Wall clock time and date at job start Mon Mar 30 2020 02:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99978 * 2 1 4 4 H 1.48504 * 109.47168 * 269.99743 * 3 2 1 5 5 H 1.48500 * 109.47167 * 29.99612 * 3 2 1 6 6 H 1.48501 * 109.47037 * 149.99706 * 3 2 1 7 7 C 1.37873 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99749 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00152 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.30051 * 299.57847 * 9 7 2 11 11 N 1.46634 * 109.30016 * 58.95832 * 9 7 2 12 12 C 1.47164 * 110.23906 * 172.87963 * 11 9 7 13 13 C 1.52898 * 108.50646 * 288.72246 * 12 11 9 14 14 C 1.50726 * 109.96392 * 50.38948 * 13 12 11 15 15 C 1.38696 * 118.45940 * 163.13590 * 14 13 12 16 16 C 1.37996 * 120.38056 * 179.83637 * 15 14 13 17 17 C 1.38483 * 119.80438 * 359.97438 * 16 15 14 18 18 F 1.35104 * 120.09326 * 180.02562 * 17 16 15 19 19 C 1.38232 * 119.81137 * 0.06760 * 17 16 15 20 20 C 1.37844 * 121.65150 * 343.08876 * 14 13 12 21 21 H 0.96997 * 119.99880 * 0.02562 * 1 2 3 22 22 H 1.00898 * 111.00205 * 49.45316 * 11 9 7 23 23 H 1.09001 * 109.62697 * 169.02526 * 12 11 9 24 24 H 1.08991 * 109.63986 * 48.43117 * 12 11 9 25 25 H 1.08995 * 109.38603 * 290.23549 * 13 12 11 26 26 H 1.09000 * 109.38733 * 170.54057 * 13 12 11 27 27 H 1.08002 * 119.81060 * 359.86558 * 15 14 13 28 28 H 1.08002 * 120.09484 * 179.97438 * 16 15 14 29 29 H 1.08004 * 119.81940 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6308 -2.5570 0.8950 11 7 0.3911 -2.5623 -1.1855 12 6 -0.2248 -3.8941 -1.2974 13 6 0.8577 -4.8975 -1.6965 14 6 2.0491 -4.7593 -0.7837 15 6 2.9749 -5.7913 -0.7445 16 6 4.0822 -5.7048 0.0744 17 6 4.2703 -4.5808 0.8613 18 9 5.3526 -4.4898 1.6648 19 6 3.3471 -3.5527 0.8228 20 6 2.2333 -3.6411 0.0010 21 1 -0.4850 0.8400 -0.0004 22 1 0.9090 -2.3319 -2.0203 23 1 -1.0043 -3.8742 -2.0591 24 1 -0.6541 -4.1810 -0.3375 25 1 1.1655 -4.7078 -2.7247 26 1 0.4590 -5.9091 -1.6205 27 1 2.8287 -6.6674 -1.3589 28 1 4.8000 -6.5113 0.1016 29 1 3.4939 -2.6759 1.4361 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083664400.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:23 Heat of formation + Delta-G solvation = -41.443412 kcal Electronic energy + Delta-G solvation = -14818.868275 eV Core-core repulsion = 12233.976077 eV Total energy + Delta-G solvation = -2584.892197 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.83934 -40.84402 -37.19122 -34.94084 -33.04773 -31.28666 -29.83557 -27.25111 -24.62106 -23.91934 -22.85303 -20.93211 -18.63180 -18.17586 -17.20130 -16.83722 -16.54019 -16.41525 -15.36243 -15.17929 -14.92566 -14.51747 -14.36407 -14.05283 -13.81689 -13.10017 -12.87363 -12.75061 -12.62332 -12.24624 -12.10324 -11.86954 -11.67006 -11.05368 -10.58118 -9.71805 -9.30803 -8.70414 -8.01176 -6.22689 0.26422 0.40751 1.42465 1.44369 1.53175 2.44214 2.71304 3.20290 3.36983 3.84304 3.93294 4.00572 4.11246 4.27401 4.40598 4.48871 4.71729 4.78649 5.02945 5.09743 5.14442 5.25125 5.31575 5.38404 5.42523 5.67562 5.74358 6.05016 6.20036 6.60119 7.04130 7.07603 7.49303 9.01819 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.025895 B = 0.011248 C = 0.008194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.023240 B = 2488.716619 C = 3416.129650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.038 3.962 3 Si 0.946 3.054 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.550 4.550 8 H 0.051 0.949 9 C 0.255 3.745 10 H 0.012 0.988 11 N -0.661 5.661 12 C 0.048 3.952 13 C -0.105 4.105 14 C -0.109 4.109 15 C -0.087 4.087 16 C -0.160 4.160 17 C 0.069 3.931 18 F -0.152 7.152 19 C -0.156 4.156 20 C -0.074 4.074 21 H 0.257 0.743 22 H 0.325 0.675 23 H 0.083 0.917 24 H 0.050 0.950 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.166 0.834 28 H 0.160 0.840 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.901 -11.173 -3.264 12.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.166 4.166 3 Si 0.772 3.228 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.588 4.588 8 H 0.069 0.931 9 C 0.147 3.853 10 H 0.030 0.970 11 N -0.288 5.288 12 C -0.082 4.082 13 C -0.143 4.143 14 C -0.110 4.110 15 C -0.105 4.105 16 C -0.179 4.179 17 C 0.050 3.950 18 F -0.131 7.131 19 C -0.176 4.176 20 C -0.077 4.077 21 H 0.067 0.933 22 H 0.142 0.858 23 H 0.101 0.899 24 H 0.069 0.931 25 H 0.103 0.897 26 H 0.120 0.880 27 H 0.184 0.816 28 H 0.178 0.822 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.183 -10.748 -2.914 11.582 hybrid contribution 1.339 0.829 0.278 1.599 sum 4.521 -9.919 -2.636 11.215 Atomic orbital electron populations 1.70227 1.06883 1.26568 1.47427 1.25646 0.95417 1.01675 0.93883 0.85768 0.78678 0.80135 0.78209 1.20055 1.20903 1.19932 1.21260 0.92265 0.90912 1.54406 0.93070 1.17837 0.87428 0.89709 0.90367 0.97005 1.61083 1.37042 1.25525 1.05141 1.22159 0.96682 0.88496 1.00820 1.21187 0.93224 1.02029 0.97863 1.20065 0.98540 0.93657 0.98730 1.21258 0.92275 0.98881 0.98036 1.21268 1.00860 0.97430 0.98321 1.17902 0.85472 0.97155 0.94508 1.91426 1.53005 1.96688 1.71962 1.21192 0.95388 0.98614 1.02401 1.20969 0.95830 0.96680 0.94177 0.93345 0.85779 0.89862 0.93148 0.89728 0.88049 0.81640 0.82232 0.86612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.50 12.72 21.45 0.27 -50.23 15 2 C 0.04 2.10 5.38 84.65 0.46 2.55 15 3 Si 0.95 43.56 29.54 68.60 2.03 45.59 15 4 H -0.27 -12.34 7.11 99.48 0.71 -11.64 15 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 15 6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 15 7 C -0.55 -30.05 7.85 25.60 0.20 -29.85 15 8 H 0.05 2.81 6.71 -2.91 -0.02 2.79 15 9 C 0.26 12.81 2.40 43.45 0.10 12.91 15 10 H 0.01 0.71 8.14 -2.39 -0.02 0.69 15 11 N -0.66 -30.43 5.88 -499.64 -2.94 -33.37 15 12 C 0.05 1.72 6.62 86.22 0.57 2.29 15 13 C -0.10 -2.98 5.82 29.82 0.17 -2.81 15 14 C -0.11 -3.73 5.77 -19.84 -0.11 -3.84 15 15 C -0.09 -2.37 9.65 22.32 0.22 -2.15 15 16 C -0.16 -4.60 10.03 22.27 0.22 -4.38 15 17 C 0.07 2.48 7.30 22.33 0.16 2.64 15 18 F -0.15 -5.43 17.27 44.97 0.78 -4.65 15 19 C -0.16 -6.61 8.71 22.38 0.19 -6.42 15 20 C -0.07 -3.17 5.47 -19.87 -0.11 -3.28 15 21 H 0.26 14.17 8.31 -92.71 -0.77 13.40 15 22 H 0.33 14.89 8.55 -89.70 -0.77 14.12 15 23 H 0.08 2.61 8.14 -2.39 -0.02 2.59 15 24 H 0.05 1.89 8.05 -2.39 -0.02 1.87 15 25 H 0.08 2.21 8.14 -2.39 -0.02 2.19 15 26 H 0.10 2.23 8.14 -2.39 -0.02 2.21 15 27 H 0.17 3.08 8.06 -2.91 -0.02 3.05 15 28 H 0.16 3.43 8.06 -2.91 -0.02 3.41 15 29 H 0.12 5.30 7.08 -2.91 -0.02 5.28 15 Total: -1.00 -61.57 249.09 2.62 -58.95 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.40 Total: 16.05 kcal Atomic # 6 Polarization: -34.42 SS G_CDS: 2.08 Total: -32.34 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -2.67 Total: -83.60 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.78 Total: -4.65 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -61.57 2.62 -58.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083664400.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.510 kcal (2) G-P(sol) polarization free energy of solvation -61.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds