Wall clock time and date at job start Mon Mar 30 2020 03:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86804 * 120.00249 * 2 1 4 4 H 1.48504 * 109.47130 * 270.00110 * 3 2 1 5 5 H 1.48496 * 109.46845 * 29.99963 * 3 2 1 6 6 H 1.48497 * 109.47135 * 149.99809 * 3 2 1 7 7 C 1.40057 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99896 * 179.97438 * 7 2 1 9 9 C 1.46373 * 119.99705 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99951 * 359.97438 * 9 7 2 11 11 N 1.34774 * 120.00047 * 180.02562 * 9 7 2 12 12 C 1.47086 * 120.97921 * 179.97438 * 11 9 7 13 13 C 1.53273 * 109.15831 * 116.10942 * 12 11 9 14 14 N 1.46433 * 109.23758 * 45.78915 * 13 12 11 15 15 C 1.36407 * 127.54586 * 161.54679 * 14 13 12 16 16 C 1.34842 * 106.73976 * 179.54861 * 15 14 13 17 17 N 1.34303 * 108.07315 * 0.08081 * 16 15 14 18 18 C 1.29987 * 109.16069 * 0.14886 * 17 16 15 19 19 C 1.47456 * 120.97419 * 359.71377 * 11 9 7 20 20 H 0.96997 * 119.99581 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.52168 * 236.01248 * 12 11 9 22 22 H 1.09005 * 109.51841 * 356.14164 * 12 11 9 23 23 H 1.08999 * 109.51085 * 165.72242 * 13 12 11 24 24 H 1.09001 * 109.50906 * 285.86135 * 13 12 11 25 25 H 1.08005 * 126.62935 * 359.52648 * 15 14 13 26 26 H 1.08004 * 125.96508 * 180.02562 * 16 15 14 27 27 H 1.09005 * 109.93817 * 342.87278 * 19 11 9 28 28 H 1.09002 * 109.93771 * 104.10473 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4383 2.6526 0.7000 6 1 3.5383 1.4401 0.7001 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4804 0.0005 11 7 1.9489 -3.6477 0.0016 12 6 1.2353 -4.9339 0.0022 13 6 1.5489 -5.6837 -1.2973 14 7 2.9893 -5.6227 -1.5540 15 6 3.7210 -6.4239 -2.3806 16 6 4.9972 -5.9947 -2.3078 17 7 5.0401 -4.9579 -1.4552 18 6 3.8446 -4.7323 -0.9974 19 6 3.4232 -3.6729 -0.0036 20 1 -0.4849 0.8401 -0.0004 21 1 1.5604 -5.5304 0.8545 22 1 0.1622 -4.7549 0.0708 23 1 1.2401 -6.7246 -1.2006 24 1 1.0117 -5.2193 -2.1243 25 1 3.3499 -7.2438 -2.9778 26 1 5.8383 -6.4124 -2.8412 27 1 3.8105 -2.7010 -0.3096 28 1 3.7942 -3.9260 0.9897 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062255291.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:24 Heat of formation + Delta-G solvation = 12.957996 kcal Electronic energy + Delta-G solvation = -14919.747425 eV Core-core repulsion = 12357.134211 eV Total energy + Delta-G solvation = -2562.613214 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.17652 -39.76224 -36.79712 -34.69813 -34.68755 -31.05572 -30.68879 -28.34252 -26.57450 -24.72031 -22.45340 -21.55285 -20.17316 -18.42142 -18.24682 -17.62680 -17.02062 -16.15502 -15.98535 -15.55717 -14.96366 -14.73358 -14.68616 -13.91814 -13.64256 -13.53087 -13.14494 -13.12759 -12.76054 -12.59675 -12.23448 -12.01214 -11.00573 -10.95799 -10.59748 -9.94915 -9.46639 -9.21169 -8.34784 -6.90812 1.11284 1.40365 1.40738 1.56440 1.78748 2.16700 2.22297 2.38369 2.58799 3.39153 3.46734 3.69768 3.89623 4.06281 4.20279 4.49501 4.54692 4.58403 4.60932 4.79101 4.81108 5.32744 5.37503 5.50914 5.88615 5.98379 6.11407 6.28169 6.83091 7.13107 7.22383 8.34381 8.59634 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.039314 B = 0.008794 C = 0.007553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.050252 B = 3183.274740 C = 3706.080562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.034 3.966 3 Si 0.992 3.008 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.248 1.248 7 C -0.569 4.569 8 H 0.091 0.909 9 C 0.547 3.453 10 O -0.620 6.620 11 N -0.650 5.650 12 C 0.101 3.899 13 C 0.097 3.903 14 N -0.454 5.454 15 C -0.048 4.048 16 C -0.056 4.056 17 N -0.518 5.518 18 C 0.177 3.823 19 C 0.212 3.788 20 H 0.276 0.724 21 H 0.083 0.917 22 H 0.090 0.910 23 H 0.138 0.862 24 H 0.073 0.927 25 H 0.214 0.786 26 H 0.196 0.804 27 H 0.102 0.898 28 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.301 -10.239 -2.779 12.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.182 4.182 3 Si 0.811 3.189 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.171 1.171 7 C -0.605 4.605 8 H 0.109 0.891 9 C 0.354 3.646 10 O -0.507 6.507 11 N -0.388 5.388 12 C -0.023 4.023 13 C -0.026 4.026 14 N -0.137 5.137 15 C -0.181 4.181 16 C -0.203 4.203 17 N -0.238 5.238 18 C -0.087 4.087 19 C 0.087 3.913 20 H 0.086 0.914 21 H 0.101 0.899 22 H 0.109 0.891 23 H 0.156 0.844 24 H 0.092 0.908 25 H 0.231 0.769 26 H 0.213 0.787 27 H 0.120 0.880 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.976 -9.729 -2.530 11.694 hybrid contribution -0.614 0.231 -0.321 0.730 sum 5.362 -9.498 -2.851 11.273 Atomic orbital electron populations 1.70153 1.09378 1.29134 1.35870 1.26912 0.95493 1.04734 0.91083 0.85092 0.79035 0.75345 0.79399 1.18895 1.19529 1.17085 1.21496 0.94835 0.89805 1.54319 0.89098 1.18543 0.86587 0.83563 0.75898 1.90557 1.15652 1.86921 1.57554 1.48237 1.05405 1.05592 1.79555 1.21641 0.99626 0.84838 0.96188 1.22457 0.76930 1.04157 0.99075 1.45527 1.09310 1.25148 1.33676 1.23262 0.92384 1.01321 1.01107 1.22900 0.97674 0.97158 1.02601 1.69952 1.21106 1.18311 1.14416 1.23723 0.85986 0.96949 1.02039 1.19979 0.80389 0.95747 0.95190 0.91383 0.89933 0.89133 0.84441 0.90834 0.76916 0.78745 0.88001 0.89093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.75 11.83 21.84 0.26 -48.50 15 2 C 0.03 1.85 5.50 85.31 0.47 2.32 15 3 Si 0.99 40.52 29.56 68.60 2.03 42.54 15 4 H -0.26 -10.43 7.11 99.48 0.71 -9.72 15 5 H -0.27 -10.61 7.11 99.48 0.71 -9.90 15 6 H -0.25 -9.45 7.11 99.48 0.71 -8.74 15 7 C -0.57 -31.63 8.83 24.83 0.22 -31.41 15 8 H 0.09 4.60 5.83 -2.91 -0.02 4.58 15 9 C 0.55 30.88 7.65 86.36 0.66 31.54 15 10 O -0.62 -39.86 14.46 -4.33 -0.06 -39.92 15 11 N -0.65 -28.97 2.97 -825.73 -2.45 -31.42 15 12 C 0.10 3.55 6.43 86.36 0.55 4.10 15 13 C 0.10 2.71 7.15 86.48 0.62 3.32 15 14 N -0.45 -14.19 3.13 -513.63 -1.61 -15.80 15 15 C -0.05 -1.20 11.63 83.20 0.97 -0.23 15 16 C -0.06 -1.60 11.87 83.53 0.99 -0.60 15 17 N -0.52 -18.89 11.24 -187.36 -2.11 -21.00 15 18 C 0.18 6.51 7.78 138.32 1.08 7.59 15 19 C 0.21 8.32 6.64 85.62 0.57 8.88 15 20 H 0.28 14.93 8.29 -92.71 -0.77 14.16 15 21 H 0.08 2.49 8.14 -2.39 -0.02 2.47 15 22 H 0.09 3.54 7.01 -2.38 -0.02 3.52 15 23 H 0.14 2.53 8.14 -2.39 -0.02 2.51 15 24 H 0.07 2.25 8.14 -2.39 -0.02 2.23 15 25 H 0.21 3.30 8.06 -2.91 -0.02 3.28 15 26 H 0.20 4.12 8.06 -2.91 -0.02 4.10 15 27 H 0.10 4.26 5.66 -2.38 -0.01 4.25 15 28 H 0.09 3.20 8.14 -2.39 -0.02 3.18 15 Total: -1.00 -76.03 243.46 3.36 -72.67 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 1.18 Total: 15.91 kcal Atomic # 6 Polarization: 19.39 SS G_CDS: 6.13 Total: 25.51 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -5.91 Total: -116.72 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -0.06 Total: -39.92 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.54 kcal Total: -76.03 3.36 -72.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062255291.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.623 kcal (2) G-P(sol) polarization free energy of solvation -76.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds