Wall clock time and date at job start Mon Mar 30 2020 03:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31597 * 1 3 3 Si 1.86797 * 120.00103 * 2 1 4 4 H 1.48497 * 109.47356 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47200 * 300.00165 * 3 2 1 6 6 H 1.48503 * 109.47271 * 59.99894 * 3 2 1 7 7 C 1.38773 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99934 * 164.62627 * 7 2 1 9 9 N 1.36871 * 120.00034 * 344.90743 * 7 2 1 10 10 C 1.47223 * 121.06831 * 335.60016 * 9 7 2 11 11 C 1.53534 * 107.67390 * 222.34465 * 10 9 7 12 12 O 1.43016 * 108.66966 * 301.90710 * 11 10 9 13 13 C 1.35864 * 117.65320 * 48.85755 * 12 11 10 14 14 C 1.38957 * 119.77156 * 160.27227 * 13 12 11 15 15 C 1.38550 * 118.53356 * 179.86563 * 14 13 12 16 16 C 1.39041 * 119.32603 * 359.97438 * 15 14 13 17 17 N 1.39212 * 119.59777 * 180.02562 * 16 15 14 18 18 N 1.32361 * 120.79302 * 0.05819 * 16 15 14 19 19 C 1.32488 * 121.58875 * 359.75832 * 18 16 15 20 20 H 0.97001 * 120.00204 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.81841 * 341.88515 * 10 9 7 22 22 H 1.09006 * 109.82128 * 102.79990 * 10 9 7 23 23 H 1.09003 * 109.60401 * 61.65620 * 11 10 9 24 24 H 1.08994 * 109.60791 * 181.98614 * 11 10 9 25 25 H 1.07995 * 120.73136 * 359.89197 * 14 13 12 26 26 H 1.08002 * 120.33156 * 179.97438 * 15 14 13 27 27 H 0.96998 * 120.00781 * 359.97438 * 17 16 15 28 28 H 0.97003 * 119.99567 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 3.7100 1.3464 -0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0098 -1.2018 0.0005 8 1 3.0608 -1.2187 -0.2474 9 7 1.3608 -2.3666 0.3097 10 6 0.1407 -2.3609 1.1335 11 6 0.2445 -3.5256 2.1284 12 8 0.3984 -4.7430 1.3937 13 6 1.3389 -4.7734 0.4137 14 6 1.8195 -5.9944 -0.0436 15 6 2.7763 -5.9956 -1.0457 16 6 3.2241 -4.7845 -1.5612 17 7 4.1850 -4.7791 -2.5686 18 7 2.7483 -3.6366 -1.1052 19 6 1.8305 -3.5960 -0.1506 20 1 -0.4850 0.8400 0.0004 21 1 0.0648 -1.4180 1.6751 22 1 -0.7349 -2.4945 0.4981 23 1 1.1089 -3.3776 2.7759 24 1 -0.6613 -3.5724 2.7327 25 1 1.4550 -6.9219 0.3725 26 1 3.1703 -6.9280 -1.4226 27 1 4.5382 -5.6169 -2.9065 28 1 4.5012 -3.9374 -2.9327 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077018130.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:35 Heat of formation + Delta-G solvation = 1.351408 kcal Electronic energy + Delta-G solvation = -15062.822106 eV Core-core repulsion = 12499.705593 eV Total energy + Delta-G solvation = -2563.116513 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.52145 -39.12362 -37.35191 -34.86205 -33.80797 -32.17599 -30.80915 -28.65454 -26.01335 -25.08816 -23.47936 -21.61897 -19.70248 -18.74756 -18.01667 -17.92983 -16.73994 -16.52662 -16.25119 -15.50389 -15.21069 -14.89447 -14.70024 -14.33851 -13.79705 -13.57085 -13.35002 -12.89082 -12.45830 -12.39577 -12.12490 -11.95914 -11.36692 -10.75459 -10.38722 -9.96776 -9.35241 -8.34864 -7.98845 -5.75638 0.75993 0.89320 1.40325 1.43554 1.54499 2.21122 2.62629 2.67076 2.91796 3.23332 3.41183 3.96002 4.16187 4.26426 4.36294 4.46476 4.72627 4.80996 4.96754 5.16864 5.28406 5.40145 5.44030 5.75708 5.96631 6.46750 6.61312 6.77378 6.88429 7.29443 7.60652 7.94137 8.71862 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.028872 B = 0.011450 C = 0.008534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.575977 B = 2444.920506 C = 3280.039882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.020 4.020 3 Si 0.995 3.005 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.298 4.298 8 H 0.080 0.920 9 N -0.460 5.460 10 C 0.123 3.877 11 C 0.046 3.954 12 O -0.327 6.327 13 C -0.102 4.102 14 C -0.026 4.026 15 C -0.303 4.303 16 C 0.406 3.594 17 N -0.845 5.845 18 N -0.610 5.610 19 C 0.337 3.663 20 H 0.271 0.729 21 H 0.093 0.907 22 H 0.040 0.960 23 H 0.054 0.946 24 H 0.143 0.857 25 H 0.155 0.845 26 H 0.157 0.843 27 H 0.418 0.582 28 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.653 -7.440 0.823 8.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.220 4.220 3 Si 0.819 3.181 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.098 0.902 9 N -0.157 5.157 10 C -0.001 4.001 11 C -0.030 4.030 12 O -0.241 6.241 13 C -0.154 4.154 14 C -0.051 4.051 15 C -0.331 4.331 16 C 0.166 3.834 17 N -0.392 5.392 18 N -0.341 5.341 19 C 0.097 3.903 20 H 0.080 0.920 21 H 0.112 0.888 22 H 0.058 0.942 23 H 0.073 0.927 24 H 0.160 0.840 25 H 0.173 0.827 26 H 0.174 0.826 27 H 0.251 0.749 28 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 3.512 -6.444 0.715 7.373 hybrid contribution 0.179 0.615 -0.184 0.666 sum 3.691 -5.829 0.531 6.920 Atomic orbital electron populations 1.70150 1.06936 1.28345 1.49489 1.26177 0.96428 1.02588 0.96825 0.84831 0.78252 0.77011 0.77990 1.19280 1.20630 1.19429 1.19666 0.93857 0.83668 1.45514 0.90179 1.42915 1.25170 1.02165 1.45485 1.22021 0.86037 0.99460 0.92564 1.23451 1.03597 0.83129 0.92871 1.85826 1.54492 1.36843 1.46928 1.19086 1.03331 0.93750 0.99251 1.20656 0.93793 0.95149 0.95525 1.20895 1.07893 0.97332 1.06977 1.18361 0.88249 0.88553 0.88284 1.41997 1.44617 1.11799 1.40764 1.66438 1.20168 1.29625 1.17852 1.18700 0.93940 0.86666 0.90948 0.91965 0.88845 0.94187 0.92732 0.83988 0.82700 0.82567 0.74927 0.77286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.25 11.08 21.64 0.24 -50.01 15 2 C -0.02 -1.10 5.01 84.86 0.43 -0.67 15 3 Si 1.00 42.81 29.58 68.60 2.03 44.84 15 4 H -0.27 -11.39 7.11 99.48 0.71 -10.69 15 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 15 6 H -0.27 -10.97 7.11 99.48 0.71 -10.26 15 7 C -0.30 -16.99 9.28 84.03 0.78 -16.21 15 8 H 0.08 4.71 7.67 -2.91 -0.02 4.69 15 9 N -0.46 -25.15 3.01 -514.42 -1.55 -26.71 15 10 C 0.12 5.96 5.16 86.42 0.45 6.41 15 11 C 0.05 1.79 7.21 72.16 0.52 2.31 15 12 O -0.33 -13.98 10.34 -92.02 -0.95 -14.93 15 13 C -0.10 -4.64 6.53 22.75 0.15 -4.49 15 14 C -0.03 -0.96 10.09 22.52 0.23 -0.73 15 15 C -0.30 -10.44 9.93 22.54 0.22 -10.22 15 16 C 0.41 16.06 7.74 132.98 1.03 17.09 15 17 N -0.84 -24.54 9.08 -55.38 -0.50 -25.05 15 18 N -0.61 -30.37 9.56 -189.78 -1.81 -32.19 15 19 C 0.34 17.51 7.19 132.98 0.96 18.47 15 20 H 0.27 13.98 8.31 -92.71 -0.77 13.21 15 21 H 0.09 4.64 6.49 -2.39 -0.02 4.63 15 22 H 0.04 2.07 8.14 -2.38 -0.02 2.05 15 23 H 0.05 2.10 8.14 -2.39 -0.02 2.08 15 24 H 0.14 4.26 8.14 -2.39 -0.02 4.24 15 25 H 0.16 4.64 8.06 -2.91 -0.02 4.62 15 26 H 0.16 3.98 8.06 -2.91 -0.02 3.96 15 27 H 0.42 8.55 8.82 -92.71 -0.82 7.73 15 28 H 0.40 11.49 8.95 -92.71 -0.83 10.66 15 Total: -1.00 -68.13 242.89 1.76 -66.36 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -0.44 Total: 25.72 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 4.76 Total: 11.96 kcal Atomic # 7 Polarization: -130.32 SS G_CDS: -3.63 Total: -133.95 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.95 Total: -14.93 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -68.13 1.76 -66.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077018130.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.713 kcal (2) G-P(sol) polarization free energy of solvation -68.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds