Wall clock time and date at job start Mon Mar 30 2020 02:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31049 * 1 3 3 Si 1.86800 * 119.99677 * 2 1 4 4 H 1.48499 * 109.47414 * 274.98473 * 3 2 1 5 5 H 1.48499 * 109.47393 * 34.98916 * 3 2 1 6 6 H 1.48501 * 109.46996 * 154.98543 * 3 2 1 7 7 C 1.39352 * 120.00493 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00538 * 186.24542 * 7 2 1 9 9 N 1.36621 * 119.99909 * 6.23484 * 7 2 1 10 10 N 1.39770 * 119.96073 * 353.29583 * 9 7 2 11 11 C 1.31255 * 121.17619 * 179.88248 * 10 9 7 12 12 C 1.39888 * 120.24151 * 359.79906 * 11 10 9 13 13 C 1.36695 * 119.65983 * 0.36412 * 12 11 10 14 14 C 1.34832 * 119.96157 * 173.29607 * 9 7 2 15 15 O 1.22011 * 120.36562 * 0.24710 * 14 9 7 16 16 C 1.50588 * 121.74082 * 180.49246 * 12 11 10 17 17 N 1.46660 * 110.38039 * 342.41371 * 16 12 11 18 18 C 1.47134 * 110.33520 * 52.73456 * 17 16 12 19 19 C 1.50793 * 118.44444 * 179.75099 * 11 10 9 20 20 H 0.96994 * 120.00305 * 359.97438 * 1 2 3 21 21 H 1.08001 * 120.22113 * 179.76472 * 13 12 11 22 22 H 1.08999 * 109.32092 * 222.13572 * 16 12 11 23 23 H 1.09005 * 109.32064 * 102.68842 * 16 12 11 24 24 H 1.00898 * 111.00083 * 289.26199 * 17 16 12 25 25 H 1.09007 * 109.60388 * 47.88743 * 18 17 16 26 26 H 1.08995 * 109.60676 * 168.21620 * 18 17 16 27 27 H 1.08993 * 109.40556 * 42.86815 * 19 11 10 28 28 H 1.09003 * 109.40317 * 283.11369 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3105 0.0000 0.0000 3 14 2.2444 1.6178 0.0000 4 1 2.3866 2.1074 -1.3947 5 1 1.4985 2.6200 0.8028 6 1 3.5907 1.4121 0.5920 7 6 2.0074 -1.2068 -0.0005 8 1 3.0826 -1.2096 0.1012 9 7 1.3304 -2.3864 -0.1296 10 7 -0.0672 -2.3938 -0.1200 11 6 -0.7417 -3.5130 -0.2445 12 6 -0.0670 -4.7292 -0.3945 13 6 1.2998 -4.7479 -0.4035 14 6 2.0113 -3.5421 -0.2660 15 8 3.2315 -3.5423 -0.2705 16 6 -0.8068 -6.0314 -0.5509 17 7 -2.1980 -5.8846 -0.1106 18 6 -2.8316 -4.7435 -0.7897 19 6 -2.2481 -3.4502 -0.2202 20 1 -0.4850 0.8400 0.0004 21 1 1.8299 -5.6822 -0.5149 22 1 -0.3176 -6.7985 0.0494 23 1 -0.7900 -6.3321 -1.5986 24 1 -2.2512 -5.7836 0.8919 25 1 -2.6291 -4.7962 -1.8595 26 1 -3.9079 -4.7683 -0.6196 27 1 -2.5851 -2.6056 -0.8210 28 1 -2.5886 -3.3210 0.8072 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063169766.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:31 Heat of formation + Delta-G solvation = 10.731840 kcal Electronic energy + Delta-G solvation = -15026.738286 eV Core-core repulsion = 12464.028539 eV Total energy + Delta-G solvation = -2562.709747 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.72436 -39.29738 -37.22219 -35.56625 -33.64359 -33.16589 -29.94690 -28.57258 -26.03988 -24.35882 -23.55546 -21.78243 -20.42978 -18.84006 -17.35937 -17.15077 -16.46968 -16.46644 -15.94212 -15.43673 -15.25130 -14.40218 -14.34620 -13.79971 -13.76247 -13.46428 -13.36399 -12.94221 -12.71622 -12.46269 -12.15277 -12.02901 -11.44859 -11.23926 -10.50572 -10.43430 -9.48653 -9.46558 -8.64472 -6.40578 -0.11511 1.03480 1.32173 1.42111 1.49633 1.87450 2.27159 2.47337 3.10298 3.37149 3.66307 3.88448 3.97601 4.24848 4.26966 4.45015 4.65410 4.82649 4.89148 4.95618 5.01729 5.06058 5.25615 5.41252 5.58813 5.73627 5.96522 6.16734 6.45679 6.60662 7.32078 7.65787 8.22339 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.038272 B = 0.010049 C = 0.008070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.422653 B = 2785.576781 C = 3468.646126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.003 3.997 3 Si 1.016 2.984 4 H -0.260 1.260 5 H -0.252 1.252 6 H -0.262 1.262 7 C -0.317 4.317 8 H 0.114 0.886 9 N -0.204 5.204 10 N -0.214 5.214 11 C 0.004 3.996 12 C -0.120 4.120 13 C -0.230 4.230 14 C 0.374 3.626 15 O -0.661 6.661 16 C 0.111 3.889 17 N -0.670 5.670 18 C 0.066 3.934 19 C -0.069 4.069 20 H 0.290 0.710 21 H 0.151 0.849 22 H 0.101 0.899 23 H 0.096 0.904 24 H 0.348 0.652 25 H 0.074 0.926 26 H 0.117 0.883 27 H 0.078 0.922 28 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.161 -3.694 -0.355 9.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.213 4.213 3 Si 0.834 3.166 4 H -0.184 1.184 5 H -0.176 1.176 6 H -0.186 1.186 7 C -0.452 4.452 8 H 0.132 0.868 9 N -0.002 5.002 10 N -0.040 5.040 11 C -0.156 4.156 12 C -0.130 4.130 13 C -0.260 4.260 14 C 0.184 3.816 15 O -0.556 6.556 16 C -0.020 4.020 17 N -0.297 5.297 18 C -0.064 4.064 19 C -0.110 4.110 20 H 0.101 0.899 21 H 0.169 0.831 22 H 0.119 0.881 23 H 0.114 0.886 24 H 0.166 0.834 25 H 0.092 0.908 26 H 0.135 0.865 27 H 0.097 0.903 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.166 -3.206 -0.688 9.735 hybrid contribution 1.558 0.743 0.368 1.765 sum -7.608 -2.463 -0.320 8.003 Atomic orbital electron populations 1.70198 1.07707 1.30244 1.31556 1.26832 0.96761 1.03397 0.94288 0.84632 0.78290 0.73998 0.79722 1.18422 1.17575 1.18619 1.20746 0.93921 0.82465 1.48082 0.86802 1.46227 1.03603 1.08180 1.42196 1.76615 0.87685 1.23920 1.15824 1.22678 0.98799 0.89294 1.04877 1.21259 0.93746 0.98282 0.99757 1.21964 0.94817 0.97214 1.12041 1.18114 0.88808 0.86153 0.88511 1.90672 1.14464 1.87041 1.63424 1.20952 0.87370 0.90731 1.02956 1.61100 1.14067 1.42251 1.12245 1.22159 1.00056 0.85319 0.98850 1.20851 0.85288 1.01735 1.03128 0.89888 0.83131 0.88090 0.88563 0.83389 0.90778 0.86525 0.90324 0.89828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -39.32 11.32 21.72 0.25 -39.07 15 2 C 0.00 0.16 5.49 85.08 0.47 0.63 15 3 Si 1.02 38.54 29.56 68.60 2.03 40.57 15 4 H -0.26 -9.47 7.11 99.48 0.71 -8.76 15 5 H -0.25 -8.65 7.11 99.48 0.71 -7.95 15 6 H -0.26 -10.01 7.11 99.48 0.71 -9.30 15 7 C -0.32 -18.45 9.63 84.22 0.81 -17.63 15 8 H 0.11 6.82 7.19 -2.91 -0.02 6.80 15 9 N -0.20 -12.00 3.61 -315.53 -1.14 -13.15 15 10 N -0.21 -11.29 8.75 -47.10 -0.41 -11.70 15 11 C 0.00 0.18 6.77 43.07 0.29 0.48 15 12 C -0.12 -4.70 5.79 -19.86 -0.11 -4.82 15 13 C -0.23 -10.78 9.61 22.50 0.22 -10.56 15 14 C 0.37 21.91 7.45 84.83 0.63 22.54 15 15 O -0.66 -42.85 16.72 -5.35 -0.09 -42.94 15 16 C 0.11 3.03 6.34 85.57 0.54 3.57 15 17 N -0.67 -15.62 6.95 -518.33 -3.60 -19.23 15 18 C 0.07 1.51 6.60 86.22 0.57 2.08 15 19 C -0.07 -2.15 6.06 29.84 0.18 -1.97 15 20 H 0.29 13.09 8.30 -92.71 -0.77 12.33 15 21 H 0.15 6.21 8.06 -2.91 -0.02 6.19 15 22 H 0.10 2.44 8.13 -2.39 -0.02 2.42 15 23 H 0.10 2.45 8.14 -2.38 -0.02 2.43 15 24 H 0.35 7.62 8.73 -89.70 -0.78 6.84 15 25 H 0.07 1.74 8.04 -2.38 -0.02 1.72 15 26 H 0.12 1.95 8.14 -2.39 -0.02 1.93 15 27 H 0.08 2.53 8.14 -2.39 -0.02 2.51 15 28 H 0.08 2.43 8.14 -2.39 -0.02 2.41 15 Total: -1.00 -72.67 243.00 1.03 -71.64 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.41 Total: 19.56 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 3.59 Total: -5.68 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -4.91 Total: -83.15 kcal Atomic # 8 Polarization: -42.85 SS G_CDS: -0.09 Total: -42.94 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Total: -72.67 1.03 -71.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063169766.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.372 kcal (2) G-P(sol) polarization free energy of solvation -72.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds