Wall clock time and date at job start Mon Mar 30 2020 02:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99978 * 2 1 4 4 H 1.48504 * 109.47168 * 269.99743 * 3 2 1 5 5 H 1.48500 * 109.47167 * 29.99612 * 3 2 1 6 6 H 1.48501 * 109.47037 * 149.99706 * 3 2 1 7 7 C 1.37873 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99749 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00152 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.30051 * 299.57847 * 9 7 2 11 11 N 1.46634 * 109.30016 * 58.95832 * 9 7 2 12 12 C 1.47164 * 110.23906 * 172.87963 * 11 9 7 13 13 C 1.52898 * 108.50646 * 288.72246 * 12 11 9 14 14 C 1.50726 * 109.96392 * 50.38948 * 13 12 11 15 15 C 1.38696 * 118.45940 * 163.13590 * 14 13 12 16 16 C 1.37996 * 120.38056 * 179.83637 * 15 14 13 17 17 C 1.38483 * 119.80438 * 359.97438 * 16 15 14 18 18 F 1.35104 * 120.09326 * 180.02562 * 17 16 15 19 19 C 1.38232 * 119.81137 * 0.06760 * 17 16 15 20 20 C 1.37844 * 121.65150 * 343.08876 * 14 13 12 21 21 H 0.96997 * 119.99880 * 0.02562 * 1 2 3 22 22 H 1.00898 * 111.00205 * 49.45316 * 11 9 7 23 23 H 1.09001 * 109.62697 * 169.02526 * 12 11 9 24 24 H 1.08991 * 109.63986 * 48.43117 * 12 11 9 25 25 H 1.08995 * 109.38603 * 290.23549 * 13 12 11 26 26 H 1.09000 * 109.38733 * 170.54057 * 13 12 11 27 27 H 1.08002 * 119.81060 * 359.86558 * 15 14 13 28 28 H 1.08002 * 120.09484 * 179.97438 * 16 15 14 29 29 H 1.08004 * 119.81940 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6308 -2.5570 0.8950 11 7 0.3911 -2.5623 -1.1855 12 6 -0.2248 -3.8941 -1.2974 13 6 0.8577 -4.8975 -1.6965 14 6 2.0491 -4.7593 -0.7837 15 6 2.9749 -5.7913 -0.7445 16 6 4.0822 -5.7048 0.0744 17 6 4.2703 -4.5808 0.8613 18 9 5.3526 -4.4898 1.6648 19 6 3.3471 -3.5527 0.8228 20 6 2.2333 -3.6411 0.0010 21 1 -0.4850 0.8400 -0.0004 22 1 0.9090 -2.3319 -2.0203 23 1 -1.0043 -3.8742 -2.0591 24 1 -0.6541 -4.1810 -0.3375 25 1 1.1655 -4.7078 -2.7247 26 1 0.4590 -5.9091 -1.6205 27 1 2.8287 -6.6674 -1.3589 28 1 4.8000 -6.5113 0.1016 29 1 3.4939 -2.6759 1.4361 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083664400.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:24 Heat of formation + Delta-G solvation = -24.763756 kcal Electronic energy + Delta-G solvation = -14818.144991 eV Core-core repulsion = 12233.976077 eV Total energy + Delta-G solvation = -2584.168913 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.39478 -39.35622 -35.62920 -33.15513 -31.33123 -29.79926 -28.27855 -25.41138 -23.01247 -22.45281 -21.25216 -19.42132 -16.76522 -16.65386 -15.68412 -15.30825 -15.08297 -14.56317 -13.89496 -13.59130 -13.33715 -13.12529 -12.86050 -12.40861 -12.09019 -11.64210 -11.20373 -10.99005 -10.88762 -10.75422 -10.50052 -10.27042 -9.89052 -9.19330 -8.54736 -8.22015 -7.84767 -7.03149 -5.96907 -4.12953 1.69768 1.83226 3.30317 3.37702 3.40782 4.13331 4.42890 4.77522 5.14807 5.19566 5.33233 5.48029 5.55770 5.70387 5.82158 5.92532 6.04919 6.16076 6.38922 6.50639 6.56708 6.67747 6.75931 6.88400 7.13856 7.32133 7.51094 7.82401 8.07417 8.45667 8.81238 8.99783 9.56235 11.06760 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.025895 B = 0.011248 C = 0.008194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.023240 B = 2488.716619 C = 3416.129650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.084 3.916 3 Si 0.886 3.114 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.541 4.541 8 H 0.060 0.940 9 C 0.248 3.752 10 H 0.058 0.942 11 N -0.640 5.640 12 C 0.050 3.950 13 C -0.114 4.114 14 C -0.106 4.106 15 C -0.100 4.100 16 C -0.176 4.176 17 C 0.079 3.921 18 F -0.151 7.151 19 C -0.134 4.134 20 C -0.045 4.045 21 H 0.258 0.742 22 H 0.328 0.672 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.048 -8.952 -1.804 9.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.124 4.124 3 Si 0.713 3.287 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.579 4.579 8 H 0.078 0.922 9 C 0.140 3.860 10 H 0.075 0.925 11 N -0.267 5.267 12 C -0.081 4.081 13 C -0.153 4.153 14 C -0.106 4.106 15 C -0.118 4.118 16 C -0.195 4.195 17 C 0.060 3.940 18 F -0.130 7.130 19 C -0.154 4.154 20 C -0.047 4.047 21 H 0.068 0.932 22 H 0.145 0.855 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.137 0.863 28 H 0.140 0.860 29 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.323 -8.518 -1.456 8.948 hybrid contribution 1.592 0.230 -0.199 1.621 sum 3.915 -8.288 -1.654 9.314 Atomic orbital electron populations 1.70110 1.05649 1.26029 1.46002 1.24974 0.94696 0.98734 0.94009 0.86717 0.80020 0.83781 0.78170 1.20628 1.21199 1.19913 1.20988 0.92458 0.89330 1.55140 0.92170 1.18273 0.87325 0.89048 0.91363 0.92493 1.61323 1.37192 1.22166 1.06011 1.22110 0.95569 0.89746 1.00691 1.21234 0.95143 1.01090 0.97830 1.19748 0.97178 0.94307 0.99414 1.20814 0.93807 0.98574 0.98644 1.20826 1.00389 0.97970 1.00315 1.17793 0.85795 0.96672 0.93699 1.91433 1.53127 1.96619 1.71776 1.21331 0.94067 0.98201 1.01765 1.21250 0.95803 0.95973 0.91663 0.93196 0.85479 0.91847 0.91858 0.91370 0.91685 0.86259 0.85960 0.84069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.53 12.72 55.43 0.70 -22.83 15 2 C 0.08 2.23 5.38 -17.82 -0.10 2.13 15 3 Si 0.89 20.66 29.54 -169.99 -5.02 15.63 15 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 7 C -0.54 -14.15 7.85 -34.44 -0.27 -14.42 15 8 H 0.06 1.58 6.71 -52.49 -0.35 1.22 15 9 C 0.25 5.95 2.40 -70.20 -0.17 5.78 15 10 H 0.06 1.52 8.14 -51.93 -0.42 1.10 15 11 N -0.64 -14.47 5.88 -109.28 -0.64 -15.11 15 12 C 0.05 0.91 6.62 -3.73 -0.02 0.88 15 13 C -0.11 -1.83 5.82 -27.92 -0.16 -1.99 15 14 C -0.11 -1.94 5.77 -104.58 -0.60 -2.54 15 15 C -0.10 -1.61 9.65 -39.50 -0.38 -1.99 15 16 C -0.18 -2.89 10.03 -39.58 -0.40 -3.28 15 17 C 0.08 1.48 7.30 -39.49 -0.29 1.19 15 18 F -0.15 -2.76 17.27 2.25 0.04 -2.72 15 19 C -0.13 -2.77 8.71 -39.41 -0.34 -3.11 15 20 C -0.04 -0.94 5.47 -104.63 -0.57 -1.51 15 21 H 0.26 6.90 8.31 -40.82 -0.34 6.57 15 22 H 0.33 7.41 8.55 -39.29 -0.34 7.08 15 23 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 24 H 0.06 1.19 8.05 -51.93 -0.42 0.77 15 25 H 0.07 1.04 8.14 -51.93 -0.42 0.61 15 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 27 H 0.12 1.55 8.06 -52.49 -0.42 1.13 15 28 H 0.12 1.67 8.06 -52.49 -0.42 1.25 15 29 H 0.14 3.00 7.08 -52.48 -0.37 2.63 15 LS Contribution 249.09 15.07 3.75 3.75 Total: -1.00 -27.40 249.09 -7.62 -35.03 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -3.15 Total: 5.10 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -3.31 Total: -18.85 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.06 Total: -37.94 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.04 Total: -2.72 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -27.40 -7.62 -35.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083664400.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.263 kcal (2) G-P(sol) polarization free energy of solvation -27.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds