Wall clock time and date at job start Mon Mar 30 2020 02:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36901 * 119.99782 * 2 1 4 4 H 1.08003 * 120.00322 * 130.57301 * 3 2 1 5 5 C 1.39021 * 120.00438 * 310.57551 * 3 2 1 6 6 N 1.31378 * 120.00548 * 170.19150 * 5 3 2 7 7 Si 1.86801 * 119.99887 * 350.18763 * 5 3 2 8 8 H 1.48497 * 109.47180 * 94.74754 * 7 5 3 9 9 H 1.48501 * 109.47551 * 214.74998 * 7 5 3 10 10 H 1.48501 * 109.46970 * 334.74702 * 7 5 3 11 11 C 1.34774 * 120.00205 * 180.02562 * 2 1 3 12 12 O 1.21623 * 119.99937 * 2.02930 * 11 2 1 13 13 C 1.47493 * 120.00074 * 182.03216 * 11 2 1 14 14 C 1.39798 * 120.09615 * 137.65240 * 13 11 2 15 15 C 1.37686 * 119.90646 * 180.02562 * 14 13 11 16 16 C 1.39004 * 120.09253 * 0.02562 * 15 14 13 17 17 O 1.35725 * 119.90617 * 179.97438 * 16 15 14 18 18 C 1.39011 * 120.19141 * 0.24195 * 16 15 14 19 19 C 1.37687 * 120.09100 * 359.47958 * 18 16 15 20 20 H 1.08999 * 109.46863 * 264.70265 * 1 2 3 21 21 H 1.09002 * 109.46820 * 24.69947 * 1 2 3 22 22 H 1.09003 * 109.47057 * 144.70346 * 1 2 3 23 23 H 0.96999 * 120.00614 * 180.02562 * 6 5 3 24 24 H 1.08000 * 120.04352 * 359.97438 * 14 13 11 25 25 H 1.07996 * 119.95273 * 179.97438 * 15 14 13 26 26 H 0.96700 * 113.99603 * 90.00094 * 17 16 15 27 27 H 1.08006 * 119.95083 * 179.74240 * 18 16 15 28 28 H 1.08000 * 120.04383 * 180.23335 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1856 0.0000 4 1 2.9464 1.3492 0.7104 5 6 1.8189 2.1792 -0.9144 6 7 2.3363 3.3808 -0.7947 7 14 0.6389 1.8057 -2.3136 8 1 -0.7376 2.1982 -1.9183 9 1 1.0442 2.5701 -3.5205 10 1 0.6721 0.3518 -2.6143 11 6 2.1389 -1.1672 -0.0005 12 8 1.5314 -2.2201 -0.0383 13 6 3.6132 -1.1675 0.0448 14 6 4.2891 -2.0763 0.8643 15 6 5.6654 -2.0729 0.9040 16 6 6.3827 -1.1672 0.1311 17 8 7.7393 -1.1668 0.1735 18 6 5.7145 -0.2581 -0.6810 19 6 4.3385 -0.2585 -0.7310 20 1 -0.3633 -0.0949 1.0233 21 1 -0.3633 0.9337 -0.4294 22 1 -0.3633 -0.8388 -0.5938 23 1 2.1054 4.0742 -1.4325 24 1 3.7325 -2.7795 1.4660 25 1 6.1883 -2.7743 1.5371 26 1 8.1532 -1.7495 -0.4778 27 1 6.2756 0.4467 -1.2768 28 1 3.8202 0.4456 -1.3651 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049195.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:47 Heat of formation + Delta-G solvation = -41.260610 kcal Electronic energy + Delta-G solvation = -14821.571622 eV Core-core repulsion = 12224.314562 eV Total energy + Delta-G solvation = -2597.257060 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.61515 -38.36639 -35.97315 -34.96481 -32.02260 -30.54198 -29.69847 -26.47771 -24.97149 -22.37880 -22.12408 -19.35990 -18.07941 -17.71919 -16.31990 -15.55208 -15.16371 -14.73255 -14.67209 -13.95786 -13.56584 -12.94845 -12.88725 -12.70350 -12.35567 -11.83254 -11.60833 -11.53095 -11.34208 -10.94987 -10.43074 -10.10885 -10.05072 -9.33166 -8.80761 -8.49961 -8.07330 -7.75473 -6.52725 -4.28759 1.46412 1.89600 3.00304 3.15183 3.23311 3.57009 4.04046 4.20681 4.39895 4.56827 4.86981 5.38635 5.40710 5.73242 5.90367 6.04286 6.08841 6.23447 6.26879 6.46089 6.53460 6.76542 6.88350 7.09574 7.25444 7.34187 7.91059 7.99142 8.18683 8.84503 9.19236 9.55512 10.55545 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.032031 B = 0.010668 C = 0.008677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.942173 B = 2623.947177 C = 3226.228240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.464 5.464 3 C -0.346 4.346 4 H 0.104 0.896 5 C 0.067 3.933 6 N -0.862 5.862 7 Si 0.878 3.122 8 H -0.272 1.272 9 H -0.285 1.285 10 H -0.259 1.259 11 C 0.525 3.475 12 O -0.592 6.592 13 C -0.103 4.103 14 C -0.067 4.067 15 C -0.164 4.164 16 C 0.105 3.895 17 O -0.502 6.502 18 C -0.160 4.160 19 C -0.034 4.034 20 H 0.049 0.951 21 H 0.060 0.940 22 H 0.060 0.940 23 H 0.277 0.723 24 H 0.126 0.874 25 H 0.124 0.876 26 H 0.384 0.616 27 H 0.126 0.874 28 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.764 -5.838 -1.132 7.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.185 5.185 3 C -0.474 4.474 4 H 0.122 0.878 5 C -0.141 4.141 6 N -0.496 5.496 7 Si 0.705 3.295 8 H -0.198 1.198 9 H -0.212 1.212 10 H -0.183 1.183 11 C 0.314 3.686 12 O -0.478 6.478 13 C -0.106 4.106 14 C -0.086 4.086 15 C -0.183 4.183 16 C 0.061 3.939 17 O -0.312 6.312 18 C -0.178 4.178 19 C -0.053 4.053 20 H 0.067 0.933 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.144 0.856 25 H 0.142 0.858 26 H 0.239 0.761 27 H 0.144 0.856 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.354 -5.702 -0.760 7.215 hybrid contribution -0.493 -0.059 -0.994 1.111 sum 3.861 -5.761 -1.753 7.154 Atomic orbital electron populations 1.21788 0.82893 1.00967 1.01041 1.43505 1.04285 1.05662 1.65020 1.19081 1.19294 0.90449 1.18536 0.87827 1.25502 0.96627 0.94939 0.96992 1.69658 1.42380 1.01675 1.35920 0.86841 0.80946 0.79819 0.81907 1.19842 1.21200 1.18312 1.18378 0.86981 0.83792 0.79406 1.90646 1.70045 1.31762 1.55332 1.19921 0.93897 0.97370 0.99375 1.20991 0.93263 0.97141 0.97250 1.21135 0.94093 1.00549 1.02497 1.18643 0.82327 0.95940 0.96987 1.84765 1.16393 1.69018 1.61023 1.21361 0.94921 1.00622 1.00944 1.21630 0.92585 0.94497 0.96549 0.93271 0.92115 0.92146 0.91279 0.85598 0.85821 0.76058 0.85563 0.83214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.65 8.83 59.85 0.53 2.18 15 2 N -0.46 -11.28 2.41 -123.40 -0.30 -11.58 15 3 C -0.35 -8.84 6.61 -15.00 -0.10 -8.94 15 4 H 0.10 2.86 7.49 -52.48 -0.39 2.47 15 5 C 0.07 1.72 5.16 -17.46 -0.09 1.63 15 6 N -0.86 -23.05 13.95 55.50 0.77 -22.28 15 7 Si 0.88 19.86 24.88 -169.99 -4.23 15.63 15 8 H -0.27 -5.94 6.89 56.52 0.39 -5.55 15 9 H -0.29 -6.40 7.11 56.52 0.40 -5.99 15 10 H -0.26 -5.99 7.03 56.52 0.40 -5.59 15 11 C 0.52 12.64 7.27 -12.49 -0.09 12.55 15 12 O -0.59 -15.20 16.61 5.26 0.09 -15.11 15 13 C -0.10 -2.20 5.28 -104.96 -0.55 -2.75 15 14 C -0.07 -1.25 9.65 -39.20 -0.38 -1.63 15 15 C -0.16 -2.66 9.97 -39.50 -0.39 -3.06 15 16 C 0.11 1.72 6.71 -39.01 -0.26 1.46 15 17 O -0.50 -6.96 13.49 -18.88 -0.25 -7.22 15 18 C -0.16 -2.83 9.97 -39.50 -0.39 -3.23 15 19 C -0.03 -0.70 8.09 -39.20 -0.32 -1.01 15 20 H 0.05 0.98 8.14 -51.93 -0.42 0.56 15 21 H 0.06 1.30 4.28 -51.93 -0.22 1.08 15 22 H 0.06 1.28 7.56 -51.93 -0.39 0.89 15 23 H 0.28 6.92 8.31 -40.82 -0.34 6.58 15 24 H 0.13 2.20 8.06 -52.49 -0.42 1.78 15 25 H 0.12 1.67 8.06 -52.49 -0.42 1.24 15 26 H 0.38 3.24 9.06 45.56 0.41 3.66 15 27 H 0.13 2.01 8.06 -52.48 -0.42 1.59 15 28 H 0.15 3.30 6.27 -52.49 -0.33 2.97 15 LS Contribution 245.18 15.07 3.69 3.69 Total: -1.00 -29.94 245.18 -4.04 -33.98 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -1.77 Total: 5.67 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -2.05 Total: -2.80 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.48 Total: -33.86 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.17 Total: -22.32 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.23 Total: 15.63 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.94 -4.04 -33.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049195.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.278 kcal (2) G-P(sol) polarization free energy of solvation -29.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds