # 7 Polarization: -70.52 SS G_CDS: -1.76 Total: -72.28 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -1.32 Total: -53.16 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -73.49 3.12 -70.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049095.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.373 kcal (2) G-P(sol) polarization free energy of solvation -73.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds