Wall clock time and date at job start Mon Mar 30 2020 02:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34231 * 117.00160 * 2 1 4 4 O 1.20819 * 119.99902 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99586 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.47129 * 60.00315 * 5 3 2 7 7 C 1.50698 * 109.47257 * 299.99707 * 5 3 2 8 8 H 1.07995 * 120.00203 * 335.28852 * 7 5 3 9 9 C 1.37880 * 119.99862 * 155.28478 * 7 5 3 10 10 N 1.31512 * 119.99807 * 175.81859 * 9 7 5 11 11 Si 1.86799 * 119.99884 * 355.82379 * 9 7 5 12 12 H 1.48502 * 109.47190 * 84.78013 * 11 9 7 13 13 H 1.48501 * 109.46712 * 204.78152 * 11 9 7 14 14 H 1.48497 * 109.47037 * 324.77722 * 11 9 7 15 15 C 1.50698 * 109.46673 * 179.97438 * 5 3 2 16 16 C 1.38674 * 120.41896 * 246.29975 * 15 5 3 17 17 C 1.38629 * 118.41862 * 179.78384 * 16 15 5 18 18 C 1.38222 * 119.16276 * 0.51274 * 17 16 15 19 19 N 1.31852 * 120.76432 * 359.72651 * 18 17 16 20 20 C 1.31883 * 121.72691 * 0.02562 * 19 18 17 21 21 H 1.08999 * 109.47220 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47425 * 300.00616 * 1 2 3 23 23 H 1.09009 * 109.46354 * 60.00087 * 1 2 3 24 24 H 0.97003 * 120.00053 * 180.02562 * 10 9 7 25 25 H 1.07997 * 120.79176 * 0.02562 * 16 15 5 26 26 H 1.08007 * 120.41732 * 180.21853 * 17 16 15 27 27 H 1.08011 * 119.61834 * 179.74731 * 18 17 16 28 28 H 1.07995 * 119.62272 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9564 0.7804 -0.8891 7 6 4.1047 0.5918 1.2314 8 1 3.4872 0.5021 2.1129 9 6 5.3856 0.0815 1.2321 10 7 5.8847 -0.4407 2.3311 11 14 6.4120 0.1321 -0.3278 12 1 7.0853 1.4513 -0.4347 13 1 7.4348 -0.9436 -0.2823 14 1 5.5317 -0.0715 -1.5063 15 6 3.9937 2.7198 -0.0002 16 6 4.6542 3.2561 -1.0952 17 6 5.0244 4.5914 -1.0535 18 6 4.7344 5.3358 0.0745 19 7 4.1092 4.7912 1.0996 20 6 3.7379 3.5257 1.0929 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8898 23 1 -0.3632 0.5139 -0.8901 24 1 6.7859 -0.7995 2.3317 25 1 4.8716 2.6491 -1.9616 26 1 5.5371 5.0432 -1.8899 27 1 5.0231 6.3758 0.1166 28 1 3.2272 3.1146 1.9511 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075579615.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:50 Heat of formation + Delta-G solvation = -52.758566 kcal Electronic energy + Delta-G solvation = -14910.984950 eV Core-core repulsion = 12313.229302 eV Total energy + Delta-G solvation = -2597.755649 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.04824 -39.08035 -35.81302 -34.09715 -32.04975 -31.21932 -28.66409 -26.91679 -23.89124 -22.90830 -22.14693 -19.76290 -17.40316 -16.89040 -16.53224 -15.87704 -15.48086 -15.25458 -14.67874 -13.82567 -13.25192 -13.00379 -12.83354 -12.68707 -12.47259 -12.27471 -11.72325 -11.42113 -11.08757 -10.75674 -10.20002 -10.15915 -9.82772 -9.46760 -9.12268 -8.90546 -8.73931 -8.20000 -6.35002 -4.40908 1.81639 1.92963 3.02798 3.14143 3.16857 3.22015 3.54004 4.17367 4.54765 4.90710 5.11691 5.34664 5.49598 5.54531 5.55208 5.66852 5.74596 5.81482 5.94929 6.10958 6.34164 6.52333 6.69214 6.97829 7.06124 7.14814 7.43336 8.11657 8.52702 8.65605 8.68121 9.20232 10.75914 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.017854 B = 0.016437 C = 0.010350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.910834 B = 1703.021464 C = 2704.722532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.345 6.345 3 C 0.483 3.517 4 O -0.531 6.531 5 C 0.053 3.947 6 H 0.083 0.917 7 C -0.514 4.514 8 H 0.087 0.913 9 C 0.089 3.911 10 N -0.877 5.877 11 Si 0.864 3.136 12 H -0.266 1.266 13 H -0.281 1.281 14 H -0.260 1.260 15 C -0.089 4.089 16 C -0.093 4.093 17 C -0.180 4.180 18 C 0.074 3.926 19 N -0.492 5.492 20 C 0.143 3.857 21 H 0.093 0.907 22 H 0.057 0.943 23 H 0.053 0.947 24 H 0.271 0.729 25 H 0.123 0.877 26 H 0.124 0.876 27 H 0.145 0.855 28 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.583 3.386 -7.278 8.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.261 6.261 3 C 0.328 3.672 4 O -0.421 6.421 5 C 0.033 3.967 6 H 0.101 0.899 7 C -0.551 4.551 8 H 0.105 0.895 9 C -0.117 4.117 10 N -0.512 5.512 11 Si 0.690 3.310 12 H -0.191 1.191 13 H -0.206 1.206 14 H -0.185 1.185 15 C -0.091 4.091 16 C -0.119 4.119 17 C -0.200 4.200 18 C -0.083 4.083 19 N -0.201 5.201 20 C -0.014 4.014 21 H 0.112 0.888 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.140 0.860 26 H 0.142 0.858 27 H 0.162 0.838 28 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.811 4.084 -6.434 8.521 hybrid contribution 0.719 -0.550 -1.504 1.755 sum -3.092 3.534 -7.938 9.223 Atomic orbital electron populations 1.23132 0.78433 1.02781 1.01737 1.86626 1.21509 1.33928 1.83996 1.24230 0.92378 0.80445 0.70110 1.90573 1.67697 1.36562 1.47237 1.18117 0.85280 0.90929 1.02385 0.89938 1.20428 1.00190 1.37333 0.97118 0.89537 1.24914 0.96987 0.93626 0.96156 1.69840 1.16574 1.38008 1.26758 0.87007 0.80805 0.78984 0.84208 1.19111 1.20630 1.18540 1.21095 0.97263 0.96781 0.93990 1.21415 0.97647 0.95083 0.97718 1.21901 1.03077 0.95042 0.99969 1.22514 0.96413 0.99648 0.89681 1.67652 1.11031 1.13331 1.28098 1.22454 0.94076 0.87907 0.96988 0.88823 0.92411 0.92789 0.91892 0.85953 0.85758 0.83780 0.83045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 101.05 1.07 1.57 15 2 O -0.34 -6.98 10.48 -39.26 -0.41 -7.39 15 3 C 0.48 10.66 7.14 36.01 0.26 10.91 15 4 O -0.53 -12.14 15.20 -18.74 -0.28 -12.42 15 5 C 0.05 1.22 2.00 -94.08 -0.19 1.03 15 6 H 0.08 1.83 5.30 -51.93 -0.28 1.55 15 7 C -0.51 -13.46 8.16 -34.44 -0.28 -13.74 15 8 H 0.09 2.47 8.05 -52.49 -0.42 2.04 15 9 C 0.09 2.39 5.47 -17.82 -0.10 2.29 15 10 N -0.88 -25.07 13.96 55.43 0.77 -24.30 15 11 Si 0.86 19.80 26.45 -169.99 -4.50 15.31 15 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 13 H -0.28 -6.41 7.11 56.52 0.40 -6.00 15 14 H -0.26 -5.54 6.26 56.52 0.35 -5.19 15 15 C -0.09 -1.95 3.80 -104.48 -0.40 -2.35 15 16 C -0.09 -1.79 9.16 -39.28 -0.36 -2.15 15 17 C -0.18 -3.06 10.11 -39.44 -0.40 -3.46 15 18 C 0.07 1.31 11.18 -17.55 -0.20 1.12 15 19 N -0.49 -10.36 10.36 -13.25 -0.14 -10.49 15 20 C 0.14 3.21 9.53 -17.55 -0.17 3.04 15 21 H 0.09 1.09 8.14 -51.93 -0.42 0.67 15 22 H 0.06 0.86 8.13 -51.93 -0.42 0.44 15 23 H 0.05 0.75 8.13 -51.92 -0.42 0.33 15 24 H 0.27 7.25 8.31 -40.82 -0.34 6.91 15 25 H 0.12 2.10 8.01 -52.49 -0.42 1.68 15 26 H 0.12 1.64 8.06 -52.48 -0.42 1.22 15 27 H 0.14 2.01 8.06 -52.48 -0.42 1.59 15 28 H 0.15 3.47 7.88 -52.49 -0.41 3.06 15 LS Contribution 252.12 15.07 3.80 3.80 Total: -1.00 -30.26 252.12 -4.35 -34.60 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -2.83 Total: 2.64 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -0.76 Total: -1.75 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.64 Total: -34.79 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.70 Total: -19.82 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.50 Total: 15.31 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.26 -4.35 -34.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075579615.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.155 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds