Wall clock time and date at job start Mon Mar 30 2020 02:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36901 * 119.99782 * 2 1 4 4 H 1.08003 * 120.00322 * 130.57301 * 3 2 1 5 5 C 1.39021 * 120.00438 * 310.57551 * 3 2 1 6 6 N 1.31378 * 120.00548 * 170.19150 * 5 3 2 7 7 Si 1.86801 * 119.99887 * 350.18763 * 5 3 2 8 8 H 1.48497 * 109.47180 * 94.74754 * 7 5 3 9 9 H 1.48501 * 109.47551 * 214.74998 * 7 5 3 10 10 H 1.48501 * 109.46970 * 334.74702 * 7 5 3 11 11 C 1.34774 * 120.00205 * 180.02562 * 2 1 3 12 12 O 1.21623 * 119.99937 * 2.02930 * 11 2 1 13 13 C 1.47493 * 120.00074 * 182.03216 * 11 2 1 14 14 C 1.39798 * 120.09615 * 137.65240 * 13 11 2 15 15 C 1.37686 * 119.90646 * 180.02562 * 14 13 11 16 16 C 1.39004 * 120.09253 * 0.02562 * 15 14 13 17 17 O 1.35725 * 119.90617 * 179.97438 * 16 15 14 18 18 C 1.39011 * 120.19141 * 0.24195 * 16 15 14 19 19 C 1.37687 * 120.09100 * 359.47958 * 18 16 15 20 20 H 1.08999 * 109.46863 * 264.70265 * 1 2 3 21 21 H 1.09002 * 109.46820 * 24.69947 * 1 2 3 22 22 H 1.09003 * 109.47057 * 144.70346 * 1 2 3 23 23 H 0.96999 * 120.00614 * 180.02562 * 6 5 3 24 24 H 1.08000 * 120.04352 * 359.97438 * 14 13 11 25 25 H 1.07996 * 119.95273 * 179.97438 * 15 14 13 26 26 H 0.96700 * 113.99603 * 90.00094 * 17 16 15 27 27 H 1.08006 * 119.95083 * 179.74240 * 18 16 15 28 28 H 1.08000 * 120.04383 * 180.23335 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1856 0.0000 4 1 2.9464 1.3492 0.7104 5 6 1.8189 2.1792 -0.9144 6 7 2.3363 3.3808 -0.7947 7 14 0.6389 1.8057 -2.3136 8 1 -0.7376 2.1982 -1.9183 9 1 1.0442 2.5701 -3.5205 10 1 0.6721 0.3518 -2.6143 11 6 2.1389 -1.1672 -0.0005 12 8 1.5314 -2.2201 -0.0383 13 6 3.6132 -1.1675 0.0448 14 6 4.2891 -2.0763 0.8643 15 6 5.6654 -2.0729 0.9040 16 6 6.3827 -1.1672 0.1311 17 8 7.7393 -1.1668 0.1735 18 6 5.7145 -0.2581 -0.6810 19 6 4.3385 -0.2585 -0.7310 20 1 -0.3633 -0.0949 1.0233 21 1 -0.3633 0.9337 -0.4294 22 1 -0.3633 -0.8388 -0.5938 23 1 2.1054 4.0742 -1.4325 24 1 3.7325 -2.7795 1.4660 25 1 6.1883 -2.7743 1.5371 26 1 8.1532 -1.7495 -0.4778 27 1 6.2756 0.4467 -1.2768 28 1 3.8202 0.4456 -1.3651 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049195.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:46 Heat of formation + Delta-G solvation = -62.815057 kcal Electronic energy + Delta-G solvation = -14822.506293 eV Core-core repulsion = 12224.314562 eV Total energy + Delta-G solvation = -2598.191731 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.22759 -39.89546 -37.31325 -36.88332 -33.99498 -31.96613 -31.19168 -28.21945 -26.87705 -23.89201 -23.55331 -21.15533 -19.55512 -19.28084 -18.16910 -17.24508 -16.55674 -16.45944 -16.24233 -15.64796 -15.11262 -14.64532 -14.54058 -14.36645 -14.08692 -13.45848 -13.31210 -12.94936 -12.84515 -12.78964 -12.27414 -11.94742 -11.38950 -11.19565 -10.69067 -9.94190 -9.67127 -9.51078 -8.50387 -6.29445 0.01157 0.47760 1.20128 1.31173 1.42039 1.84558 2.16170 2.57037 2.75703 2.97536 3.31062 4.00735 4.02971 4.10147 4.35195 4.46495 4.53125 4.63990 4.74421 4.90106 5.13363 5.33233 5.42688 5.45602 5.61275 5.88172 6.04601 6.16443 6.88638 6.90681 7.26054 7.64787 8.61384 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.032031 B = 0.010668 C = 0.008677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.942173 B = 2623.947177 C = 3226.228240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.476 5.476 3 C -0.338 4.338 4 H 0.074 0.926 5 C 0.036 3.964 6 N -0.897 5.897 7 Si 0.929 3.071 8 H -0.254 1.254 9 H -0.280 1.280 10 H -0.269 1.269 11 C 0.520 3.480 12 O -0.614 6.614 13 C -0.139 4.139 14 C -0.068 4.068 15 C -0.154 4.154 16 C 0.126 3.874 17 O -0.502 6.502 18 C -0.165 4.165 19 C -0.047 4.047 20 H 0.065 0.935 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.282 0.718 24 H 0.133 0.867 25 H 0.160 0.840 26 H 0.413 0.587 27 H 0.142 0.858 28 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.766 -6.696 -1.181 8.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.196 5.196 3 C -0.465 4.465 4 H 0.092 0.908 5 C -0.169 4.169 6 N -0.533 5.533 7 Si 0.753 3.247 8 H -0.180 1.180 9 H -0.207 1.207 10 H -0.194 1.194 11 C 0.311 3.689 12 O -0.501 6.501 13 C -0.142 4.142 14 C -0.087 4.087 15 C -0.172 4.172 16 C 0.081 3.919 17 O -0.316 6.316 18 C -0.183 4.183 19 C -0.066 4.066 20 H 0.084 0.916 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.092 0.908 24 H 0.151 0.849 25 H 0.178 0.822 26 H 0.273 0.727 27 H 0.160 0.840 28 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.366 -6.566 -0.815 8.519 hybrid contribution -0.634 0.142 -0.929 1.133 sum 4.732 -6.424 -1.744 8.167 Atomic orbital electron populations 1.21901 0.81610 1.01299 1.02285 1.43642 1.05292 1.05349 1.65348 1.18742 1.18926 0.90895 1.17975 0.90802 1.25959 0.97952 0.94536 0.98485 1.69721 1.43976 1.02538 1.37071 0.86051 0.80145 0.78890 0.79573 1.17955 1.20650 1.19378 1.18863 0.88327 0.83326 0.78404 1.90606 1.70941 1.32248 1.56328 1.19896 0.92552 0.99741 1.01991 1.21139 0.94472 0.96415 0.96659 1.21446 0.93042 1.00625 1.02121 1.18625 0.83497 0.94507 0.95231 1.84700 1.14624 1.70058 1.62193 1.21509 0.93859 1.01412 1.01556 1.21400 0.93838 0.94453 0.96914 0.91636 0.91774 0.91704 0.90794 0.84885 0.82240 0.72680 0.84049 0.85771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 3.07 8.83 127.77 1.13 4.19 15 2 N -0.48 -23.37 2.41 -662.56 -1.59 -24.97 15 3 C -0.34 -17.62 6.61 84.09 0.56 -17.06 15 4 H 0.07 4.25 7.49 -2.91 -0.02 4.23 15 5 C 0.04 1.84 5.16 84.95 0.44 2.28 15 6 N -0.90 -48.55 13.95 21.68 0.30 -48.25 15 7 Si 0.93 40.78 24.88 68.60 1.71 42.48 15 8 H -0.25 -10.40 6.89 99.48 0.69 -9.71 15 9 H -0.28 -12.00 7.11 99.48 0.71 -11.29 15 10 H -0.27 -12.19 7.03 99.48 0.70 -11.49 15 11 C 0.52 25.36 7.27 86.68 0.63 25.99 15 12 O -0.61 -31.68 16.61 -4.10 -0.07 -31.75 15 13 C -0.14 -5.99 5.28 -20.08 -0.11 -6.10 15 14 C -0.07 -2.43 9.65 22.52 0.22 -2.21 15 15 C -0.15 -4.51 9.97 22.32 0.22 -4.29 15 16 C 0.13 3.75 6.71 22.64 0.15 3.90 15 17 O -0.50 -11.79 13.49 -90.48 -1.22 -13.01 15 18 C -0.16 -5.64 9.97 22.32 0.22 -5.42 15 19 C -0.05 -1.96 8.09 22.52 0.18 -1.77 15 20 H 0.07 2.57 8.14 -2.39 -0.02 2.55 15 21 H 0.06 2.68 4.28 -2.39 -0.01 2.67 15 22 H 0.06 2.71 7.56 -2.39 -0.02 2.69 15 23 H 0.28 14.17 8.31 -92.71 -0.77 13.40 15 24 H 0.13 4.49 8.06 -2.91 -0.02 4.47 15 25 H 0.16 3.54 8.06 -2.91 -0.02 3.51 15 26 H 0.41 5.01 9.06 -74.06 -0.67 4.34 15 27 H 0.14 4.30 8.06 -2.91 -0.02 4.28 15 28 H 0.12 5.70 6.27 -2.91 -0.02 5.68 15 Total: -1.00 -63.94 245.18 3.26 -60.68 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.49 Total: 15.31 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 3.64 Total: -0.49 kcal Atomic # 7 Polarization: -71.93 SS G_CDS: -1.29 Total: -73.22 kcal Atomic # 8 Polarization: -43.47 SS G_CDS: -1.29 Total: -44.76 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 1.71 Total: 42.48 kcal Total: -63.94 3.26 -60.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049195.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.139 kcal (2) G-P(sol) polarization free energy of solvation -63.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds