Wall clock time and date at job start Mon Mar 30 2020 02:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86810 * 119.99698 * 2 1 4 4 H 1.48503 * 109.46975 * 269.99855 * 3 2 1 5 5 H 1.48500 * 109.47344 * 29.99942 * 3 2 1 6 6 H 1.48492 * 109.47177 * 150.00305 * 3 2 1 7 7 C 1.37873 * 120.00368 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99667 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99704 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.26666 * 59.51116 * 9 7 2 11 11 N 1.46630 * 109.27016 * 299.99689 * 9 7 2 12 12 C 1.47156 * 110.24670 * 187.25707 * 11 9 7 13 13 C 1.52900 * 108.50057 * 71.27962 * 12 11 9 14 14 C 1.50723 * 109.95829 * 309.58321 * 13 12 11 15 15 C 1.38698 * 118.45583 * 196.75845 * 14 13 12 16 16 C 1.37992 * 120.38412 * 180.19870 * 15 14 13 17 17 C 1.38487 * 119.79912 * 0.31979 * 16 15 14 18 18 F 1.35096 * 120.09093 * 179.67774 * 17 16 15 19 19 C 1.38242 * 119.81419 * 359.42275 * 17 16 15 20 20 C 1.37854 * 121.64956 * 16.91367 * 14 13 12 21 21 H 0.97001 * 120.00003 * 359.97438 * 1 2 3 22 22 H 1.00904 * 110.99908 * 310.67722 * 11 9 7 23 23 H 1.09002 * 109.63293 * 311.57595 * 12 11 9 24 24 H 1.09005 * 109.79579 * 191.07803 * 12 11 9 25 25 H 1.09003 * 109.38299 * 189.43600 * 13 12 11 26 26 H 1.08996 * 109.38774 * 69.73960 * 13 12 11 27 27 H 1.07995 * 119.80726 * 0.16707 * 15 14 13 28 28 H 1.08002 * 120.09613 * 180.02562 * 16 15 14 29 29 H 1.07994 * 119.81808 * 180.21692 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4404 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1938 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6195 -2.5498 -0.8863 11 7 0.4094 -2.5719 1.1990 12 6 -0.2028 -3.9054 1.3111 13 6 0.8873 -4.9096 1.6869 14 6 2.0642 -4.7635 0.7567 15 6 2.9921 -5.7928 0.6982 16 6 4.0868 -5.6989 -0.1366 17 6 4.2634 -4.5676 -0.9155 18 9 5.3364 -4.4667 -1.7300 19 6 3.3357 -3.5440 -0.8612 20 6 2.2344 -3.6399 -0.0236 21 1 -0.4850 0.8401 0.0004 22 1 0.9395 -2.3465 2.0274 23 1 -0.6460 -4.1865 0.3557 24 1 -0.9725 -3.8946 2.0828 25 1 0.4890 -5.9214 1.6105 26 1 1.2107 -4.7260 2.7115 27 1 2.8573 -6.6725 1.3099 28 1 4.8062 -6.5033 -0.1788 29 1 3.4715 -2.6633 -1.4712 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083664399.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:20 Heat of formation + Delta-G solvation = -41.733055 kcal Electronic energy + Delta-G solvation = -14817.741021 eV Core-core repulsion = 12232.836263 eV Total energy + Delta-G solvation = -2584.904757 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.83987 -40.84285 -37.18956 -34.94340 -33.04849 -31.28704 -29.83627 -27.25112 -24.62192 -23.92025 -22.85279 -20.93189 -18.63407 -18.17458 -17.20339 -16.83400 -16.53913 -16.41795 -15.36542 -15.18078 -14.92484 -14.51623 -14.36408 -14.05604 -13.82016 -13.10072 -12.86788 -12.76388 -12.61815 -12.23928 -12.11187 -11.86741 -11.66925 -11.04876 -10.58825 -9.71688 -9.30668 -8.70901 -8.01787 -6.22987 0.26509 0.40829 1.42256 1.44297 1.53143 2.44023 2.71389 3.20050 3.37083 3.84400 3.93358 4.00607 4.11323 4.27410 4.40538 4.48904 4.71759 4.78638 5.02926 5.09840 5.14481 5.25238 5.31650 5.38519 5.42459 5.67637 5.74152 6.05024 6.19892 6.60461 7.03734 7.07450 7.49074 9.01552 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.025849 B = 0.011259 C = 0.008198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.957332 B = 2486.358935 C = 3414.472154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.038 3.962 3 Si 0.946 3.054 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.549 4.549 8 H 0.051 0.949 9 C 0.255 3.745 10 H 0.013 0.987 11 N -0.662 5.662 12 C 0.048 3.952 13 C -0.104 4.104 14 C -0.110 4.110 15 C -0.087 4.087 16 C -0.161 4.161 17 C 0.069 3.931 18 F -0.152 7.152 19 C -0.156 4.156 20 C -0.074 4.074 21 H 0.258 0.742 22 H 0.326 0.674 23 H 0.050 0.950 24 H 0.083 0.917 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.166 0.834 28 H 0.160 0.840 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.975 -11.184 3.159 12.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.166 4.166 3 Si 0.772 3.228 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.588 4.588 8 H 0.069 0.931 9 C 0.147 3.853 10 H 0.030 0.970 11 N -0.289 5.289 12 C -0.082 4.082 13 C -0.143 4.143 14 C -0.110 4.110 15 C -0.105 4.105 16 C -0.179 4.179 17 C 0.050 3.950 18 F -0.131 7.131 19 C -0.176 4.176 20 C -0.077 4.077 21 H 0.067 0.933 22 H 0.143 0.857 23 H 0.068 0.932 24 H 0.102 0.898 25 H 0.119 0.881 26 H 0.103 0.897 27 H 0.183 0.817 28 H 0.178 0.822 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.252 -10.757 2.828 11.588 hybrid contribution 1.332 0.830 -0.309 1.599 sum 4.583 -9.928 2.519 11.221 Atomic orbital electron populations 1.70221 1.06906 1.26605 1.47489 1.25648 0.95412 1.01692 0.93871 0.85765 0.78791 0.80167 0.78041 1.20432 1.20733 1.19731 1.21260 0.92260 0.90908 1.54342 0.93074 1.17832 0.87558 0.89701 0.90245 0.96951 1.61078 1.37344 1.25529 1.04912 1.22153 0.96632 0.88464 1.00909 1.21186 0.93387 1.02002 0.97722 1.20069 0.98564 0.93635 0.98744 1.21256 0.92342 0.98943 0.97922 1.21269 1.00991 0.97301 0.98338 1.17903 0.85726 0.97113 0.94290 1.91423 1.53696 1.96630 1.71319 1.21196 0.95411 0.98701 1.02286 1.20975 0.95918 0.96647 0.94130 0.93323 0.85745 0.93181 0.89838 0.88053 0.89718 0.81651 0.82238 0.86562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.59 12.76 21.45 0.27 -50.32 15 2 C 0.04 2.09 5.39 84.65 0.46 2.55 15 3 Si 0.95 43.57 29.54 68.60 2.03 45.60 15 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 15 6 H -0.27 -12.34 7.11 99.48 0.71 -11.64 15 7 C -0.55 -29.99 7.81 25.60 0.20 -29.79 15 8 H 0.05 2.81 6.74 -2.91 -0.02 2.79 15 9 C 0.26 12.80 2.38 43.45 0.10 12.91 15 10 H 0.01 0.74 8.14 -2.39 -0.02 0.72 15 11 N -0.66 -30.43 5.94 -499.66 -2.97 -33.40 15 12 C 0.05 1.71 6.62 86.22 0.57 2.28 15 13 C -0.10 -2.98 5.82 29.82 0.17 -2.81 15 14 C -0.11 -3.73 5.77 -19.84 -0.11 -3.85 15 15 C -0.09 -2.37 9.65 22.32 0.22 -2.16 15 16 C -0.16 -4.61 10.03 22.27 0.22 -4.39 15 17 C 0.07 2.48 7.30 22.33 0.16 2.64 15 18 F -0.15 -5.41 17.27 44.97 0.78 -4.64 15 19 C -0.16 -6.61 8.71 22.38 0.19 -6.41 15 20 C -0.07 -3.18 5.46 -19.87 -0.11 -3.29 15 21 H 0.26 14.19 8.31 -92.71 -0.77 13.42 15 22 H 0.33 14.86 8.55 -89.69 -0.77 14.10 15 23 H 0.05 1.88 8.05 -2.39 -0.02 1.86 15 24 H 0.08 2.61 8.14 -2.38 -0.02 2.59 15 25 H 0.10 2.23 8.14 -2.39 -0.02 2.21 15 26 H 0.08 2.21 8.14 -2.39 -0.02 2.19 15 27 H 0.17 3.08 8.06 -2.91 -0.02 3.05 15 28 H 0.16 3.43 8.06 -2.91 -0.02 3.41 15 29 H 0.12 5.31 7.10 -2.91 -0.02 5.29 15 Total: -1.00 -61.60 249.20 2.59 -59.01 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.40 Total: 16.06 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: 2.08 Total: -32.31 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -2.69 Total: -83.72 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 0.78 Total: -4.64 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -61.60 2.59 -59.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083664399.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.282 kcal (2) G-P(sol) polarization free energy of solvation -61.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds