Wall clock time and date at job start Mon Mar 30 2020 02:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34231 * 117.00160 * 2 1 4 4 O 1.20819 * 119.99902 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99586 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.47129 * 60.00315 * 5 3 2 7 7 C 1.50698 * 109.47257 * 299.99707 * 5 3 2 8 8 H 1.07995 * 120.00203 * 335.28852 * 7 5 3 9 9 C 1.37880 * 119.99862 * 155.28478 * 7 5 3 10 10 N 1.31512 * 119.99807 * 175.81859 * 9 7 5 11 11 Si 1.86799 * 119.99884 * 355.82379 * 9 7 5 12 12 H 1.48502 * 109.47190 * 84.78013 * 11 9 7 13 13 H 1.48501 * 109.46712 * 204.78152 * 11 9 7 14 14 H 1.48497 * 109.47037 * 324.77722 * 11 9 7 15 15 C 1.50698 * 109.46673 * 179.97438 * 5 3 2 16 16 C 1.38674 * 120.41896 * 246.29975 * 15 5 3 17 17 C 1.38629 * 118.41862 * 179.78384 * 16 15 5 18 18 C 1.38222 * 119.16276 * 0.51274 * 17 16 15 19 19 N 1.31852 * 120.76432 * 359.72651 * 18 17 16 20 20 C 1.31883 * 121.72691 * 0.02562 * 19 18 17 21 21 H 1.08999 * 109.47220 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47425 * 300.00616 * 1 2 3 23 23 H 1.09009 * 109.46354 * 60.00087 * 1 2 3 24 24 H 0.97003 * 120.00053 * 180.02562 * 10 9 7 25 25 H 1.07997 * 120.79176 * 0.02562 * 16 15 5 26 26 H 1.08007 * 120.41732 * 180.21853 * 17 16 15 27 27 H 1.08011 * 119.61834 * 179.74731 * 18 17 16 28 28 H 1.07995 * 119.62272 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9564 0.7804 -0.8891 7 6 4.1047 0.5918 1.2314 8 1 3.4872 0.5021 2.1129 9 6 5.3856 0.0815 1.2321 10 7 5.8847 -0.4407 2.3311 11 14 6.4120 0.1321 -0.3278 12 1 7.0853 1.4513 -0.4347 13 1 7.4348 -0.9436 -0.2823 14 1 5.5317 -0.0715 -1.5063 15 6 3.9937 2.7198 -0.0002 16 6 4.6542 3.2561 -1.0952 17 6 5.0244 4.5914 -1.0535 18 6 4.7344 5.3358 0.0745 19 7 4.1092 4.7912 1.0996 20 6 3.7379 3.5257 1.0929 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8898 23 1 -0.3632 0.5139 -0.8901 24 1 6.7859 -0.7995 2.3317 25 1 4.8716 2.6491 -1.9616 26 1 5.5371 5.0432 -1.8899 27 1 5.0231 6.3758 0.1166 28 1 3.2272 3.1146 1.9511 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075579615.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:49 Heat of formation + Delta-G solvation = -72.864014 kcal Electronic energy + Delta-G solvation = -14911.856788 eV Core-core repulsion = 12313.229302 eV Total energy + Delta-G solvation = -2598.627486 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.67710 -40.62712 -37.43902 -35.92000 -33.86765 -32.76717 -30.27034 -28.34637 -25.76258 -24.43660 -23.67583 -21.42233 -19.34025 -18.58249 -18.00879 -17.50570 -17.12947 -16.78370 -16.35770 -15.39233 -14.85684 -14.68730 -14.42883 -14.24970 -13.98885 -13.84757 -13.33317 -12.96311 -12.79092 -12.39704 -11.90230 -11.74660 -11.67969 -11.27893 -10.89393 -10.59351 -10.31086 -9.75433 -8.38665 -6.49958 0.31960 0.43621 1.28201 1.34503 1.37941 1.43857 2.03190 2.28299 2.90483 3.06439 3.65602 3.98489 4.04285 4.17469 4.23201 4.28667 4.34841 4.35717 4.57908 4.68641 4.82502 4.95689 5.19139 5.24710 5.44717 5.46977 5.90741 6.07584 6.51088 6.90434 7.13750 7.15339 8.76066 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.017854 B = 0.016437 C = 0.010350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.910834 B = 1703.021464 C = 2704.722532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.360 6.360 3 C 0.483 3.517 4 O -0.544 6.544 5 C 0.055 3.945 6 H 0.096 0.904 7 C -0.513 4.513 8 H 0.041 0.959 9 C 0.034 3.966 10 N -0.929 5.929 11 Si 0.922 3.078 12 H -0.257 1.257 13 H -0.281 1.281 14 H -0.229 1.229 15 C -0.112 4.112 16 C -0.100 4.100 17 C -0.164 4.164 18 C 0.072 3.928 19 N -0.515 5.515 20 C 0.115 3.885 21 H 0.131 0.869 22 H 0.053 0.947 23 H 0.067 0.933 24 H 0.272 0.728 25 H 0.150 0.850 26 H 0.176 0.824 27 H 0.187 0.813 28 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.854 4.577 -10.388 11.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.275 6.275 3 C 0.329 3.671 4 O -0.435 6.435 5 C 0.035 3.965 6 H 0.113 0.887 7 C -0.550 4.550 8 H 0.059 0.941 9 C -0.167 4.167 10 N -0.566 5.566 11 Si 0.744 3.256 12 H -0.181 1.181 13 H -0.206 1.206 14 H -0.152 1.152 15 C -0.114 4.114 16 C -0.126 4.126 17 C -0.183 4.183 18 C -0.084 4.084 19 N -0.224 5.224 20 C -0.041 4.041 21 H 0.149 0.851 22 H 0.072 0.928 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.167 0.833 26 H 0.193 0.807 27 H 0.204 0.796 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.124 5.264 -9.548 11.342 hybrid contribution 0.381 -0.835 -0.493 1.041 sum -2.743 4.429 -10.041 11.312 Atomic orbital electron populations 1.23533 0.75505 1.05476 1.02249 1.86582 1.24476 1.32986 1.83505 1.24079 0.92324 0.80796 0.69945 1.90549 1.67944 1.37066 1.47939 1.18045 0.85879 0.91698 1.00868 0.88652 1.20419 0.99873 1.37567 0.97126 0.94112 1.25778 0.98212 0.93110 0.99598 1.69988 1.17238 1.40014 1.29402 0.86073 0.79344 0.79244 0.80915 1.18142 1.20640 1.15199 1.20979 0.99057 0.96120 0.95278 1.21838 0.96581 0.96657 0.97479 1.22439 1.01198 0.93840 1.00818 1.23322 0.94609 1.01556 0.88957 1.67616 1.12085 1.12620 1.30073 1.22153 0.95923 0.89138 0.96936 0.85119 0.92771 0.91432 0.91830 0.83256 0.80687 0.79582 0.85961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.56 113.37 1.20 1.94 15 2 O -0.36 -14.54 10.48 -51.42 -0.54 -15.08 15 3 C 0.48 21.50 7.14 71.24 0.51 22.01 15 4 O -0.54 -25.11 15.20 21.99 0.33 -24.78 15 5 C 0.06 2.52 2.00 -13.03 -0.03 2.50 15 6 H 0.10 4.04 5.30 -2.39 -0.01 4.03 15 7 C -0.51 -27.90 8.16 25.60 0.21 -27.69 15 8 H 0.04 2.51 8.05 -2.91 -0.02 2.48 15 9 C 0.03 1.85 5.47 84.66 0.46 2.31 15 10 N -0.93 -55.14 13.96 21.45 0.30 -54.84 15 11 Si 0.92 39.75 26.45 68.60 1.81 41.57 15 12 H -0.26 -10.66 7.11 99.48 0.71 -9.96 15 13 H -0.28 -12.02 7.11 99.48 0.71 -11.31 15 14 H -0.23 -8.62 6.26 99.48 0.62 -7.99 15 15 C -0.11 -4.84 3.80 -19.77 -0.08 -4.92 15 16 C -0.10 -3.49 9.16 22.47 0.21 -3.29 15 17 C -0.16 -4.76 10.11 22.36 0.23 -4.53 15 18 C 0.07 2.31 11.18 84.69 0.95 3.26 15 19 N -0.51 -21.27 10.36 -195.84 -2.03 -23.30 15 20 C 0.11 5.26 9.53 84.67 0.81 6.07 15 21 H 0.13 2.77 8.14 -2.39 -0.02 2.75 15 22 H 0.05 1.60 8.13 -2.39 -0.02 1.58 15 23 H 0.07 1.78 8.13 -2.38 -0.02 1.76 15 24 H 0.27 15.07 8.31 -92.71 -0.77 14.30 15 25 H 0.15 4.36 8.01 -2.91 -0.02 4.33 15 26 H 0.18 3.33 8.06 -2.91 -0.02 3.30 15 27 H 0.19 4.25 8.06 -2.90 -0.02 4.23 15 28 H 0.12 6.09 7.88 -2.91 -0.02 6.07 15 Total: -1.00 -68.64 252.12 5.42 -63.22 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 1.08 Total: 15.56 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 4.46 Total: -2.35 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -1.73 Total: -78.14 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -0.20 Total: -39.86 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 1.81 Total: 41.57 kcal Total: -68.64 5.42 -63.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075579615.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.643 kcal (2) G-P(sol) polarization free energy of solvation -68.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds