Wall clock time and date at job start Mon Mar 30 2020 02:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 119.99531 * 2 1 4 4 O 1.42906 * 109.46763 * 135.00651 * 3 2 1 5 5 C 1.36022 * 116.99867 * 180.02562 * 4 3 2 6 6 C 1.36683 * 120.37293 * 359.97438 * 5 4 3 7 7 C 1.40370 * 119.27358 * 180.02562 * 6 5 4 8 8 C 1.35221 * 120.00151 * 0.02562 * 7 6 5 9 9 N 1.36270 * 120.75865 * 0.02562 * 8 7 6 10 10 C 1.36999 * 119.63256 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99656 * 149.22150 * 10 9 8 12 12 C 1.39141 * 120.00103 * 329.22540 * 10 9 8 13 13 N 1.31203 * 120.00274 * 161.15609 * 12 10 9 14 14 Si 1.86806 * 119.99876 * 341.16083 * 12 10 9 15 15 H 1.48496 * 109.47164 * 95.35130 * 14 12 10 16 16 H 1.48501 * 109.46866 * 215.34831 * 14 12 10 17 17 H 1.48503 * 109.47150 * 335.34655 * 14 12 10 18 18 C 1.34666 * 120.73707 * 359.97438 * 9 8 7 19 19 O 1.22033 * 120.01511 * 180.02562 * 18 9 8 20 20 H 1.07998 * 120.00483 * 359.97438 * 1 2 3 21 21 H 1.08007 * 119.99404 * 179.97438 * 1 2 3 22 22 H 1.08001 * 120.00028 * 180.02562 * 2 1 3 23 23 H 1.08991 * 109.47292 * 15.00761 * 3 2 1 24 24 H 1.09002 * 109.47252 * 254.99754 * 3 2 1 25 25 H 1.08008 * 120.36497 * 359.75363 * 6 5 4 26 26 H 1.07994 * 119.99908 * 180.02562 * 7 6 5 27 27 H 1.08004 * 119.61957 * 179.97438 * 8 7 6 28 28 H 0.96993 * 120.00518 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9097 2.3463 1.0790 6 6 3.6690 3.4549 0.3165 7 6 4.4918 4.5823 0.4655 8 6 5.5097 4.5637 1.3554 9 7 5.7509 3.4585 2.1152 10 6 6.7882 3.4651 3.0102 11 1 6.7214 2.8845 3.9184 12 6 7.9276 4.2198 2.7491 13 7 8.7461 4.5317 3.7260 14 14 8.2921 4.7891 1.0076 15 1 7.7756 6.1685 0.8195 16 1 9.7593 4.7744 0.7790 17 1 7.6312 3.8767 0.0401 18 6 4.9805 2.3604 1.9970 19 8 5.2082 1.3781 2.6844 20 1 -0.5401 0.9352 0.0004 21 1 -0.5399 -0.9354 -0.0004 22 1 1.8500 -0.9353 -0.0004 23 1 1.3855 2.1160 0.2661 24 1 2.4755 1.4869 -0.9926 25 1 2.8573 3.4617 -0.3960 26 1 4.3119 5.4646 -0.1307 27 1 6.1392 5.4345 1.4647 28 1 9.5401 5.0581 3.5441 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057793046.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:44 Heat of formation + Delta-G solvation = -8.412997 kcal Electronic energy + Delta-G solvation = -14621.259862 eV Core-core repulsion = 12025.427181 eV Total energy + Delta-G solvation = -2595.832681 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.49286 -38.20303 -35.74604 -34.28038 -33.48102 -31.82669 -28.50280 -26.57791 -25.77449 -22.77319 -21.72407 -19.84353 -18.76374 -16.89160 -16.68312 -16.38892 -15.73450 -15.20930 -14.76321 -14.28179 -13.74422 -13.50929 -13.10432 -12.83430 -12.66889 -11.92137 -11.61359 -11.35714 -11.10872 -10.92663 -10.73681 -10.55658 -10.18054 -9.65020 -9.46516 -8.82152 -8.62850 -7.00107 -6.74769 -4.53173 1.80093 2.09662 2.66341 2.84359 3.03014 3.07262 3.54545 3.72582 4.25116 4.48165 4.92311 5.01354 5.11262 5.41163 5.49468 5.50165 5.60121 5.76415 5.91374 6.06714 6.50468 6.59366 6.69940 6.82888 6.99695 7.15780 7.72674 7.90598 8.11558 8.40988 8.72398 9.40399 10.06476 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.053376 B = 0.007853 C = 0.007195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.452615 B = 3564.815365 C = 3890.877367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.143 4.143 3 C 0.086 3.914 4 O -0.294 6.294 5 C -0.024 4.024 6 C -0.152 4.152 7 C -0.228 4.228 8 C 0.044 3.956 9 N -0.299 5.299 10 C -0.329 4.329 11 H 0.133 0.867 12 C 0.070 3.930 13 N -0.815 5.815 14 Si 0.883 3.117 15 H -0.263 1.263 16 H -0.276 1.276 17 H -0.249 1.249 18 C 0.475 3.525 19 O -0.562 6.562 20 H 0.098 0.902 21 H 0.104 0.896 22 H 0.118 0.882 23 H 0.061 0.939 24 H 0.065 0.935 25 H 0.119 0.881 26 H 0.128 0.872 27 H 0.145 0.855 28 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.225 0.916 -9.280 13.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.161 4.161 3 C 0.011 3.989 4 O -0.207 6.207 5 C -0.073 4.073 6 C -0.175 4.175 7 C -0.251 4.251 8 C -0.089 4.089 9 N 0.006 4.994 10 C -0.457 4.457 11 H 0.150 0.850 12 C -0.144 4.144 13 N -0.444 5.444 14 Si 0.708 3.292 15 H -0.189 1.189 16 H -0.202 1.202 17 H -0.173 1.173 18 C 0.279 3.721 19 O -0.449 6.449 20 H 0.116 0.884 21 H 0.122 0.878 22 H 0.136 0.864 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.136 0.864 26 H 0.146 0.854 27 H 0.163 0.837 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.830 0.166 -8.584 12.316 hybrid contribution 0.268 0.633 -1.056 1.260 sum -8.562 0.799 -9.640 12.918 Atomic orbital electron populations 1.23787 0.95397 1.02157 1.00801 1.22753 0.95606 0.98235 0.99515 1.21690 0.88565 0.96037 0.92640 1.86082 1.41467 1.35247 1.57904 1.19386 0.96609 0.88122 1.03213 1.20984 1.01638 0.93523 1.01395 1.19850 0.99643 0.99870 1.05749 1.21705 0.99212 0.91389 0.96589 1.41476 1.22746 1.08827 1.26329 1.19782 0.94143 1.30286 1.01493 0.84958 1.25541 0.95042 0.94505 0.99350 1.69596 1.12312 1.30125 1.32366 0.86695 0.78968 0.80026 0.83538 1.18875 1.20175 1.17278 1.16040 0.85274 0.83516 0.87258 1.90828 1.73190 1.32564 1.48274 0.88418 0.87785 0.86390 0.92105 0.91715 0.86350 0.85415 0.83745 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 14.31 29.01 0.42 -1.53 15 2 C -0.14 -1.87 9.89 -36.03 -0.36 -2.23 15 3 C 0.09 1.31 5.16 36.01 0.19 1.50 15 4 O -0.29 -6.28 9.92 -36.40 -0.36 -6.64 15 5 C -0.02 -0.54 6.71 -39.08 -0.26 -0.80 15 6 C -0.15 -2.89 9.09 -39.34 -0.36 -3.24 15 7 C -0.23 -4.30 10.01 -39.85 -0.40 -4.70 15 8 C 0.04 0.97 7.46 -16.65 -0.12 0.84 15 9 N -0.30 -7.74 2.52 -64.50 -0.16 -7.90 15 10 C -0.33 -9.12 9.49 -14.91 -0.14 -9.27 15 11 H 0.13 4.05 7.74 -52.49 -0.41 3.64 15 12 C 0.07 1.79 5.31 -17.48 -0.09 1.70 15 13 N -0.81 -21.38 13.95 55.50 0.77 -20.61 15 14 Si 0.88 18.98 24.67 -169.99 -4.19 14.79 15 15 H -0.26 -5.12 6.73 56.52 0.38 -4.74 15 16 H -0.28 -5.79 7.11 56.52 0.40 -5.39 15 17 H -0.25 -5.54 6.92 56.52 0.39 -5.15 15 18 C 0.47 12.79 7.38 -15.24 -0.11 12.68 15 19 O -0.56 -17.13 16.64 -11.70 -0.19 -17.33 15 20 H 0.10 0.92 7.90 -52.49 -0.41 0.50 15 21 H 0.10 0.90 8.06 -52.48 -0.42 0.48 15 22 H 0.12 1.53 8.06 -52.49 -0.42 1.10 15 23 H 0.06 0.83 7.40 -51.93 -0.38 0.45 15 24 H 0.06 0.89 7.67 -51.93 -0.40 0.49 15 25 H 0.12 1.79 6.32 -52.48 -0.33 1.46 15 26 H 0.13 1.92 8.06 -52.49 -0.42 1.50 15 27 H 0.15 2.97 4.65 -52.48 -0.24 2.73 15 28 H 0.29 6.82 8.30 -40.82 -0.34 6.48 15 LS Contribution 247.44 15.07 3.73 3.73 Total: -1.00 -31.19 247.44 -4.27 -35.46 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -2.61 Total: 3.55 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -1.25 Total: -5.05 kcal Atomic # 7 Polarization: -29.12 SS G_CDS: 0.61 Total: -28.51 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.56 Total: -23.97 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.19 Total: 14.79 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.19 -4.27 -35.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057793046.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.045 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds