Wall clock time and date at job start Mon Mar 30 2020 02:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31216 * 1 3 3 Si 1.86795 * 119.99531 * 2 1 4 4 H 1.48498 * 109.47090 * 239.99761 * 3 2 1 5 5 H 1.48494 * 109.47507 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47103 * 120.00115 * 3 2 1 7 7 C 1.39065 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99949 * 179.97438 * 7 2 1 9 9 N 1.37482 * 119.99780 * 0.02562 * 7 2 1 10 10 N 1.40165 * 126.57387 * 7.44038 * 9 7 2 11 11 N 1.28687 * 108.72919 * 180.02562 * 10 9 7 12 12 C 1.34728 * 109.68702 * 359.97438 * 11 10 9 13 13 C 1.46720 * 125.90992 * 179.97438 * 12 11 10 14 14 O 1.21317 * 119.99998 * 174.42614 * 13 12 11 15 15 C 1.35433 * 126.56512 * 187.43953 * 9 7 2 16 16 C 1.50698 * 126.73313 * 359.97438 * 15 9 7 17 17 C 1.53787 * 113.61307 * 44.06899 * 16 15 9 18 18 C 1.53781 * 87.08118 * 220.02264 * 17 16 15 19 19 C 1.53783 * 87.08275 * 25.43173 * 18 17 16 20 20 H 0.96999 * 120.00553 * 0.02562 * 1 2 3 21 21 H 1.07999 * 120.00017 * 354.42211 * 13 12 11 22 22 H 1.08996 * 112.85443 * 175.37619 * 16 15 9 23 23 H 1.09004 * 113.61422 * 334.56850 * 17 16 15 24 24 H 1.08996 * 113.61318 * 105.47662 * 17 16 15 25 25 H 1.08999 * 113.61067 * 270.88726 * 18 17 16 26 26 H 1.08996 * 113.69465 * 139.99156 * 18 17 16 27 27 H 1.09003 * 113.61836 * 220.02231 * 19 18 17 28 28 H 1.08999 * 113.61104 * 89.11391 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3122 0.0000 0.0000 3 14 2.2460 1.6178 0.0000 4 1 3.0998 1.6965 -1.2125 5 1 1.2810 2.7464 0.0006 6 1 3.0998 1.6965 1.2125 7 6 2.0075 -1.2043 0.0005 8 1 3.0875 -1.2043 0.0001 9 7 1.3201 -2.3949 0.0005 10 7 -0.0641 -2.5602 -0.1457 11 7 -0.3380 -3.8165 -0.0939 12 6 0.7966 -4.5216 0.0808 13 6 0.8946 -5.9815 0.1886 14 8 1.9832 -6.5140 0.2439 15 6 1.8507 -3.6329 0.1419 16 6 3.3068 -3.9735 0.3289 17 6 4.0271 -3.0648 1.3390 18 6 5.2289 -3.0835 0.3797 19 6 4.2237 -3.3704 -0.7483 20 1 -0.4851 0.8400 -0.0004 21 1 -0.0025 -6.5822 0.2189 22 1 3.4743 -5.0369 0.4993 23 1 3.5691 -2.0815 1.4459 24 1 4.2251 -3.5470 2.2962 25 1 5.9227 -3.9034 0.5650 26 1 5.7285 -2.1195 0.2846 27 1 4.5804 -4.0992 -1.4762 28 1 3.8194 -2.4706 -1.2120 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062295936.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:42 Heat of formation + Delta-G solvation = 48.644499 kcal Electronic energy + Delta-G solvation = -15113.954628 eV Core-core repulsion = 12552.888897 eV Total energy + Delta-G solvation = -2561.065731 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.43020 -39.45334 -39.28056 -36.07349 -33.47554 -31.40902 -28.29276 -26.56984 -26.41613 -24.60199 -23.16725 -21.13692 -20.46364 -19.60357 -17.33657 -16.85444 -16.58923 -16.27334 -16.06032 -15.74415 -15.17858 -14.68070 -13.84276 -13.74191 -13.44387 -13.35892 -13.13095 -12.96794 -12.32571 -12.17410 -11.86089 -11.74437 -11.30494 -11.28458 -11.05282 -10.67114 -10.45125 -9.42548 -8.78344 -6.71338 0.50972 1.08715 1.34468 1.53054 1.60091 2.00025 2.47901 2.55036 2.84332 3.60094 3.81086 3.87633 3.89108 4.16337 4.27798 4.55070 4.60217 4.75994 4.81410 4.94803 4.98683 5.10638 5.10794 5.17393 5.44002 5.60425 5.74116 5.86835 6.43878 6.63376 7.05148 7.92972 8.21648 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.028140 B = 0.012568 C = 0.009073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.785400 B = 2227.318886 C = 3085.207395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.002 3.998 3 Si 1.016 2.984 4 H -0.248 1.248 5 H -0.270 1.270 6 H -0.246 1.246 7 C -0.332 4.332 8 H 0.155 0.845 9 N -0.145 5.145 10 N -0.136 5.136 11 N -0.294 5.294 12 C -0.197 4.197 13 C 0.445 3.555 14 O -0.505 6.505 15 C -0.034 4.034 16 C -0.037 4.037 17 C -0.149 4.149 18 C -0.116 4.116 19 C -0.139 4.139 20 H 0.291 0.709 21 H 0.142 0.858 22 H 0.118 0.882 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.100 0.900 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.050 -0.373 0.988 9.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.214 4.214 3 Si 0.833 3.167 4 H -0.172 1.172 5 H -0.194 1.194 6 H -0.169 1.169 7 C -0.467 4.467 8 H 0.172 0.828 9 N 0.089 4.911 10 N -0.114 5.114 11 N -0.159 5.159 12 C -0.342 4.342 13 C 0.306 3.694 14 O -0.379 6.379 15 C -0.174 4.174 16 C -0.058 4.058 17 C -0.186 4.186 18 C -0.153 4.153 19 C -0.177 4.177 20 H 0.102 0.898 21 H 0.158 0.842 22 H 0.136 0.864 23 H 0.098 0.902 24 H 0.091 0.909 25 H 0.119 0.881 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.925 0.118 0.805 7.967 hybrid contribution 0.331 0.379 0.044 0.505 sum 8.256 0.497 0.849 8.314 Atomic orbital electron populations 1.70234 1.08684 1.31037 1.32651 1.27119 0.96523 1.04775 0.93009 0.84681 0.78020 0.72993 0.81038 1.17181 1.19426 1.16919 1.21134 0.93875 0.80274 1.51444 0.82817 1.46448 1.06598 1.05816 1.32253 1.82400 0.90870 1.07970 1.30116 1.74356 1.25843 1.00667 1.14996 1.22678 0.89517 0.98940 1.23027 1.23058 0.93155 0.85340 0.67887 1.90373 1.33693 1.74234 1.39587 1.22172 0.97745 0.84642 1.12859 1.21241 0.84516 1.01158 0.98863 1.23145 0.97260 1.00435 0.97795 1.22727 0.95362 1.03199 0.94058 1.23000 0.96877 1.00804 0.97039 0.89843 0.84215 0.86398 0.90172 0.90866 0.88144 0.89834 0.90759 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.10 11.89 21.67 0.26 -41.84 15 2 C 0.00 0.11 5.50 84.98 0.47 0.57 15 3 Si 1.02 34.25 29.55 68.60 2.03 36.28 15 4 H -0.25 -7.83 7.11 99.48 0.71 -7.12 15 5 H -0.27 -8.94 7.11 99.48 0.71 -8.23 15 6 H -0.25 -7.66 7.11 99.48 0.71 -6.95 15 7 C -0.33 -16.16 7.95 84.01 0.67 -15.49 15 8 H 0.15 6.54 4.43 -2.91 -0.01 6.53 15 9 N -0.15 -7.76 3.73 -177.19 -0.66 -8.42 15 10 N -0.14 -7.97 11.68 37.02 0.43 -7.54 15 11 N -0.29 -15.92 12.40 -49.58 -0.61 -16.53 15 12 C -0.20 -9.50 7.09 40.86 0.29 -9.21 15 13 C 0.45 17.19 11.76 70.04 0.82 18.02 15 14 O -0.51 -20.40 15.41 -3.14 -0.05 -20.45 15 15 C -0.03 -1.66 6.23 41.95 0.26 -1.40 15 16 C -0.04 -1.46 3.91 -11.01 -0.04 -1.50 15 17 C -0.15 -5.00 7.17 31.12 0.22 -4.77 15 18 C -0.12 -3.11 8.08 31.12 0.25 -2.86 15 19 C -0.14 -4.67 7.19 31.12 0.22 -4.44 15 20 H 0.29 13.87 8.30 -92.71 -0.77 13.11 15 21 H 0.14 4.16 8.06 -2.91 -0.02 4.14 15 22 H 0.12 4.57 5.90 -2.39 -0.01 4.56 15 23 H 0.08 3.02 5.28 -2.39 -0.01 3.01 15 24 H 0.07 2.24 8.14 -2.39 -0.02 2.22 15 25 H 0.10 2.23 8.14 -2.39 -0.02 2.21 15 26 H 0.08 1.95 8.14 -2.39 -0.02 1.93 15 27 H 0.07 2.27 8.14 -2.39 -0.02 2.25 15 28 H 0.07 2.60 6.11 -2.39 -0.01 2.59 15 Total: -1.00 -65.12 241.51 5.75 -59.37 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 1.20 Total: 20.24 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 3.17 Total: -21.09 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -0.58 Total: -74.34 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.05 Total: -20.45 kcal Atomic # 14 Polarization: 34.25 SS G_CDS: 2.03 Total: 36.28 kcal Total: -65.12 5.75 -59.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062295936.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.010 kcal (2) G-P(sol) polarization free energy of solvation -65.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds